Homer de novo Motif Results (08-homer/GerminatingvsDry_down/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 15
Total background sequences = 42542
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 * G T C A C T A G G T C A A G T C C G T A G A T C A T C G A G C T G C T A A T G C G T C A G A T C 1e-9-2.180e+0146.67%1.29%25.8bp (39.6bp)KLF11/MA1512.1/Jaspar(0.690)
More Information | Similar Motifs Found		motif file (matrix)
2 * A G C T G T C A G T A C C A G T A G C T A C T G A C G T A C G T A C T G A G T C A G C T A C G T 1e-8-1.921e+0120.00%0.02%28.2bp (19.5bp)SCRT2/MA0744.2/Jaspar(0.724)
More Information | Similar Motifs Found		motif file (matrix)
3 * A C G T G C A T A T C G A C T G A C G T C T A G C G T A A G T C C G T A G T A C A G T C A C G T 1e-7-1.698e+0120.00%0.05%12.8bp (25.0bp)Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer(0.754)
More Information | Similar Motifs Found		motif file (matrix)
4 * C G T A G T C A C G T A G T A C C G A T A C T G A T C G A C T G A T C G C T G A 1e-7-1.687e+0126.67%0.24%32.5bp (31.5bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.707)
More Information | Similar Motifs Found		motif file (matrix)
5 * G T A C T A G C C G T A C G T A A C G T A T C G A C G T C G A T C G A T A C T G A T G C G T A C 1e-5-1.367e+0153.33%6.37%23.2bp (33.9bp)HAP2/Literature(Harbison)/Yeast(0.654)
More Information | Similar Motifs Found		motif file (matrix)
6 * G A C T C G A T A G C T C G T A C G T A C A G T T A C G G T C A A G T C C A G T C G T A A C T G 1e-5-1.366e+0126.67%0.55%30.8bp (36.5bp)NKX6-3/MA1530.1/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
7 * A C T G G C T A C G T A C G A T A C T G C G T A C T G A C T A G C G T A C T A G G C T A C G T A 1e-5-1.264e+0120.00%0.19%7.8bp (32.9bp)TARDBP(RRM)/Homo_sapiens-RNCMPT00076-PBM/HughesRNA(0.774)
More Information | Similar Motifs Found		motif file (matrix)
8 * C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T 1e-4-1.101e+0126.67%1.08%21.0bp (45.0bp)Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer(0.859)
More Information | Similar Motifs Found		motif file (matrix)
9 * T G A C C G A T C A G T T C G A A C T G G A C T G T C A A T G C A C T G C G T A 1e-4-1.013e+0140.00%4.76%21.0bp (39.9bp)CG2931(RRM)/Drosophila_melanogaster-RNCMPT00147-PBM/HughesRNA(0.760)
More Information | Similar Motifs Found		motif file (matrix)
10 * A C T G C G T A A G T C A C G T C G T A A C T G A C G T A G T C A G T C A C G T 1e-3-7.934e+006.67%0.00%0.0bp (0.0bp)ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer(0.650)
More Information | Similar Motifs Found		motif file (matrix)
11 * A G T C C G T A A G T C A C G T A G T C A C T G A C T G A C G T A C T G C G T A 1e-3-7.934e+006.67%0.00%0.0bp (0.0bp)At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer(0.720)
More Information | Similar Motifs Found		motif file (matrix)
12 * C G T A A C T G A C G T C G T A A C T G A C T G A G T C A C G T C G T A A G T C 1e-3-7.934e+006.67%0.00%0.0bp (7.9bp)MSI(RRM)/Drosophila_melanogaster-RNCMPT00100-PBM/HughesRNA(0.710)
More Information | Similar Motifs Found		motif file (matrix)
13 * C G T A A G T C C G T A A C G T C G T A A G T C A C T G A G T C A G T C A C T G 1e-3-7.934e+006.67%0.00%0.0bp (8.0bp)PB0143.1_Klf7_2/Jaspar(0.697)
More Information | Similar Motifs Found		motif file (matrix)
14 * C G T A A C G T A C G T C G T A A C G T A G T C A G T C A C G T A G T C C G T A C G T A A C T G 1e-3-7.934e+006.67%0.00%0.0bp (0.0bp)ttk/MA0460.1/Jaspar(0.769)
More Information | Similar Motifs Found		motif file (matrix)
15 * C G T A A C G T A C T G A C G T A C T G A C G T A G T C C G T A A C G T C G T A A C T G A C G T 1e-3-7.934e+006.67%0.00%0.0bp (0.0bp)CUP9/MA0288.1/Jaspar(0.763)
More Information | Similar Motifs Found		motif file (matrix)
16 * C G T A C T A G C G T A C G A T G C T A C G A T C T A G C T G A 1e-3-7.333e+0026.67%2.80%28.6bp (36.6bp)GATA4/MA0482.2/Jaspar(0.699)
More Information | Similar Motifs Found		motif file (matrix)
17 * A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G 1e-3-7.241e+006.67%0.01%0.0bp (14.1bp)CDX2/MA0465.2/Jaspar(0.870)
More Information | Similar Motifs Found		motif file (matrix)
18 * A C T G A C G T C G T A A C G T C G T A C G T A C G T A A C G T A C T G A G T C 1e-3-7.241e+006.67%0.01%0.0bp (9.4bp)POL012.1_TATA-Box/Jaspar(0.784)
More Information | Similar Motifs Found		motif file (matrix)
19 * A C G T A C T G C G T A C G T A A C T G A G T C A G T C C G T A C G T A C G T A A C G T C G T A 1e-3-7.241e+006.67%0.01%0.0bp (13.0bp)che-1/MA0260.1/Jaspar(0.650)
More Information | Similar Motifs Found		motif file (matrix)
20 * A G T C A G T C A C T G A G T C C G T A A C G T A C T G A C T G 1e-2-5.855e+006.67%0.02%0.0bp (12.3bp)CG7903(RRM)/Drosophila_melanogaster-RNCMPT00144-PBM/HughesRNA(0.809)
More Information | Similar Motifs Found		motif file (matrix)
21 * A C T G A C G T A G T C A C T G A C T G A G T C C G T A A G T C 1e-2-5.297e+006.67%0.03%0.0bp (22.7bp)AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer(0.859)
More Information | Similar Motifs Found		motif file (matrix)