Information for 8-GGCAATAAAG (Motif 17)

A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A A C G T A C G T A C T G A G T C A G T C
p-value:1e-3
log p-value:-7.241e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.0 +/- 0.0bp
Average Position of motif in Background44.5 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.2/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GGCAATAAAG-
AAGCAATAAAAA
 A C G T A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C G T
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer

Match Rank:2
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GGCAATAAAG--
--HAATAAAGNN
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T
A C G T A C G T G A T C G C T A C G T A C G A T C G T A G T C A C T G A A T C G C G A T A C G T

CDX4/MA1473.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GGCAATAAAG-
GGCAATAAAAC
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C G T
C A T G T C A G A G T C T G C A C G T A A C G T C G T A C G T A G T C A G T C A A G T C

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GGCAATAAAG
RGCAATNAAA
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GGCAATAAAG---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX1/MA0878.2/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGCAATAAAG-
GGCCATAAAAC
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C G T
C A T G C T A G A G T C T G A C C G T A A C G T C T G A C G T A C T G A G T C A A G T C

pal-1/MA0924.1/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GGCAATAAAG
-GTAATAAA-
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G
A C G T C T A G A G C T G T C A C G T A A C G T C G T A C G T A G T C A A C G T

HOXD9/MA0913.2/Jaspar

Match Rank:8
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GGCAATAAAG-
-GCAATAAAAC
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C G T
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GGCAATAAAG-
GGTAATAAAAA
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

zen/dmmpmm(Bigfoot)/fly

Match Rank:10
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GGCAATAAAG
---AATAAA-
 A C T G A C T G A G T C C G T A C G T A A C G T C G T A C G T A C G T A A C T G
A C G T A C G T A C G T G T C A C G T A A C G T C G T A C G T A C G T A A C G T