Information for 2-WAAGTRCT (Motif 8)

C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T
Reverse Opposite:
G T C A A C T G A G C T C T G A G T A C C G A T C G A T C G T A
p-value:1e-4
log p-value:-1.101e+01
Information Content per bp:1.855
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif449.9
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets60.8 +/- 21.0bp
Average Position of motif in Background52.1 +/- 45.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-WAAGTRCT-
TTAAGTGCTT
 A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----WAAGTRCT-----
NATTTAAGTACTTANNA
 A C G T A C G T A C G T A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---WAAGTRCT-----
CTTTAAGTACTTAATG
 A C G T A C G T A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---WAAGTRCT------
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-WAAGTRCT
TTAAGTGC-
 A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:6
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---WAAGTRCT------
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-WAAGTRCT
TTAAGTGGT
 A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--WAAGTRCT
WAAAAGTGHH
 A C G T A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T
C G T A C G T A C G T A C G T A C G T A A C T G A G C T C T A G G T A C G C T A

Nkx3-2/MA0122.3/Jaspar

Match Rank:9
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--WAAGTRCT---
NTTAAGTGGTTNN
 A C G T A C G T C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T A C G T A C G T A C G T
C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:WAAGTRCT-
-AAGTACAV
 C G A T G C T A C G T A A C T G A G C T C T G A A G T C A C G T A C G T
A C G T G C T A T G C A A C T G A C G T C G T A A G T C C T G A T C G A