Homer de novo Motif Results (08-homer/Germinating_consensus/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 11688
Total background sequences = 34375
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C G A T G C T A C G T A A G C T A C T G A C T G A C T G A G T C A G C T C A G T C A G T C G T A 1e-751-1.730e+0322.00%5.75%25.2bp (40.5bp)PCF/Arabidopsis-Promoters/Homer(0.977)
More Information | Similar Motifs Found		motif file (matrix)
2 C G T A C G A T A C T G G T C A G A T C C G T A G A T C C T A G A G C T T A C G C G A T A T G C 1e-395-9.114e+0212.40%3.30%25.0bp (39.9bp)AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer(0.966)
More Information | Similar Motifs Found		motif file (matrix)
3 A G T C A T C G A C T G C G A T G A C T G A T C C T G A C T G A C G A T G A C T 1e-131-3.039e+0211.00%5.25%26.5bp (34.6bp)Unknown3/Arabidopsis-Promoters/Homer(0.842)
More Information | Similar Motifs Found		motif file (matrix)
4 G C T A G C T A T G C A A G T C A C T G C T G A A G T C C T A G G A C T T A G C A C T G A G C T 1e-92-2.139e+023.10%0.84%24.7bp (38.5bp)Unknown2/Arabidopsis-Promoters/Homer(0.933)
More Information | Similar Motifs Found		motif file (matrix)
5 C T A G G T C A G T A C C T G A G T A C T C A G T A G C C T A G A G T C A C T G 1e-81-1.888e+024.49%1.72%27.7bp (35.1bp)FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer(0.885)
More Information | Similar Motifs Found		motif file (matrix)
6 C G T A C T A G G C A T C T A G C T A G C T A G C G A T G A T C G A T C G A T C C T G A G A T C 1e-73-1.699e+022.71%0.80%25.2bp (35.7bp)At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer(0.955)
More Information | Similar Motifs Found		motif file (matrix)
7 A T G C A T C G G A C T A C T G A G C T A G T C A C T G A C G T G A C T G C A T 1e-72-1.660e+022.92%0.92%26.5bp (39.4bp)ARF4/MA1697.1/Jaspar(0.757)
More Information | Similar Motifs Found		motif file (matrix)
8 C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G 1e-56-1.302e+026.66%3.60%26.7bp (28.6bp)GAGA-repeat/Arabidopsis-Promoters/Homer(0.892)
More Information | Similar Motifs Found		motif file (matrix)
9 C G T A A G T C A C T G A T G C G T C A A T G C A G T C A C T G A C G T A C G T A C G T A C G T 1e-28-6.471e+010.21%0.01%32.9bp (14.9bp)KLF13/MA0657.1/Jaspar(0.669)
More Information | Similar Motifs Found		motif file (matrix)
10 C T G A C G T A A C G T A C T G C T G A G T A C A T C G G T C A C G T A C G A T 1e-14-3.443e+010.25%0.04%25.3bp (24.9bp)PB0108.1_Atf1_2/Jaspar(0.805)
More Information | Similar Motifs Found		motif file (matrix)