Information for 9-AGAGAGAGAG (Motif 8)

C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
Reverse Opposite:
T A G C G A C T A T G C C G A T A T G C C G A T T A G C C G A T T A G C G C A T
p-value:1e-56
log p-value:-1.302e+02
Information Content per bp:1.639
Number of Target Sequences with motif778.0
Percentage of Target Sequences with motif6.66%
Number of Background Sequences with motif1237.4
Percentage of Background Sequences with motif3.60%
Average Position of motif in Targets50.8 +/- 26.7bp
Average Position of motif in Background51.0 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:AGAGAGAGAG
RGAGAGAGAG
 C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
C T G A T A C G C G T A A T C G C G T A A T C G G C T A A T C G C G T A T A C G

Trl/MA0205.2/Jaspar

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGAGAG
GAAAGAGAGAGA-
 A C G T A C G T A C G T C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
T C A G T C G A T C G A G C T A C A T G C G T A A T C G T G C A C T A G T G C A T C A G T C G A A C G T

SeqBias: GA-repeat

Match Rank:3
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGAGAG
GAGAGAGAGA-
 A C G T C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C G T

FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.86
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAG--
RGAGAGAGAAAG
 C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G A C G T A C G T
C T A G C T A G T C G A C T A G C G T A A T C G T C G A A C T G C T G A T C G A C T G A T A C G

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:AGAGAGAGAG
RGAGAGAG--
 C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
C T A G T C A G C T G A T C A G T G C A A C T G T C G A T C A G A C G T A C G T

RAMOSA1/MA1416.1/Jaspar

Match Rank:6
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGAGAG-
GAGAGAGAGAGAGA
 A C G T A C G T A C G T C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G A C G T
C T A G T C G A C T A G T C G A A C T G G T C A A C T G G T C A A C T G G T C A A C T G T C G A C T A G C T G A

SRSF10(RRM)/Homo_sapiens-RNCMPT00088-PBM/HughesRNA

Match Rank:7
Score:0.83
Offset:2
Orientation:forward strand
Alignment:AGAGAGAGAG
--AGAGAGG-
 C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
A C G T A C G T G T C A C T A G C T G A C T A G C T G A T C A G T C A G A C G T

BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--AGAGAGAGAG
GARGAGAGAGAA
 A C G T A C G T C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
C A T G G C T A C T A G T A C G C G T A T C A G C G T A A C T G C G T A C A T G C T G A C G T A

BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGAGAG----
TAGAGAGAGAGARAR
 A C G T C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G A C G T A C G T A C G T A C G T
C A G T G C T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G C G T A C T A G C G T A C T G A C T G A C T A G

SRSF10(RRM)/Homo_sapiens-RNCMPT00089-PBM/HughesRNA

Match Rank:10
Score:0.82
Offset:2
Orientation:forward strand
Alignment:AGAGAGAGAG
--AGAGAAA-
 C G T A A T C G C G T A A T C G C G T A A T C G C G T A T A C G C T G A A T C G
A C G T A C G T C G T A C T A G C G T A C T A G C T G A T C G A T C G A A C G T