| Rank | Motif | P-value | log P-pvalue | % of Targets | % of Background | STD(Bg STD) | Best Match/Details | Motif File |
| 1 | 1e-84 | -1.952e+02 | 54.67% | 40.08% | 55.7bp (78.5bp) | AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer(0.749) More Information | Similar Motifs Found | motif file (matrix) | |
| 2 | 1e-68 | -1.587e+02 | 24.73% | 14.63% | 57.0bp (75.9bp) | AT1G72740/MA1353.1/Jaspar(0.791) More Information | Similar Motifs Found | motif file (matrix) | |
| 3 | 1e-50 | -1.155e+02 | 43.00% | 32.23% | 55.1bp (78.8bp) | AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer(0.789) More Information | Similar Motifs Found | motif file (matrix) | |
| 4 | 1e-49 | -1.151e+02 | 17.10% | 9.80% | 55.6bp (68.4bp) | Stat5b/MA1625.1/Jaspar(0.745) More Information | Similar Motifs Found | motif file (matrix) | |
| 5 | 1e-42 | -9.702e+01 | 23.53% | 15.62% | 57.4bp (72.1bp) | HNRNPR(RRM)/Gallus_gallus-RNCMPT00288-PBM/HughesRNA(0.720) More Information | Similar Motifs Found | motif file (matrix) | |
| 6 | 1e-33 | -7.828e+01 | 36.18% | 27.72% | 52.4bp (77.8bp) | PUCHI/MA1252.1/Jaspar(0.914) More Information | Similar Motifs Found | motif file (matrix) | |
| 7 | 1e-21 | -4.908e+01 | 13.91% | 9.43% | 55.4bp (68.4bp) | GATA11/MA1014.1/Jaspar(0.732) More Information | Similar Motifs Found | motif file (matrix) | |
| 8 | 1e-20 | -4.769e+01 | 59.98% | 52.93% | 55.8bp (77.8bp) | Unknown4/Arabidopsis-Promoters/Homer(0.804) More Information | Similar Motifs Found | motif file (matrix) | |
| 9 | 1e-15 | -3.662e+01 | 0.47% | 0.04% | 60.0bp (34.4bp) | SeqBias: CA-repeat(0.650) More Information | Similar Motifs Found | motif file (matrix) | |
| 10 | 1e-13 | -3.103e+01 | 3.43% | 1.76% | 54.7bp (66.8bp) | CHR(?)/Hela-CellCycle-Expression/Homer(0.752) More Information | Similar Motifs Found | motif file (matrix) | |
| 11 | 1e-13 | -3.079e+01 | 2.37% | 1.04% | 51.1bp (73.1bp) | BARHL1/MA0877.2/Jaspar(0.724) More Information | Similar Motifs Found | motif file (matrix) | |
| 12 | 1e-13 | -3.023e+01 | 1.92% | 0.76% | 55.3bp (69.8bp) | Gsc/dmmpmm(Noyes)/fly(0.742) More Information | Similar Motifs Found | motif file (matrix) | |
| 13 | 1e-12 | -2.924e+01 | 2.71% | 1.29% | 53.9bp (78.7bp) | AT3G10030/MA1662.1/Jaspar(0.688) More Information | Similar Motifs Found | motif file (matrix) | |
| 14 * | 1e-11 | -2.680e+01 | 3.41% | 1.84% | 60.0bp (84.8bp) | ceh-28/MA1445.1/Jaspar(0.837) More Information | Similar Motifs Found | motif file (matrix) | |
| 15 * | 1e-11 | -2.534e+01 | 2.24% | 1.05% | 54.5bp (61.1bp) | RBM47(RRM)/Gallus_gallus-RNCMPT00279-PBM/HughesRNA(0.697) More Information | Similar Motifs Found | motif file (matrix) | |
| 16 * | 1e-9 | -2.075e+01 | 4.86% | 3.15% | 57.8bp (71.5bp) | MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer(0.786) More Information | Similar Motifs Found | motif file (matrix) | |
| 17 * | 1e-4 | -1.020e+01 | 0.18% | 0.03% | 39.4bp (56.2bp) | unc-86/MA0926.1/Jaspar(0.661) More Information | Similar Motifs Found | motif file (matrix) | |
| 18 * | 1e-3 | -7.306e+00 | 0.16% | 0.03% | 39.2bp (45.6bp) | SRSF1(RRM)/Homo_sapiens-RNCMPT00163-PBM/HughesRNA(0.621) More Information | Similar Motifs Found | motif file (matrix) |