Information for 5-TTWCCMAATTCA (Motif 5)

G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
Reverse Opposite:
C G A T T A C G C T G A G C T A C G A T A G C T A C G T C T A G C T A G C G A T C T G A C G T A
p-value:1e-42
log p-value:-9.702e+01
Information Content per bp:1.606
Number of Target Sequences with motif1042.0
Percentage of Target Sequences with motif23.53%
Number of Background Sequences with motif6335.7
Percentage of Background Sequences with motif15.62%
Average Position of motif in Targets101.4 +/- 57.4bp
Average Position of motif in Background100.3 +/- 72.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNRNPR(RRM)/Gallus_gallus-RNCMPT00288-PBM/HughesRNA

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TTWCCMAATTCA
---CCAAATT--
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
A C G T A C G T A C G T G T A C G T A C C G T A C G T A C G T A C G A T A G C T A C G T A C G T

Hr46/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTWCCMAATTCA
TGACCCAATT--
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
C G A T C T A G C G T A A G T C A G T C A G T C C G T A G T C A C G A T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTWCCMAATTCA------
--AATCAATTCAATAATT
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

HAP2/Literature(Harbison)/Yeast

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTWCCMAATTCA
----CCAAT---
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T

HAP3/Literature(Harbison)/Yeast

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTWCCMAATTCA
----CCAAT---
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T

HAP5/Literature(Harbison)/Yeast

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTWCCMAATTCA
----CCAAT---
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T

HAP5(MacIsaac)/Yeast

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTWCCMAATTCA
----CCAAT---
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T

HAP3(MacIsaac)/Yeast

Match Rank:8
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTWCCMAATTCA
----CCAAT---
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T

TCX2/MA1162.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTWCCMAATTCA---
ATTTAAAATTCAAAT
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A A C G T A C G T A C G T
C G T A C G A T G C A T G A C T T G C A C T G A G C T A C G T A C G A T A C G T A G T C T C G A C G T A C G T A G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTWCCMAATTCA------
-GACCACATTCATACAAT
 G C A T G A C T G C T A G A T C G A T C T G C A C T G A C G T A C G A T A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T