Information for 2-TTTGGGTTTT (Motif 2)

C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T
Reverse Opposite:
C G T A C G T A G C T A G T C A G T A C G A T C G A T C G C T A C T G A G C T A
p-value:1e-68
log p-value:-1.587e+02
Information Content per bp:1.627
Number of Target Sequences with motif1095.0
Percentage of Target Sequences with motif24.73%
Number of Background Sequences with motif5934.5
Percentage of Background Sequences with motif14.63%
Average Position of motif in Targets100.7 +/- 57.0bp
Average Position of motif in Background101.8 +/- 75.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AT1G72740/MA1353.1/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---TTTGGGTTTT--
GGATTTAGGGTTTAG
 A C G T A C G T A C G T C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T A C G T A C G T
C T A G C T A G C T G A C G A T G A C T G C A T C T G A A T C G A C T G A C T G G A C T G C A T G C A T G C T A A C T G

AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---TTTGGGTTTT--
NNWDTTAGGKTWWNN
 A C G T A C G T A C G T C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T A C G T A C G T
C G A T G C T A G C T A C G T A G A C T A C G T C G T A A C T G A C T G A C G T A G C T C G A T G C T A G C T A G C A T

TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TTTGGGTTTT
--AGGGTTTA
 C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T
A C G T A C G T C G T A A C T G A C T G C T A G A C G T A C G T A C G T C G T A

PABPC3(RRM)/Homo_sapiens-RNCMPT00153-PBM/HughesRNA

Match Rank:4
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:TTTGGGTTTT-
----GGTTTTC
 C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T A C G T
A C G T A C G T A C G T A C G T A C T G C A T G A C G T A C G T A C G T A C G T A G T C

TBP3/MA1355.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTTGGGTTTT----
AATTAGGGTTTANTT
 A C G T C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T A C G T A C G T A C G T A C G T
C T G A C G T A G A C T A C G T C G T A A C T G A C T G A C T G A G C T C G A T G C A T G C T A C G T A C G A T C G A T

AT1G76870/MA1367.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTTGGGTTTT----
TNCCGGTTTTNNTT
 C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A T C C T A G A C T G C A G T G C A T C G A T C G A T C T A G C A G T C G A T C G A T

IRF5/MA1420.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGGTTTT--
AGTTTCGGTTTCGG
 A C G T A C G T C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T A C G T A C G T
T C G A A C T G C A G T G C A T A C G T A G T C C T A G C T A G G A C T C G A T G C A T G T A C T C A G C T A G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TTTGGGTTTT
--NGGGATTA
 C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

An_0265(KH)/Aspergillus_nidulans-RNCMPT00265-PBM/HughesRNA

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTGGGTTTT
-TTAGGTN--
 C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T
A C G T A C G T A C G T C T G A A C T G A C T G A C G T G A C T A C G T A C G T

MUB(KH)/Drosophila_melanogaster-RNCMPT00137-PBM/HughesRNA

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TTTGGGTTTT
--TAGGGTT-
 C G A T G A C T C G A T C T A G C T A G C A T G C A G T C G A T A C G T G C A T
A C G T A C G T C G A T G T C A T A C G A C T G A C T G A C G T C G A T A C G T