Information for 3-WNATCGAAATYD (Motif 3)

C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G
Reverse Opposite:
G T A C T C A G T C G A C G A T A G C T G A C T A G T C A C T G T G C A C A G T C A T G G C T A
p-value:1e-50
log p-value:-1.155e+02
Information Content per bp:1.527
Number of Target Sequences with motif1904.0
Percentage of Target Sequences with motif43.00%
Number of Background Sequences with motif13073.9
Percentage of Background Sequences with motif32.23%
Average Position of motif in Targets98.4 +/- 55.1bp
Average Position of motif in Background100.6 +/- 78.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:WNATCGAAATYD-
-HATCGATWHNDH
 C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G A C G T
A C G T G C T A C G T A G C A T A G T C C T A G C G T A G C A T C G A T G A C T A T G C C T A G G C T A

XBP1/MA0414.1/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:WNATCGAAATYD
--CTCGAGA---
 C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G
A C G T A C G T G A T C A C G T A G T C A C T G C G T A T C A G T C A G A C G T A C G T A C G T

PF10_0214(RRM)/Plasmodium_falciparum-RNCMPT00240-PBM/HughesRNA

Match Rank:3
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:WNATCGAAATYD
---TCGGAAT--
 C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G
A C G T A C G T A C G T A C G T A G T C A C T G A C T G C G T A C G T A C G A T A C G T A C G T

STB4/MA0391.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:forward strand
Alignment:WNATCGAAATYD
--CTCGGAA---
 C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G
A C G T A C G T A G T C A C G T A G T C A C T G A C T G C G T A C G T A A C G T A C G T A C G T

ERT1/MA0420.1/Jaspar

Match Rank:5
Score:0.75
Offset:2
Orientation:forward strand
Alignment:WNATCGAAATYD
--ACCGGAAC--
 C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G
A C G T A C G T C T G A A G T C A G T C A C T G A C T G C G T A C G T A A G T C A C G T A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-WNATCGAAATYD--
CGTATCGAAACCAAA
 A C G T C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G A C G T A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PB0035.1_Irf5_1/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--WNATCGAAATYD-
ATAAACCGAAACCAA
 A C G T A C G T C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G A C G T
C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A

CEP3/MA0282.1/Jaspar

Match Rank:8
Score:0.73
Offset:2
Orientation:forward strand
Alignment:WNATCGAAATYD
--CTCGGAAA--
 C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G
A C G T A C G T A G T C A C G T A G T C A C T G A C T G C G T A C G T A T C G A A C G T A C G T

PB0036.1_Irf6_1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-WNATCGAAATYD----
CTGATCGAAACCAAAGT
 A C G T C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

LYS14/MA0325.1/Jaspar

Match Rank:10
Score:0.70
Offset:3
Orientation:forward strand
Alignment:WNATCGAAATYD
---CCGGAATT-
 C G A T G T A C G T C A A C G T A G T C A C T G C T G A T C G A G C T A A G C T A G T C C A T G
A C G T A C G T A C G T T A G C A T G C A C T G A C T G C G T A C G T A C G A T G A C T A C G T