Information for 9-ATGGCGA (Motif 9)

G U C A A G C U U C A G A U C G A G U C A C U G C G U A
Reverse Opposite:
C G A U A G U C C U A G U A G C A G U C U C G A A C G U
p-value:1e-5
log p-value:-1.315e+01
Information Content per bp:1.747
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif1972.3
Percentage of Background Sequences with motif4.96%
Average Position of motif in Targets42.5 +/- 27.1bp
Average Position of motif in Background48.8 +/- 43.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-122* MIMAT0004590 Homo sapiens miR-122* Targets (miRBase)

Match Rank:1
Score:0.68
Offset:-14
Orientation:forward strand
Alignment:--------------ATGGCGA-
TATTTAGTGTGATAATGGCGTT
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A A C G U
A C G U C G U A A C G U A C G U A C G U C G U A A C U G A C G U A C U G A C G U A C U G C G U A A C G U C G U A C G U A A C G U A C U G A C U G A G U C A C U G A C G U A C G U

hsa-miR-4304 MIMAT0016854 Homo sapiens miR-4304 Targets (miRBase)

Match Rank:2
Score:0.63
Offset:-10
Orientation:forward strand
Alignment:----------ATGGCGA
TGCCCTGGACATGCCGG
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A
A C G U A C U G A G U C A G U C A G U C A C G U A C U G A C U G C G U A A G U C C G U A A C G U A C U G A G U C A G U C A C U G A C U G

hsa-miR-1307 MIMAT0005951 Homo sapiens miR-1307 Targets (miRBase)

Match Rank:3
Score:0.61
Offset:-13
Orientation:forward strand
Alignment:-------------ATGGCGA--
CACGACCGACGCCACGCCGAGT
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A A C G U A C G U
A G U C C G U A A G U C A C U G C G U A A G U C A G U C A C U G C G U A A G U C A C U G A G U C A G U C C G U A A G U C A C U G A G U C A G U C A C U G C G U A A C U G A C G U

hsa-miR-3187-3p MIMAT0015069 Homo sapiens miR-3187-3p Targets (miRBase)

Match Rank:4
Score:0.61
Offset:-12
Orientation:forward strand
Alignment:------------ATGGCGA-
CCGCGCAGCCCCATGGCCAA
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A A C G U
A G U C A G U C A C U G A G U C A C U G A G U C C G U A A C U G A G U C A G U C A G U C A G U C C G U A A C G U A C U G A C U G A G U C A G U C C G U A C G U A

hsa-miR-4798-5p MIMAT0019974 Homo sapiens miR-4798-5p Targets (miRBase)

Match Rank:5
Score:0.60
Offset:-14
Orientation:forward strand
Alignment:--------------ATGGCGA-
CCAATTCACAAAGTATACCGAA
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A A C G U
A G U C A G U C C G U A C G U A A C G U A C G U A G U C C G U A A G U C C G U A C G U A C G U A A C U G A C G U C G U A A C G U C G U A A G U C A G U C A C U G C G U A C G U A

hsa-miR-1181 MIMAT0005826 Homo sapiens miR-1181 Targets (miRBase)

Match Rank:6
Score:0.60
Offset:-11
Orientation:forward strand
Alignment:-----------ATGGCGA---
CGGCTCGGGTGGCGGCGACGG
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A A C G U A C G U A C G U
A G U C A C U G A C U G A G U C A C G U A G U C A C U G A C U G A C U G A C G U A C U G A C U G A G U C A C U G A C U G A G U C A C U G C G U A A G U C A C U G A C U G

hsa-miR-4776-3p MIMAT0019933 Homo sapiens miR-4776-3p Targets (miRBase)

Match Rank:7
Score:0.59
Offset:-15
Orientation:forward strand
Alignment:---------------ATGGCGA-
ATGCAGTGGACCAGGATGGCAAG
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A A C G U
C G U A A C G U A C U G A G U C C G U A A C U G A C G U A C U G A C U G C G U A A G U C A G U C C G U A A C U G A C U G C G U A A C G U A C U G A C U G A G U C C G U A C G U A A C U G

hsa-miR-1249 MIMAT0005901 Homo sapiens miR-1249 Targets (miRBase)

Match Rank:8
Score:0.58
Offset:-15
Orientation:forward strand
Alignment:---------------ATGGCGA
TGAAGAAGGGGGGGAAGGGCGT
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A
A C G U A C U G C G U A C G U A A C U G C G U A C G U A A C U G A C U G A C U G A C U G A C U G A C U G A C U G C G U A C G U A A C U G A C U G A C U G A G U C A C U G A C G U

hsa-miR-4790-5p MIMAT0019961 Homo sapiens miR-4790-5p Targets (miRBase)

Match Rank:9
Score:0.57
Offset:-12
Orientation:forward strand
Alignment:------------ATGGCGA-
AACATGAATGGTAAAGCGAT
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A A C G U
C G U A C G U A A G U C C G U A A C G U A C U G C G U A C G U A A C G U A C U G A C U G A C G U C G U A C G U A C G U A A C U G A G U C A C U G C G U A A C G U

hsa-miR-1234 MIMAT0005589 Homo sapiens miR-1234 Targets (miRBase)

Match Rank:10
Score:0.55
Offset:-15
Orientation:forward strand
Alignment:---------------ATGGCGA
GTGGGGTGGGTGGTCAGGCCGA
 A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U A C G U G U C A A G C U U C A G A U C G A G U C A C U G C G U A
A C U G A C G U A C U G A C U G A C U G A C U G A C G U A C U G A C U G A C U G A C G U A C U G A C U G A C G U A G U C C G U A A C U G A C U G A G U C A G U C A C U G C G U A