Information for 13-TSCTCCGC (Motif 22)

A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
Reverse Opposite:
T C A G G T A C T A C G C A T G G C T A A T C G T A C G T G C A
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.559
Number of Target Sequences with motif2828.0
Percentage of Target Sequences with motif23.71%
Number of Background Sequences with motif7729.6
Percentage of Background Sequences with motif21.15%
Average Position of motif in Targets99.8 +/- 53.1bp
Average Position of motif in Background98.6 +/- 66.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN28A(CSD)/Homo_sapiens-RNCMPT00162-PBM/HughesRNA

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:TSCTCCGC
TCCTCCG-
 A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
A G C T A T G C A T G C A C G T A T G C A T G C C T A G A C G T

CHA4/MA0283.1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TSCTCCGC-
-TCTCCGCC
 A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C A C G T
A C G T C G A T A G T C A G C T A G T C A G T C A C T G A G T C A G T C

LIN28A(CSD,Znf)/Homo_sapiens-RNCMPT00036-PBM/HughesRNA

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TSCTCCGC
TTCTCCN-
 A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
A G C T C G A T A G T C A C G T A G T C A G T C C A T G A C G T

RGT1/Literature(Harbison)/Yeast

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TSCTCCGC
TNNTCCG-
 A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T

NCU02404(RRM)/Neurospora_crassa-RNCMPT00238-PBM/HughesRNA

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TSCTCCGC
TTCCTCC--
 A C G T A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
G A C T C G A T A G T C A G T C C G A T A G T C A G T C A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TSCTCCGC
-GCTCCG-
 A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TSCTCCGC-
-CCACCGCC
 A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C A C G T
A C G T A G T C A G T C T C G A A G T C A G T C A C T G G T A C G A T C

ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TSCTCCGC-
-CCACCGTC
 A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C A C G T
A C G T A T G C A G T C C T G A A G T C A G T C A C T G G A C T G T A C

SRSF1(RRM)/Homo_sapiens-RNCMPT00107-PBM/HughesRNA

Match Rank:9
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TSCTCCGC
NTCCTCC--
 A C G T A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
A C G T A G C T A G T C T G A C A C G T A G T C A G T C A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00106-PBM/HughesRNA

Match Rank:10
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TSCTCCGC
NTCCTCC--
 A C G T A C G T A T G C A T G C C G A T G T A C A T G C C A T G A G T C
A C T G A G C T A G T C T G A C C G A T A G T C A G T C A C G T A C G T