Information for 4-TTTATTABCGAT (Motif 6)

A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
Reverse Opposite:
C G T A A C G T A T G C C T A G T C G A A C G T C G T A C G T A C G A T C G T A C G T A C G T A
p-value:1e-7
log p-value:-1.638e+01
Information Content per bp:1.804
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif10.84%
Number of Background Sequences with motif418.5
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets46.4 +/- 30.4bp
Average Position of motif in Background52.1 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer

Match Rank:1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TTTATTABCGAT
NNCTTTATTD-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
T G C A G C T A T A G C G A C T C A G T G C A T G C T A G C A T C G A T C T A G A C G T A C G T A C G T A C G T A C G T

zen/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TTTATTABCGAT
TTTATT------
 A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
A C G T A C G T C G A T C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

cad/dmmpmm(Noyes)/fly

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TTTATTABCGAT
TTTATTAN----
 A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
G A C T C G A T C G A T C G T A A C G T C A G T C T G A A T C G A C G T A C G T A C G T A C G T

cad/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TTTATTABCGAT
NTTTTATTAN----
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
G A C T G C A T A C G T C G A T C G A T C G T A A C G T C A G T C T G A A T C G A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TTTATTABCGAT
NTTTTATTACN---
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTTATTABCGAT
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

pal-1/MA0924.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TTTATTABCGAT
TTTATTAC----
 A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
A C G T A C G T C G A T C G T A A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATTABCGAT
TNAATTTTATTACCTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A A C G T

hb/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TTTATTABCGAT
TTTTTTATGC--
 A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A T C G A C G T A C G T

hb/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TTTATTABCGAT
TTTTTTAT----
 A C G T A C G T A C G T C G T A C G A T C G A T G T C A A G C T A G T C A T C G C G T A C G A T
G C A T A C G T A G C T A G C T A C G T G A C T C T G A G C A T A C G T A C G T A C G T A C G T