Information for 2-CATAGACCAA (Motif 5)

A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G A C G T G T A C A G C T G T C A A C G T A C T G
p-value:1e-7
log p-value:-1.662e+01
Information Content per bp:1.894
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif7.23%
Number of Background Sequences with motif110.5
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets46.3 +/- 10.3bp
Average Position of motif in Background53.3 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HAP2/MA0313.1/Jaspar

Match Rank:1
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:CATAGACCAA
-----ACCAA
 A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T C T G A G T A C A G T C G T C A C G T A

GTS1(MacIsaac)/Yeast

Match Rank:2
Score:0.69
Offset:4
Orientation:forward strand
Alignment:CATAGACCAA
----TACCAA
 A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T C G A T C G T A A G T C A G T C T C G A C T G A

HuR(RRM)/Homo_sapiens-RNCMPT00136-PBM/HughesRNA

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CATAGACCAA
---AAACCAA
 A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A
A C G T A C G T A C G T C G T A C G T A G T C A G A T C G T A C C G T A C G T A

PBX2/MA1113.2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATAGACCAA-
GTCATAAATCATT
 A C G T A C G T A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A A C G T
T C A G G A C T G T A C C T G A A G C T G T C A G C T A G C T A G C A T G A T C G C T A G A C T G C A T

HNF4A/MA0114.4/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATAGACCAA-
TCCAAAGTCCAAA
 A C G T A C G T A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A A C G T
C A G T G A T C G A T C T G C A T C G A C T G A A C T G C A G T G A T C G A T C C G T A C T G A C T G A

HNF4G/MA0484.2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATAGACCAA-
TCCAAAGTCCAGA
 A C G T A C G T A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A A C G T
C A G T A G T C G A T C T C G A T C G A C T G A A C T G C A G T G A T C G A T C C G T A T C A G C T G A

HAP2/Literature(Harbison)/Yeast

Match Rank:7
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CATAGACCAA-
------CCAAT
 A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T

HAP3/Literature(Harbison)/Yeast

Match Rank:8
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CATAGACCAA-
------CCAAT
 A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T

HAP5/Literature(Harbison)/Yeast

Match Rank:9
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CATAGACCAA-
------CCAAT
 A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T

HAP5(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:6
Orientation:forward strand
Alignment:CATAGACCAA-
------CCAAT
 A G T C C G T A A C G T C T G A C A T G C G T A A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T