Motif 4

Information for 3-TATTTATATATM (Motif 4)

Reverse Opposite:

p-value:	1e-7
log p-value:	-1.683e+01
Information Content per bp:	1.727
Number of Target Sequences with motif	10.0
Percentage of Target Sequences with motif	12.05%
Number of Background Sequences with motif	532.9
Percentage of Background Sequences with motif	1.16%
Average Position of motif in Targets	47.8 +/- 17.0bp
Average Position of motif in Background	50.9 +/- 39.6bp
Strand Bias (log2 ratio + to - strand density)	2.2
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

nub/dmmpmm(Noyes)/fly

Match Rank:	1
Score:	0.81
Offset:	-2
Orientation:	reverse strand
Alignment:	--TATTTATATATM CTNATTTGCATAT-

POU5F1B/MA0792.1/Jaspar

Match Rank:	2
Score:	0.80
Offset:	1
Orientation:	reverse strand
Alignment:	TATTTATATATM -ATTTGCATA--

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:	3
Score:	0.80
Offset:	1
Orientation:	reverse strand
Alignment:	TATTTATATATM -ATTTGCATAT-

nub/MA0197.2/Jaspar

Match Rank:	4
Score:	0.80
Offset:	-2
Orientation:	reverse strand
Alignment:	--TATTTATATATM CTNATTTGCATA--

POU2F3/MA0627.2/Jaspar

Match Rank:	5
Score:	0.79
Offset:	-1
Orientation:	reverse strand
Alignment:	-TATTTATATATM NNATTTGCATATN

POU3F4/MA0789.1/Jaspar

Match Rank:	6
Score:	0.79
Offset:	1
Orientation:	reverse strand
Alignment:	TATTTATATATM -ATTTGCATA--

POU2F1/MA0785.1/Jaspar

Match Rank:	7
Score:	0.78
Offset:	0
Orientation:	reverse strand
Alignment:	TATTTATATATM AATTTGCATANT

POU3F1/MA0786.1/Jaspar

Match Rank:	8
Score:	0.78
Offset:	-1
Orientation:	reverse strand
Alignment:	-TATTTATATATM TAATTTGCATAA-

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:	9
Score:	0.78
Offset:	1
Orientation:	forward strand
Alignment:	TATTTATATATM -ATTTGCATAA-

PH0144.1_Pou2f2/Jaspar

Match Rank:	10
Score:	0.78
Offset:	-3
Orientation:	reverse strand
Alignment:	---TATTTATATATM- TNTAATTTGCATANNN