Information for 5-CGCGCGGA (Motif 11)

A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C T G A G T C A C T G A G T C A C T G
p-value:1e-2
log p-value:-6.317e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets82.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LARK(RRM,Znf)/Drosophila_melanogaster-RNCMPT00124-PBM/HughesRNA

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-CGCGCGGA
NCGCGCGG-
 A C G T A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
G A T C A T G C C A T G A T G C A C T G A T G C A T C G A C T G A C G T

LARK(RRM,Znf)/Drosophila_melanogaster-RNCMPT00097-PBM/HughesRNA

Match Rank:2
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-CGCGCGGA
TCGCGCG--
 A C G T A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
C A G T A G T C A C T G A T G C A C T G A T G C A T C G A C G T A C G T

LARK(RRM,Znf)/Drosophila_melanogaster-RNCMPT00035-PBM/HughesRNA

Match Rank:3
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CGCGCGGA
TCGCGCG--
 A C G T A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
C G A T A G T C C T A G A G T C A C T G A G T C A C T G A C G T A C G T

RSC30/MA0375.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CGCGCGGA
CGCGCGCG
 A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
A T G C A T C G A G T C A T C G A T G C A T C G A T G C A C T G

PPRC1(RRM)/Homo_sapiens-RNCMPT00045-PBM/HughesRNA

Match Rank:5
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CGCGCGGA
CGCGCGC-
 A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
A T G C A T C G A T G C A C T G A T G C T A C G A T G C A C G T

RBM8A(RRM)/Homo_sapiens-RNCMPT00056-PBM/HughesRNA

Match Rank:6
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CGCGCGGA
GCGCGCG--
 A C G T A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
C T A G A G T C A T C G A T G C A T C G A T G C A C T G A C G T A C G T

RSC3/MA0374.1/Jaspar

Match Rank:7
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CGCGCGGA
CGCGCGG-
 A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
A T G C A C T G A G T C A C T G A G T C T A C G T A C G A C G T

FUS(RRM)/Homo_sapiens-RNCMPT00018-PBM/HughesRNA

Match Rank:8
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CGCGCGGA
-GCGCGCA
 A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
A C G T C T A G A G T C A C T G A G T C A C T G G A T C C G T A

RBM4(RRM,Znf)/Homo_sapiens-RNCMPT00052-PBM/HughesRNA

Match Rank:9
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CGCGCGGA
-GCGCGGG
 A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A
A C G T A C T G A G T C A C T G A T G C A T C G A T C G A T C G

nit-4/MA1435.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CGCGCGGA-
NNCCGCGGAN
 A C G T A G T C A C T G A G T C A C T G A G T C A C T G A C T G C G T A A C G T
A G T C A G C T A G T C A G T C A C T G A T G C C T A G A C T G C T G A C T A G