Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 11692)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 34360)	% of Background Sequences with Motif
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-792	-1.824e+03	0.0000	1997.0	17.08%	1116.7	3.25%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-396	-9.124e+02	0.0000	1533.0	13.11%	1257.9	3.66%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-382	-8.805e+02	0.0000	1734.0	14.83%	1612.5	4.69%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-361	-8.321e+02	0.0000	1331.0	11.39%	1042.1	3.03%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-361	-8.314e+02	0.0000	1102.0	9.43%	725.8	2.11%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-360	-8.306e+02	0.0000	1406.0	12.03%	1155.9	3.36%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-353	-8.134e+02	0.0000	1417.0	12.12%	1191.3	3.47%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-347	-7.995e+02	0.0000	1273.0	10.89%	991.9	2.89%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-346	-7.971e+02	0.0000	1347.0	11.52%	1103.5	3.21%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-342	-7.895e+02	0.0000	1209.0	10.34%	909.6	2.65%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-341	-7.871e+02	0.0000	1518.0	12.99%	1381.1	4.02%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-332	-7.645e+02	0.0000	1082.0	9.26%	756.5	2.20%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-331	-7.624e+02	0.0000	1125.0	9.62%	817.3	2.38%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-330	-7.620e+02	0.0000	1298.0	11.10%	1068.2	3.11%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-327	-7.536e+02	0.0000	1363.0	11.66%	1177.1	3.42%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-325	-7.505e+02	0.0000	1208.0	10.33%	947.7	2.76%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-323	-7.451e+02	0.0000	1298.0	11.10%	1087.4	3.16%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-308	-7.106e+02	0.0000	1180.0	10.09%	948.3	2.76%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-304	-7.020e+02	0.0000	2013.0	17.22%	2383.8	6.94%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e-301	-6.946e+02	0.0000	1035.0	8.85%	756.3	2.20%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e-293	-6.748e+02	0.0000	1015.0	8.68%	747.8	2.18%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-292	-6.740e+02	0.0000	2091.0	17.89%	2586.7	7.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-286	-6.603e+02	0.0000	1274.0	10.90%	1151.7	3.35%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-274	-6.312e+02	0.0000	1523.0	13.03%	1609.3	4.68%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-269	-6.206e+02	0.0000	1580.0	13.52%	1727.0	5.02%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-266	-6.132e+02	0.0000	1513.0	12.94%	1620.2	4.71%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-259	-5.969e+02	0.0000	1669.0	14.28%	1930.4	5.62%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-258	-5.960e+02	0.0000	1235.0	10.56%	1172.1	3.41%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-226	-5.227e+02	0.0000	943.0	8.07%	803.1	2.34%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-225	-5.203e+02	0.0000	2183.0	18.67%	3115.6	9.07%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-224	-5.174e+02	0.0000	2141.0	18.31%	3034.7	8.83%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-222	-5.134e+02	0.0000	678.0	5.80%	439.2	1.28%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-211	-4.867e+02	0.0000	924.0	7.90%	817.0	2.38%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-208	-4.797e+02	0.0000	2120.0	18.14%	3086.7	8.98%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-199	-4.602e+02	0.0000	1346.0	11.51%	1582.1	4.60%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-187	-4.313e+02	0.0000	635.0	5.43%	454.0	1.32%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e-181	-4.189e+02	0.0000	611.0	5.23%	433.6	1.26%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-175	-4.050e+02	0.0000	759.0	6.49%	662.7	1.93%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-171	-3.958e+02	0.0000	564.0	4.82%	391.8	1.14%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-158	-3.647e+02	0.0000	724.0	6.19%	659.0	1.92%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-151	-3.497e+02	0.0000	1043.0	8.92%	1230.3	3.58%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-151	-3.494e+02	0.0000	1417.0	12.12%	1957.7	5.70%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-136	-3.148e+02	0.0000	656.0	5.61%	616.6	1.79%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-125	-2.893e+02	0.0000	1364.0	11.67%	2004.9	5.83%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-125	-2.886e+02	0.0000	310.0	2.65%	161.2	0.47%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-123	-2.851e+02	0.0000	620.0	5.30%	599.9	1.75%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-115	-2.662e+02	0.0000	305.0	2.61%	170.6	0.50%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-105	-2.424e+02	0.0000	416.0	3.56%	337.6	0.98%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-102	-2.352e+02	0.0000	424.0	3.63%	357.7	1.04%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e-95	-2.195e+02	0.0000	484.0	4.14%	471.5	1.37%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-92	-2.131e+02	0.0000	448.0	3.83%	422.8	1.23%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-87	-2.010e+02	0.0000	367.0	3.14%	312.6	0.91%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-86	-1.983e+02	0.0000	843.0	7.21%	1175.2	3.42%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e-79	-1.820e+02	0.0000	234.0	2.00%	147.7	0.43%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-77	-1.782e+02	0.0000	248.0	2.12%	168.1	0.49%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-77	-1.776e+02	0.0000	2153.0	18.42%	4257.4	12.39%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-76	-1.752e+02	0.0000	753.0	6.44%	1053.3	3.06%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-75	-1.730e+02	0.0000	343.0	2.93%	310.5	0.90%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-68	-1.567e+02	0.0000	444.0	3.80%	504.9	1.47%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-64	-1.495e+02	0.0000	306.0	2.62%	283.2	0.82%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-64	-1.489e+02	0.0000	3229.0	27.62%	7210.6	20.98%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-63	-1.467e+02	0.0000	1471.0	12.58%	2755.0	8.02%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-62	-1.446e+02	0.0000	234.0	2.00%	181.5	0.53%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-61	-1.415e+02	0.0000	478.0	4.09%	596.1	1.73%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-60	-1.389e+02	0.0000	229.0	1.96%	180.2	0.52%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-53	-1.241e+02	0.0000	732.0	6.26%	1158.8	3.37%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-53	-1.224e+02	0.0000	248.0	2.12%	228.3	0.66%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-51	-1.187e+02	0.0000	786.0	6.72%	1294.8	3.77%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-50	-1.153e+02	0.0000	1075.0	9.20%	1965.4	5.72%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-48	-1.121e+02	0.0000	901.0	7.71%	1577.5	4.59%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-48	-1.118e+02	0.0000	283.0	2.42%	301.7	0.88%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-48	-1.108e+02	0.0000	114.0	0.98%	57.2	0.17%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-47	-1.088e+02	0.0000	167.0	1.43%	124.1	0.36%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-46	-1.062e+02	0.0000	1328.0	11.36%	2616.0	7.61%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-45	-1.041e+02	0.0000	386.0	3.30%	504.4	1.47%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-45	-1.037e+02	0.0000	868.0	7.43%	1537.7	4.47%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-41	-9.657e+01	0.0000	455.0	3.89%	660.5	1.92%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-41	-9.571e+01	0.0000	602.0	5.15%	973.1	2.83%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-41	-9.475e+01	0.0000	110.0	0.94%	63.3	0.18%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-40	-9.424e+01	0.0000	809.0	6.92%	1442.7	4.20%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-38	-8.859e+01	0.0000	454.0	3.88%	681.6	1.98%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-37	-8.715e+01	0.0000	1286.0	11.00%	2623.0	7.63%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-37	-8.633e+01	0.0000	2282.0	19.52%	5189.4	15.10%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-37	-8.586e+01	0.0000	881.0	7.54%	1648.9	4.80%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e-36	-8.336e+01	0.0000	215.0	1.84%	232.6	0.68%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-35	-8.115e+01	0.0000	2798.0	23.93%	6618.3	19.26%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-34	-7.842e+01	0.0000	3994.0	34.17%	9947.9	28.94%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-34	-7.837e+01	0.0000	1128.0	9.65%	2285.8	6.65%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-33	-7.775e+01	0.0000	545.0	4.66%	913.9	2.66%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-32	-7.449e+01	0.0000	2670.0	22.84%	6337.5	18.44%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-31	-7.340e+01	0.0000	371.0	3.17%	554.9	1.61%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-31	-7.208e+01	0.0000	610.0	5.22%	1082.2	3.15%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-30	-6.911e+01	0.0000	1920.0	16.42%	4382.7	12.75%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-29	-6.841e+01	0.0000	1368.0	11.70%	2954.0	8.59%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-29	-6.834e+01	0.0000	271.0	2.32%	366.8	1.07%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-29	-6.803e+01	0.0000	2798.0	23.93%	6752.2	19.65%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-29	-6.743e+01	0.0000	1155.0	9.88%	2422.2	7.05%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-29	-6.726e+01	0.0000	1249.0	10.68%	2660.3	7.74%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-28	-6.675e+01	0.0000	311.0	2.66%	450.2	1.31%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e-28	-6.448e+01	0.0000	1411.0	12.07%	3094.9	9.01%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-27	-6.417e+01	0.0000	364.0	3.11%	568.3	1.65%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-27	-6.405e+01	0.0000	888.0	7.60%	1782.5	5.19%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e-27	-6.370e+01	0.0000	259.0	2.22%	354.1	1.03%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-26	-6.169e+01	0.0000	147.0	1.26%	152.2	0.44%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-26	-6.162e+01	0.0000	2022.0	17.30%	4722.7	13.74%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-26	-6.139e+01	0.0000	95.0	0.81%	72.3	0.21%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-26	-6.090e+01	0.0000	1490.0	12.75%	3327.8	9.68%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-26	-6.085e+01	0.0000	212.0	1.81%	270.0	0.79%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-26	-6.073e+01	0.0000	1178.0	10.08%	2527.5	7.35%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-25	-5.905e+01	0.0000	758.0	6.48%	1495.2	4.35%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-25	-5.873e+01	0.0000	421.0	3.60%	712.0	2.07%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-25	-5.807e+01	0.0000	773.0	6.61%	1537.4	4.47%
SeqBias: A/T bias	WWWWWWWWWW	1e-25	-5.807e+01	0.0000	10939.0	93.58%	31249.9	90.92%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-24	-5.696e+01	0.0000	1106.0	9.46%	2372.7	6.90%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-24	-5.666e+01	0.0000	813.0	6.95%	1643.1	4.78%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-24	-5.592e+01	0.0000	918.0	7.85%	1907.6	5.55%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-24	-5.579e+01	0.0000	447.0	3.82%	781.1	2.27%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-24	-5.537e+01	0.0000	953.0	8.15%	1998.7	5.82%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-23	-5.482e+01	0.0000	486.0	4.16%	874.1	2.54%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-23	-5.439e+01	0.0000	815.0	6.97%	1662.3	4.84%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-23	-5.305e+01	0.0000	723.0	6.18%	1445.4	4.21%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-23	-5.298e+01	0.0000	670.0	5.73%	1317.3	3.83%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-22	-5.155e+01	0.0000	761.0	6.51%	1547.7	4.50%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-22	-5.145e+01	0.0000	588.0	5.03%	1129.9	3.29%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-22	-5.096e+01	0.0000	66.0	0.56%	43.9	0.13%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-21	-4.989e+01	0.0000	240.0	2.05%	353.2	1.03%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-21	-4.980e+01	0.0000	1350.0	11.55%	3058.7	8.90%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-21	-4.978e+01	0.0000	3241.0	27.72%	8197.8	23.85%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-21	-4.927e+01	0.0000	831.0	7.11%	1735.7	5.05%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-20	-4.771e+01	0.0000	972.0	8.31%	2101.1	6.11%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-20	-4.751e+01	0.0000	2031.0	17.37%	4894.7	14.24%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-20	-4.717e+01	0.0000	161.0	1.38%	204.3	0.59%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-20	-4.714e+01	0.0000	975.0	8.34%	2113.5	6.15%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-20	-4.710e+01	0.0000	1091.0	9.33%	2411.0	7.01%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-20	-4.693e+01	0.0000	243.0	2.08%	368.7	1.07%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-20	-4.689e+01	0.0000	1351.0	11.56%	3087.7	8.98%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e-20	-4.653e+01	0.0000	1191.0	10.19%	2673.3	7.78%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-20	-4.639e+01	0.0000	1058.0	9.05%	2331.6	6.78%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-19	-4.559e+01	0.0000	1194.0	10.21%	2689.9	7.83%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-19	-4.467e+01	0.0000	3111.0	26.61%	7905.6	23.00%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-19	-4.439e+01	0.0000	682.0	5.83%	1398.8	4.07%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-19	-4.392e+01	0.0000	996.0	8.52%	2192.1	6.38%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-19	-4.392e+01	0.0000	971.0	8.31%	2128.6	6.19%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-18	-4.365e+01	0.0000	109.0	0.93%	117.5	0.34%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-18	-4.364e+01	0.0000	376.0	3.22%	672.7	1.96%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-18	-4.357e+01	0.0000	554.0	4.74%	1091.5	3.18%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-18	-4.350e+01	0.0000	344.0	2.94%	600.6	1.75%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-18	-4.343e+01	0.0000	2763.0	23.64%	6953.8	20.23%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-18	-4.310e+01	0.0000	1837.0	15.71%	4420.7	12.86%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-18	-4.309e+01	0.0000	525.0	4.49%	1024.4	2.98%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-18	-4.300e+01	0.0000	2131.0	18.23%	5219.2	15.19%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-18	-4.216e+01	0.0000	990.0	8.47%	2191.8	6.38%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-18	-4.172e+01	0.0000	1135.0	9.71%	2570.6	7.48%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-18	-4.169e+01	0.0000	1103.0	9.44%	2487.6	7.24%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-18	-4.146e+01	0.0000	527.0	4.51%	1039.0	3.02%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-17	-4.122e+01	0.0000	723.0	6.18%	1521.9	4.43%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-17	-4.027e+01	0.0000	1733.0	14.82%	4172.6	12.14%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-17	-3.996e+01	0.0000	134.0	1.15%	169.4	0.49%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-17	-3.937e+01	0.0000	577.0	4.94%	1172.7	3.41%
SeqBias: TA-repeat	TATATATATA	1e-17	-3.919e+01	0.0000	4105.0	35.12%	10801.6	31.43%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-16	-3.806e+01	0.0000	172.0	1.47%	248.2	0.72%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-16	-3.785e+01	0.0000	348.0	2.98%	634.2	1.85%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-16	-3.745e+01	0.0000	427.0	3.65%	821.9	2.39%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-16	-3.742e+01	0.0000	3915.0	33.49%	10289.6	29.94%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-16	-3.701e+01	0.0000	535.0	4.58%	1084.6	3.16%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-16	-3.696e+01	0.0000	523.0	4.47%	1055.9	3.07%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-16	-3.693e+01	0.0000	880.0	7.53%	1952.6	5.68%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-16	-3.685e+01	0.0000	767.0	6.56%	1664.4	4.84%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-15	-3.669e+01	0.0000	175.0	1.50%	258.7	0.75%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-15	-3.607e+01	0.0000	81.0	0.69%	82.3	0.24%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-15	-3.528e+01	0.0000	617.0	5.28%	1298.3	3.78%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-15	-3.517e+01	0.0000	2554.0	21.85%	6491.1	18.89%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-14	-3.451e+01	0.0000	1898.0	16.24%	4691.8	13.65%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-14	-3.346e+01	0.0000	2213.0	18.93%	5571.2	16.21%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.307e+01	0.0000	627.0	5.36%	1339.3	3.90%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-14	-3.282e+01	0.0000	2479.0	21.21%	6318.6	18.38%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-14	-3.242e+01	0.0000	132.0	1.13%	183.8	0.53%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-14	-3.225e+01	0.0000	1436.0	12.28%	3466.5	10.09%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-13	-3.153e+01	0.0000	775.0	6.63%	1729.0	5.03%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-13	-3.150e+01	0.0000	344.0	2.94%	656.7	1.91%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-13	-3.117e+01	0.0000	507.0	4.34%	1053.5	3.07%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-13	-3.105e+01	0.0000	1655.0	14.16%	4074.3	11.85%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-13	-3.077e+01	0.0000	1242.0	10.62%	2963.2	8.62%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-13	-3.070e+01	0.0000	275.0	2.35%	499.1	1.45%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-13	-3.019e+01	0.0000	299.0	2.56%	557.0	1.62%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-12	-2.979e+01	0.0000	1299.0	11.11%	3127.1	9.10%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-12	-2.918e+01	0.0000	233.0	1.99%	410.8	1.20%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-12	-2.894e+01	0.0000	9483.0	81.12%	26950.1	78.41%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-12	-2.882e+01	0.0000	4026.0	34.44%	10765.6	31.32%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-12	-2.839e+01	0.0000	974.0	8.33%	2277.9	6.63%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-12	-2.838e+01	0.0000	559.0	4.78%	1203.3	3.50%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-12	-2.797e+01	0.0000	810.0	6.93%	1851.9	5.39%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-11	-2.738e+01	0.0000	260.0	2.22%	480.9	1.40%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-11	-2.715e+01	0.0000	966.0	8.26%	2269.7	6.60%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-11	-2.714e+01	0.0000	470.0	4.02%	989.8	2.88%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e-11	-2.702e+01	0.0000	1246.0	10.66%	3019.0	8.78%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-11	-2.699e+01	0.0000	4291.0	36.71%	11564.5	33.65%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-11	-2.687e+01	0.0000	462.0	3.95%	971.1	2.83%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-11	-2.639e+01	0.0000	90.0	0.77%	116.5	0.34%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-11	-2.623e+01	0.0000	1402.0	11.99%	3450.6	10.04%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-11	-2.563e+01	0.0000	543.0	4.64%	1184.2	3.45%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-11	-2.554e+01	0.0000	1106.0	9.46%	2660.8	7.74%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-10	-2.509e+01	0.0000	616.0	5.27%	1375.8	4.00%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-10	-2.492e+01	0.0000	265.0	2.27%	504.9	1.47%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-10	-2.479e+01	0.0000	386.0	3.30%	797.3	2.32%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-10	-2.470e+01	0.0000	758.0	6.48%	1747.2	5.08%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-10	-2.440e+01	0.0000	49.0	0.42%	47.6	0.14%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-10	-2.432e+01	0.0000	1413.0	12.09%	3506.7	10.20%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-10	-2.383e+01	0.0000	981.0	8.39%	2346.1	6.83%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-10	-2.349e+01	0.0000	1346.0	11.51%	3335.9	9.71%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-10	-2.345e+01	0.0000	669.0	5.72%	1527.1	4.44%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-10	-2.324e+01	0.0000	265.0	2.27%	513.1	1.49%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-9	-2.273e+01	0.0000	978.0	8.37%	2351.2	6.84%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-9	-2.268e+01	0.0000	1185.0	10.14%	2909.5	8.47%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-9	-2.262e+01	0.0000	114.0	0.98%	174.7	0.51%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-9	-2.245e+01	0.0000	871.0	7.45%	2069.6	6.02%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-9	-2.227e+01	0.0000	1758.0	15.04%	4485.3	13.05%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-9	-2.225e+01	0.0000	321.0	2.75%	654.2	1.90%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-9	-2.215e+01	0.0000	1707.0	14.60%	4346.9	12.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-9	-2.208e+01	0.0000	828.0	7.08%	1959.6	5.70%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-9	-2.187e+01	0.0000	1280.0	10.95%	3178.5	9.25%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e-9	-2.171e+01	0.0000	409.0	3.50%	876.5	2.55%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-9	-2.156e+01	0.0000	1946.0	16.65%	5019.5	14.60%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-9	-2.139e+01	0.0000	810.0	6.93%	1919.3	5.58%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-9	-2.135e+01	0.0000	1260.0	10.78%	3131.8	9.11%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-9	-2.132e+01	0.0000	818.0	7.00%	1941.0	5.65%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-9	-2.118e+01	0.0000	159.0	1.36%	277.4	0.81%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-9	-2.107e+01	0.0000	2128.0	18.20%	5536.9	16.11%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-9	-2.095e+01	0.0000	489.0	4.18%	1085.7	3.16%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-9	-2.081e+01	0.0000	1502.0	12.85%	3802.9	11.06%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-9	-2.077e+01	0.0000	1051.0	8.99%	2572.0	7.48%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-8	-2.061e+01	0.0000	62.0	0.53%	76.3	0.22%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-8	-2.038e+01	0.0000	676.0	5.78%	1576.4	4.59%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-8	-2.020e+01	0.0000	186.0	1.59%	343.7	1.00%
SeqBias: C/A-bias	MMMMMMMMMM	1e-8	-2.008e+01	0.0000	11484.0	98.24%	33481.8	97.42%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-8	-1.955e+01	0.0000	3603.0	30.82%	9753.9	28.38%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-1.920e+01	0.0000	235.0	2.01%	464.8	1.35%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-8	-1.902e+01	0.0000	623.0	5.33%	1451.1	4.22%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-8	-1.886e+01	0.0000	247.0	2.11%	495.5	1.44%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-7	-1.833e+01	0.0000	1375.0	11.76%	3492.0	10.16%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-7	-1.808e+01	0.0000	1343.0	11.49%	3409.0	9.92%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-7	-1.732e+01	0.0000	1881.0	16.09%	4916.2	14.30%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-7	-1.710e+01	0.0000	671.0	5.74%	1599.4	4.65%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-7	-1.710e+01	0.0000	1081.0	9.25%	2705.8	7.87%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-7	-1.687e+01	0.0000	1151.0	9.85%	2900.6	8.44%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-7	-1.666e+01	0.0000	1801.0	15.41%	4705.4	13.69%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-7	-1.655e+01	0.0000	806.0	6.89%	1967.7	5.73%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-7	-1.653e+01	0.0000	496.0	4.24%	1144.6	3.33%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-7	-1.642e+01	0.0000	461.0	3.94%	1054.6	3.07%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-7	-1.636e+01	0.0000	409.0	3.50%	920.2	2.68%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-7	-1.621e+01	0.0000	471.0	4.03%	1082.8	3.15%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-7	-1.613e+01	0.0000	1814.0	15.52%	4752.5	13.83%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-6	-1.599e+01	0.0000	259.0	2.22%	543.9	1.58%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-6	-1.599e+01	0.0000	305.0	2.61%	658.8	1.92%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.593e+01	0.0000	2149.0	18.38%	5698.7	16.58%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-6	-1.590e+01	0.0000	446.0	3.82%	1020.4	2.97%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-6	-1.590e+01	0.0000	274.0	2.34%	581.4	1.69%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-6	-1.577e+01	0.0000	1662.0	14.22%	4334.6	12.61%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-6	-1.572e+01	0.0000	416.0	3.56%	944.7	2.75%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-6	-1.559e+01	0.0000	299.0	2.56%	646.9	1.88%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-6	-1.535e+01	0.0000	237.0	2.03%	493.4	1.44%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-6	-1.507e+01	0.0000	1938.0	16.58%	5122.3	14.90%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-6	-1.490e+01	0.0000	408.0	3.49%	932.0	2.71%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-6	-1.488e+01	0.0000	499.0	4.27%	1169.1	3.40%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-6	-1.479e+01	0.0000	65.0	0.56%	96.4	0.28%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-6	-1.474e+01	0.0000	263.0	2.25%	562.9	1.64%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-6	-1.470e+01	0.0000	1457.0	12.46%	3783.5	11.01%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-6	-1.462e+01	0.0000	2104.0	18.00%	5600.6	16.30%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-6	-1.453e+01	0.0000	1385.0	11.85%	3586.5	10.44%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-6	-1.447e+01	0.0000	261.0	2.23%	559.7	1.63%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-6	-1.445e+01	0.0000	1699.0	14.53%	4464.2	12.99%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-6	-1.441e+01	0.0000	410.0	3.51%	941.2	2.74%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-6	-1.420e+01	0.0000	1218.0	10.42%	3129.2	9.10%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-6	-1.414e+01	0.0000	2306.0	19.73%	6183.7	17.99%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-6	-1.414e+01	0.0000	505.0	4.32%	1193.2	3.47%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e-6	-1.404e+01	0.0000	448.0	3.83%	1044.3	3.04%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-5	-1.381e+01	0.0000	730.0	6.24%	1799.4	5.24%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-5	-1.378e+01	0.0000	2213.0	18.93%	5928.6	17.25%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-5	-1.371e+01	0.0000	463.0	3.96%	1087.2	3.16%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-5	-1.364e+01	0.0000	490.0	4.19%	1159.6	3.37%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-5	-1.363e+01	0.0000	479.0	4.10%	1130.5	3.29%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-5	-1.360e+01	0.0000	222.0	1.90%	468.8	1.36%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-5	-1.351e+01	0.0000	964.0	8.25%	2441.7	7.10%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-5	-1.349e+01	0.0000	1654.0	14.15%	4358.2	12.68%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-5	-1.333e+01	0.0000	195.0	1.67%	403.6	1.17%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-5	-1.322e+01	0.0000	2658.0	22.74%	7208.0	20.97%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-5	-1.322e+01	0.0000	860.0	7.36%	2162.0	6.29%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-5	-1.313e+01	0.0000	997.0	8.53%	2538.7	7.39%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-5	-1.299e+01	0.0000	90.0	0.77%	156.3	0.45%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-5	-1.270e+01	0.0000	1203.0	10.29%	3115.9	9.07%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-5	-1.268e+01	0.0000	1727.0	14.77%	4581.8	13.33%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-5	-1.263e+01	0.0000	776.0	6.64%	1941.1	5.65%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-5	-1.255e+01	0.0000	866.0	7.41%	2188.8	6.37%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-5	-1.244e+01	0.0000	100.0	0.86%	181.5	0.53%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-5	-1.235e+01	0.0000	265.0	2.27%	586.4	1.71%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-5	-1.232e+01	0.0000	1717.0	14.69%	4562.0	13.27%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-5	-1.227e+01	0.0000	955.0	8.17%	2437.2	7.09%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-5	-1.184e+01	0.0000	393.0	3.36%	923.9	2.69%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-5	-1.182e+01	0.0000	74.0	0.63%	125.2	0.36%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-5	-1.182e+01	0.0000	287.0	2.46%	647.5	1.88%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-5	-1.180e+01	0.0000	253.0	2.16%	560.2	1.63%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-5	-1.177e+01	0.0000	2346.0	20.07%	6357.9	18.50%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-5	-1.169e+01	0.0000	137.0	1.17%	272.1	0.79%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-5	-1.167e+01	0.0000	412.0	3.52%	975.2	2.84%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-5	-1.166e+01	0.0000	754.0	6.45%	1896.7	5.52%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-5	-1.158e+01	0.0000	878.0	7.51%	2237.2	6.51%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-4	-1.149e+01	0.0000	2012.0	17.21%	5415.5	15.76%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-4	-1.143e+01	0.0000	35.0	0.30%	45.3	0.13%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.135e+01	0.0000	8.0	0.07%	3.9	0.01%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-4	-1.117e+01	0.0000	1280.0	10.95%	3360.9	9.78%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-1.112e+01	0.0000	60.0	0.51%	97.8	0.28%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-4	-1.092e+01	0.0001	943.0	8.07%	2428.8	7.07%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-4	-1.025e+01	0.0001	161.0	1.38%	340.2	0.99%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-4	-1.020e+01	0.0001	355.0	3.04%	841.7	2.45%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-4	-9.885e+00	0.0002	81.0	0.69%	149.9	0.44%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e-4	-9.780e+00	0.0002	97.0	0.83%	187.2	0.54%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-4	-9.778e+00	0.0002	2030.0	17.37%	5512.7	16.04%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e-4	-9.771e+00	0.0002	13.0	0.11%	10.3	0.03%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-4	-9.640e+00	0.0002	720.0	6.16%	1836.1	5.34%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-4	-9.542e+00	0.0002	420.0	3.59%	1023.0	2.98%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-4	-9.527e+00	0.0002	2652.0	22.69%	7298.1	21.23%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-4	-9.501e+00	0.0002	93.0	0.80%	179.1	0.52%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-4	-9.415e+00	0.0003	388.0	3.32%	938.0	2.73%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-4	-9.414e+00	0.0003	1902.0	16.27%	5158.4	15.01%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-4	-9.367e+00	0.0003	287.0	2.46%	671.9	1.95%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-4	-9.287e+00	0.0003	157.0	1.34%	337.9	0.98%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-3	-9.194e+00	0.0003	798.0	6.83%	2059.0	5.99%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-3	-9.187e+00	0.0003	400.0	3.42%	973.5	2.83%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-3	-8.942e+00	0.0004	1040.0	8.90%	2737.2	7.96%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-8.913e+00	0.0004	454.0	3.88%	1122.2	3.27%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e-3	-8.803e+00	0.0005	91.0	0.78%	178.7	0.52%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-3	-8.733e+00	0.0005	3514.0	30.06%	9811.0	28.55%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e-3	-8.571e+00	0.0006	20.0	0.17%	23.2	0.07%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-3	-8.566e+00	0.0006	554.0	4.74%	1399.8	4.07%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-3	-8.430e+00	0.0007	11635.0	99.53%	34116.6	99.27%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-3	-8.408e+00	0.0007	894.0	7.65%	2341.5	6.81%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-3	-8.379e+00	0.0007	2825.0	24.17%	7834.5	22.80%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-3	-8.344e+00	0.0007	1312.0	11.22%	3515.5	10.23%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-3	-8.275e+00	0.0008	501.0	4.29%	1259.8	3.67%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e-3	-8.238e+00	0.0008	206.0	1.76%	471.8	1.37%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-8.201e+00	0.0008	158.0	1.35%	348.8	1.01%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-3	-8.111e+00	0.0009	3709.0	31.73%	10400.1	30.26%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-3	-7.980e+00	0.0010	151.0	1.29%	332.4	0.97%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-3	-7.972e+00	0.0010	534.0	4.57%	1354.2	3.94%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-3	-7.909e+00	0.0011	119.0	1.02%	252.5	0.73%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-3	-7.892e+00	0.0011	1530.0	13.09%	4144.4	12.06%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e-3	-7.799e+00	0.0012	26.0	0.22%	36.1	0.10%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-3	-7.642e+00	0.0014	251.0	2.15%	595.0	1.73%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-7.455e+00	0.0017	82.0	0.70%	164.8	0.48%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-3	-7.318e+00	0.0019	583.0	4.99%	1500.1	4.36%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-3	-7.271e+00	0.0020	483.0	4.13%	1226.3	3.57%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-3	-7.265e+00	0.0020	686.0	5.87%	1786.7	5.20%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-7.261e+00	0.0020	235.0	2.01%	557.9	1.62%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-3	-7.226e+00	0.0021	121.0	1.04%	262.7	0.76%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-3	-7.167e+00	0.0022	521.0	4.46%	1332.6	3.88%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-7.137e+00	0.0022	131.0	1.12%	288.4	0.84%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-3	-7.113e+00	0.0023	9.0	0.08%	7.3	0.02%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-3	-6.980e+00	0.0026	57.0	0.49%	107.0	0.31%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-3	-6.939e+00	0.0027	367.0	3.14%	915.7	2.66%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-3	-6.916e+00	0.0028	1633.0	13.97%	4466.1	12.99%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-2	-6.789e+00	0.0031	736.0	6.30%	1935.8	5.63%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-2	-6.771e+00	0.0032	1583.0	13.54%	4328.6	12.59%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-2	-6.742e+00	0.0033	17.0	0.15%	21.4	0.06%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-2	-6.742e+00	0.0033	143.0	1.22%	322.1	0.94%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-6.624e+00	0.0037	191.0	1.63%	448.5	1.30%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-6.572e+00	0.0038	229.0	1.96%	549.1	1.60%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-6.564e+00	0.0039	72.0	0.62%	145.8	0.42%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-2	-6.557e+00	0.0039	429.0	3.67%	1090.9	3.17%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-2	-6.489e+00	0.0041	445.0	3.81%	1135.6	3.30%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-2	-6.489e+00	0.0041	445.0	3.81%	1135.6	3.30%
SeqBias: GA-repeat	GAGAGAGAGA	1e-2	-6.479e+00	0.0042	3483.0	29.79%	9812.0	28.55%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e-2	-6.400e+00	0.0045	471.0	4.03%	1208.3	3.52%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-2	-6.314e+00	0.0049	1368.0	11.70%	3730.1	10.85%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-6.298e+00	0.0049	25.0	0.21%	38.5	0.11%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-2	-6.294e+00	0.0050	187.0	1.60%	441.7	1.29%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-2	-6.278e+00	0.0050	7.0	0.06%	5.5	0.02%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.270e+00	0.0051	24.0	0.21%	36.2	0.11%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-2	-6.260e+00	0.0051	910.0	7.78%	2435.8	7.09%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-2	-6.247e+00	0.0051	426.0	3.64%	1087.4	3.16%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-6.190e+00	0.0054	798.0	6.83%	2122.2	6.17%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-2	-6.129e+00	0.0058	442.0	3.78%	1133.1	3.30%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-2	-6.075e+00	0.0061	214.0	1.83%	515.6	1.50%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-6.016e+00	0.0064	276.0	2.36%	682.5	1.99%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-6.003e+00	0.0065	171.0	1.46%	402.6	1.17%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-2	-5.975e+00	0.0066	945.0	8.08%	2541.9	7.40%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-2	-5.941e+00	0.0069	365.0	3.12%	925.4	2.69%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-5.910e+00	0.0071	63.0	0.54%	127.9	0.37%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-2	-5.906e+00	0.0071	30.0	0.26%	50.3	0.15%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-2	-5.894e+00	0.0071	123.0	1.05%	278.9	0.81%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-2	-5.888e+00	0.0072	427.0	3.65%	1096.5	3.19%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-2	-5.884e+00	0.0072	221.0	1.89%	536.0	1.56%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.880e+00	0.0072	15.0	0.13%	19.2	0.06%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-2	-5.796e+00	0.0078	1964.0	16.80%	5452.3	15.86%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-5.783e+00	0.0079	43.0	0.37%	80.5	0.23%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-2	-5.637e+00	0.0091	425.0	3.64%	1095.8	3.19%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-2	-5.618e+00	0.0092	321.0	2.75%	810.0	2.36%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-2	-5.599e+00	0.0094	1157.0	9.90%	3152.4	9.17%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-2	-5.535e+00	0.0100	216.0	1.85%	527.7	1.54%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.522e+00	0.0101	155.0	1.33%	365.2	1.06%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-2	-5.502e+00	0.0103	1021.0	8.73%	2769.5	8.06%
SeqBias: G/A bias	RRRRRRRRRR	1e-2	-5.479e+00	0.0105	11255.0	96.28%	32923.1	95.79%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-2	-5.456e+00	0.0107	276.0	2.36%	690.7	2.01%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-2	-5.418e+00	0.0111	1985.0	16.98%	5527.4	16.08%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-2	-5.377e+00	0.0115	229.0	1.96%	564.5	1.64%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-2	-5.377e+00	0.0115	229.0	1.96%	564.7	1.64%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-2	-5.350e+00	0.0118	128.0	1.09%	296.9	0.86%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e-2	-5.314e+00	0.0122	222.0	1.90%	546.0	1.59%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-2	-5.271e+00	0.0127	96.0	0.82%	214.8	0.63%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-5.260e+00	0.0128	83.0	0.71%	181.2	0.53%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-2	-5.208e+00	0.0134	129.0	1.10%	300.1	0.87%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-2	-5.134e+00	0.0144	779.0	6.66%	2095.9	6.10%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-2	-5.123e+00	0.0145	1651.0	14.12%	4579.3	13.32%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-2	-5.046e+00	0.0157	44.0	0.38%	86.1	0.25%
SeqBias: CG bias	SSSSSSSSSS	1e-2	-4.998e+00	0.0164	3619.0	30.96%	10278.9	29.91%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-2	-4.894e+00	0.0182	1159.0	9.91%	3180.3	9.25%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-2	-4.887e+00	0.0182	1698.0	14.53%	4723.1	13.74%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-2	-4.879e+00	0.0183	482.0	4.12%	1268.9	3.69%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-4.872e+00	0.0184	1033.0	8.84%	2822.1	8.21%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-4.838e+00	0.0190	21.0	0.18%	34.4	0.10%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-4.815e+00	0.0194	380.0	3.25%	986.5	2.87%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-2	-4.743e+00	0.0208	276.0	2.36%	701.8	2.04%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-4.667e+00	0.0224	67.0	0.57%	145.7	0.42%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-2	-4.651e+00	0.0227	92.0	0.79%	209.0	0.61%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-2	-4.647e+00	0.0228	1021.0	8.73%	2795.5	8.13%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.554e+00	0.0249	512.0	4.38%	1359.5	3.96%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-4.551e+00	0.0249	140.0	1.20%	336.7	0.98%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-1	-4.547e+00	0.0250	80.0	0.68%	179.7	0.52%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-1	-4.469e+00	0.0269	3080.0	26.35%	8738.6	25.43%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-1	-4.457e+00	0.0272	24.0	0.21%	42.6	0.12%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-1	-4.426e+00	0.0280	297.0	2.54%	764.7	2.22%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-1	-4.416e+00	0.0282	1085.0	9.28%	2985.7	8.69%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-4.348e+00	0.0301	26.0	0.22%	47.4	0.14%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-4.336e+00	0.0304	829.0	7.09%	2259.1	6.57%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-4.331e+00	0.0305	325.0	2.78%	843.4	2.45%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-1	-4.277e+00	0.0321	25.0	0.21%	45.4	0.13%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e-1	-4.256e+00	0.0327	157.0	1.34%	385.9	1.12%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-1	-4.215e+00	0.0340	923.0	7.90%	2530.2	7.36%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-1	-4.212e+00	0.0340	1935.0	16.55%	5434.2	15.81%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-1	-4.177e+00	0.0352	1094.0	9.36%	3019.1	8.78%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-1	-4.089e+00	0.0383	319.0	2.73%	831.4	2.42%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-1	-4.041e+00	0.0401	1717.0	14.69%	4813.1	14.00%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.995e+00	0.0419	48.0	0.41%	102.4	0.30%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-3.992e+00	0.0419	82.0	0.70%	189.5	0.55%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-1	-3.958e+00	0.0433	16.0	0.14%	26.8	0.08%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-3.832e+00	0.0490	288.0	2.46%	750.1	2.18%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-1	-3.826e+00	0.0492	357.0	3.05%	943.0	2.74%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.819e+00	0.0494	81.0	0.69%	188.6	0.55%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-3.781e+00	0.0512	1381.0	11.81%	3857.2	11.22%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-3.686e+00	0.0562	874.0	7.48%	2408.9	7.01%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-3.675e+00	0.0567	189.0	1.62%	480.4	1.40%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-1	-3.586e+00	0.0618	79.0	0.68%	185.0	0.54%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.529e+00	0.0651	206.0	1.76%	529.6	1.54%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-1	-3.529e+00	0.0651	206.0	1.76%	529.7	1.54%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-1	-3.515e+00	0.0659	2035.0	17.41%	5757.5	16.75%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-3.494e+00	0.0672	532.0	4.55%	1442.0	4.20%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e-1	-3.468e+00	0.0688	41.0	0.35%	88.3	0.26%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-3.467e+00	0.0688	149.0	1.27%	374.0	1.09%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-3.459e+00	0.0691	791.0	6.77%	2179.8	6.34%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-1	-3.450e+00	0.0696	563.0	4.82%	1531.1	4.45%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-1	-3.394e+00	0.0735	34.0	0.29%	71.1	0.21%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.364e+00	0.0755	22.0	0.19%	42.1	0.12%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-3.311e+00	0.0794	35.0	0.30%	74.7	0.22%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.301e+00	0.0800	505.0	4.32%	1371.2	3.99%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.288e+00	0.0809	103.0	0.88%	252.8	0.74%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e-1	-3.286e+00	0.0809	237.0	2.03%	619.7	1.80%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.284e+00	0.0809	612.0	5.24%	1675.8	4.88%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-1	-3.187e+00	0.0889	323.0	2.76%	861.7	2.51%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.177e+00	0.0896	891.0	7.62%	2475.4	7.20%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.108e+00	0.0959	94.0	0.80%	230.5	0.67%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.076e+00	0.0988	156.0	1.33%	399.2	1.16%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-3.074e+00	0.0988	2.0	0.02%	0.9	0.00%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1	-3.073e+00	0.0988	21.0	0.18%	41.3	0.12%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.044e+00	0.1014	53.0	0.45%	122.1	0.36%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.040e+00	0.1015	11.0	0.09%	18.7	0.05%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-1	-2.998e+00	0.1056	567.0	4.85%	1556.9	4.53%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-2.979e+00	0.1075	71.0	0.61%	170.5	0.50%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.934e+00	0.1122	218.0	1.86%	573.7	1.67%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.933e+00	0.1122	43.0	0.37%	98.0	0.29%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.926e+00	0.1126	9.0	0.08%	14.4	0.04%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-2.916e+00	0.1135	258.0	2.21%	685.3	1.99%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-1	-2.894e+00	0.1157	467.0	3.99%	1275.1	3.71%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.880e+00	0.1171	107.0	0.92%	268.8	0.78%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-2.847e+00	0.1209	1572.0	13.45%	4452.1	12.95%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-2.844e+00	0.1209	808.0	6.91%	2250.5	6.55%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-1	-2.835e+00	0.1218	393.0	3.36%	1068.0	3.11%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.807e+00	0.1250	235.0	2.01%	623.1	1.81%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.794e+00	0.1263	325.0	2.78%	876.2	2.55%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-1	-2.776e+00	0.1284	2048.0	17.52%	5836.0	16.98%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.761e+00	0.1301	69.0	0.59%	167.4	0.49%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.739e+00	0.1326	959.0	8.20%	2688.6	7.82%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-1	-2.717e+00	0.1353	1126.0	9.63%	3170.9	9.23%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-1	-2.712e+00	0.1358	77.0	0.66%	189.7	0.55%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-2.706e+00	0.1360	19.0	0.16%	38.7	0.11%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-2.706e+00	0.1360	19.0	0.16%	38.2	0.11%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-1	-2.677e+00	0.1398	1108.0	9.48%	3120.3	9.08%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-1	-2.606e+00	0.1498	118.0	1.01%	303.0	0.88%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-1	-2.579e+00	0.1536	79.0	0.68%	196.3	0.57%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-1	-2.544e+00	0.1586	1264.0	10.81%	3577.6	10.41%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-1	-2.516e+00	0.1628	967.0	8.27%	2721.9	7.92%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e-1	-2.515e+00	0.1628	619.0	5.30%	1721.5	5.01%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e-1	-2.484e+00	0.1674	143.0	1.22%	373.1	1.09%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.431e+00	0.1762	161.0	1.38%	424.5	1.24%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e-1	-2.414e+00	0.1789	47.0	0.40%	112.1	0.33%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.396e+00	0.1817	13.0	0.11%	25.6	0.07%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-2.369e+00	0.1865	64.0	0.55%	158.5	0.46%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.330e+00	0.1935	38.0	0.33%	89.8	0.26%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-1	-2.317e+00	0.1957	269.0	2.30%	730.8	2.13%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.243e+00	0.2101	330.0	2.82%	905.2	2.63%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.229e+00	0.2127	97.0	0.83%	250.2	0.73%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-2.229e+00	0.2127	1723.0	14.74%	4926.4	14.33%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.185e+00	0.2214	219.0	1.87%	592.5	1.72%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.142e+00	0.2306	82.0	0.70%	210.1	0.61%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.125e+00	0.2341	79.0	0.68%	203.0	0.59%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.098e+00	0.2402	20.0	0.17%	44.7	0.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.065e+00	0.2477	190.0	1.63%	513.9	1.50%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.052e+00	0.2504	105.0	0.90%	275.9	0.80%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.051e+00	0.2504	1287.0	11.01%	3671.5	10.68%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.043e+00	0.2517	6.0	0.05%	10.0	0.03%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-2.039e+00	0.2523	80.0	0.68%	206.7	0.60%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.032e+00	0.2536	26.0	0.22%	60.2	0.18%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-2.024e+00	0.2550	268.0	2.29%	735.9	2.14%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-2.024e+00	0.2550	294.0	2.51%	809.1	2.35%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-2.001e+00	0.2601	1391.0	11.90%	3976.0	11.57%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-2.000e+00	0.2601	193.0	1.65%	523.7	1.52%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.978e+00	0.2651	56.0	0.48%	141.8	0.41%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.936e+00	0.2759	1371.0	11.73%	3922.8	11.41%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.936e+00	0.2759	34.0	0.29%	82.0	0.24%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.896e+00	0.2860	286.0	2.45%	790.2	2.30%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.895e+00	0.2860	4.0	0.03%	6.7	0.02%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.887e+00	0.2875	337.0	2.88%	936.6	2.73%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.839e+00	0.3013	7.0	0.06%	13.6	0.04%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.824e+00	0.3050	41.0	0.35%	102.5	0.30%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.806e+00	0.3100	217.0	1.86%	596.2	1.73%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.797e+00	0.3125	512.0	4.38%	1442.1	4.20%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.775e+00	0.3186	389.0	3.33%	1089.4	3.17%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.755e+00	0.3246	289.0	2.47%	803.7	2.34%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.718e+00	0.3362	724.0	6.19%	2058.1	5.99%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.716e+00	0.3362	71.0	0.61%	186.3	0.54%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.716e+00	0.3362	71.0	0.61%	186.3	0.54%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-1.697e+00	0.3413	763.0	6.53%	2172.5	6.32%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.691e+00	0.3427	423.0	3.62%	1190.2	3.46%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.681e+00	0.3456	36.0	0.31%	91.0	0.26%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.679e+00	0.3456	539.0	4.61%	1525.7	4.44%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.670e+00	0.3482	525.0	4.49%	1485.9	4.32%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.646e+00	0.3560	332.0	2.84%	930.9	2.71%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.640e+00	0.3573	34.0	0.29%	85.7	0.25%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.640e+00	0.3573	72.0	0.62%	190.8	0.56%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.630e+00	0.3597	115.0	0.98%	311.8	0.91%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.599e+00	0.3703	930.0	7.96%	2662.4	7.75%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.599e+00	0.3703	32.0	0.27%	80.8	0.24%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.584e+00	0.3745	87.0	0.74%	233.9	0.68%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.557e+00	0.3841	30.0	0.26%	75.2	0.22%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.556e+00	0.3841	74.0	0.63%	198.0	0.58%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.553e+00	0.3843	311.0	2.66%	873.1	2.54%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.550e+00	0.3848	288.0	2.46%	807.5	2.35%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.547e+00	0.3851	80.0	0.68%	214.6	0.62%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.537e+00	0.3885	1284.0	10.98%	3696.7	10.76%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.533e+00	0.3891	1333.0	11.40%	3839.6	11.17%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.529e+00	0.3901	141.0	1.21%	387.3	1.13%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.496e+00	0.4023	45.0	0.38%	117.9	0.34%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.467e+00	0.4134	304.0	2.60%	856.8	2.49%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.440e+00	0.4243	44.0	0.38%	115.6	0.34%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.435e+00	0.4256	49.0	0.42%	129.2	0.38%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.412e+00	0.4347	711.0	6.08%	2037.8	5.93%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.402e+00	0.4383	291.0	2.49%	821.3	2.39%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-1.395e+00	0.4403	180.0	1.54%	502.2	1.46%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.365e+00	0.4531	511.0	4.37%	1459.3	4.25%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-1.362e+00	0.4535	278.0	2.38%	785.3	2.28%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.317e+00	0.4738	1367.0	11.69%	3955.6	11.51%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.304e+00	0.4788	21.0	0.18%	53.0	0.15%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.264e+00	0.4978	118.0	1.01%	328.5	0.96%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.260e+00	0.4990	6.0	0.05%	13.9	0.04%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.256e+00	0.5001	127.0	1.09%	355.0	1.03%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.252e+00	0.5010	48.0	0.41%	129.1	0.38%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-1.252e+00	0.5010	696.0	5.95%	2003.8	5.83%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.231e+00	0.5102	16.0	0.14%	40.4	0.12%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.227e+00	0.5113	157.0	1.34%	442.0	1.29%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.222e+00	0.5128	706.0	6.04%	2034.5	5.92%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.215e+00	0.5155	425.0	3.64%	1217.6	3.54%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-1.211e+00	0.5165	1276.0	10.92%	3698.8	10.76%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.197e+00	0.5229	403.0	3.45%	1154.2	3.36%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.186e+00	0.5277	816.0	6.98%	2357.4	6.86%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.181e+00	0.5296	1004.0	8.59%	2906.5	8.46%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.164e+00	0.5376	115.0	0.98%	322.9	0.94%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.164e+00	0.5376	123.0	1.05%	345.6	1.01%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-1.156e+00	0.5402	674.0	5.77%	1945.2	5.66%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.144e+00	0.5459	1028.0	8.79%	2979.7	8.67%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.142e+00	0.5462	120.0	1.03%	337.1	0.98%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.137e+00	0.5481	173.0	1.48%	490.6	1.43%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.128e+00	0.5518	91.0	0.78%	254.9	0.74%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.122e+00	0.5543	77.0	0.66%	214.5	0.62%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.113e+00	0.5581	708.0	6.06%	2047.6	5.96%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.101e+00	0.5641	17.0	0.15%	44.2	0.13%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.096e+00	0.5663	3.0	0.03%	6.9	0.02%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.061e+00	0.5853	229.0	1.96%	655.4	1.91%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.060e+00	0.5853	1026.0	8.78%	2980.7	8.67%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-1.025e+00	0.6048	893.0	7.64%	2594.4	7.55%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.021e+00	0.6059	844.0	7.22%	2451.8	7.13%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.007e+00	0.6138	17.0	0.15%	45.7	0.13%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.005e+00	0.6138	392.0	3.35%	1132.3	3.29%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.003e+00	0.6140	23.0	0.20%	62.3	0.18%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-9.939e-01	0.6185	77.0	0.66%	217.5	0.63%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.866e-01	0.6220	566.0	4.84%	1641.2	4.78%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-9.751e-01	0.6282	139.0	1.19%	397.0	1.16%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-9.672e-01	0.6321	2518.0	21.54%	7362.2	21.42%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-9.626e-01	0.6340	1300.0	11.12%	3791.6	11.03%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-9.495e-01	0.6413	78.0	0.67%	221.5	0.64%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-9.491e-01	0.6413	5.0	0.04%	12.1	0.04%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.491e-01	0.6413	5.0	0.04%	12.4	0.04%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-9.478e-01	0.6413	215.0	1.84%	619.9	1.80%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-9.433e-01	0.6413	373.0	3.19%	1080.7	3.14%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-9.302e-01	0.6484	2.0	0.02%	4.5	0.01%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-9.265e-01	0.6498	310.0	2.65%	897.0	2.61%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-9.183e-01	0.6541	254.0	2.17%	734.9	2.14%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.148e-01	0.6553	77.0	0.66%	219.7	0.64%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-9.058e-01	0.6601	166.0	1.42%	478.6	1.39%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-8.562e-01	0.6926	1619.0	13.85%	4738.4	13.79%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-8.519e-01	0.6945	460.0	3.93%	1340.4	3.90%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-8.518e-01	0.6945	474.0	4.05%	1381.1	4.02%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-8.211e-01	0.7138	390.0	3.34%	1137.9	3.31%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.166e-01	0.7159	4.0	0.03%	10.3	0.03%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-8.035e-01	0.7242	479.0	4.10%	1399.7	4.07%
Tal1	CATCTG	1e0	-7.985e-01	0.7255	382.0	3.27%	1115.8	3.25%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-7.985e-01	0.7255	382.0	3.27%	1115.0	3.24%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-7.884e-01	0.7317	510.0	4.36%	1491.3	4.34%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.783e-01	0.7380	169.0	1.45%	492.8	1.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.702e-01	0.7428	27.0	0.23%	77.2	0.22%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.695e-01	0.7428	16.0	0.14%	45.5	0.13%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-7.679e-01	0.7428	133.0	1.14%	387.7	1.13%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.563e-01	0.7496	30.0	0.26%	86.4	0.25%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-7.491e-01	0.7538	919.0	7.86%	2695.1	7.84%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.412e-01	0.7585	270.0	2.31%	790.8	2.30%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.344e-01	0.7625	108.0	0.92%	316.0	0.92%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.294e-01	0.7651	66.0	0.56%	192.0	0.56%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-7.172e-01	0.7733	1136.0	9.72%	3336.4	9.71%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.870e-01	0.7958	138.0	1.18%	405.9	1.18%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.793e-01	0.8007	161.0	1.38%	473.3	1.38%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-6.785e-01	0.8007	316.0	2.70%	929.7	2.70%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.646e-01	0.8100	4.0	0.03%	11.1	0.03%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.594e-01	0.8129	461.0	3.94%	1357.4	3.95%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.579e-01	0.8129	49.0	0.42%	144.7	0.42%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-6.499e-01	0.8181	8.0	0.07%	23.3	0.07%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.288e-01	0.8343	150.0	1.28%	443.2	1.29%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.143e-01	0.8451	54.0	0.46%	160.2	0.47%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-5.985e-01	0.8573	38.0	0.33%	113.2	0.33%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.919e-01	0.8616	73.0	0.62%	217.1	0.63%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.699e-01	0.8794	592.0	5.06%	1751.1	5.09%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-5.680e-01	0.8797	11.0	0.09%	33.3	0.10%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-5.662e-01	0.8800	794.0	6.79%	2347.3	6.83%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.540e-01	0.8894	195.0	1.67%	580.7	1.69%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-5.417e-01	0.8990	214.0	1.83%	637.5	1.85%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-5.388e-01	0.9002	1168.0	9.99%	3453.4	10.05%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.237e-01	0.9125	37.0	0.32%	112.1	0.33%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-5.215e-01	0.9132	299.0	2.56%	890.3	2.59%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-5.120e-01	0.9205	240.0	2.05%	716.3	2.08%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.890e-01	0.9404	38.0	0.33%	116.4	0.34%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.852e-01	0.9426	30.0	0.26%	92.6	0.27%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.750e-01	0.9508	196.0	1.68%	588.7	1.71%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-4.747e-01	0.9508	734.0	6.28%	2181.6	6.35%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-4.699e-01	0.9527	332.0	2.84%	992.1	2.89%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-4.650e-01	0.9560	552.0	4.72%	1644.5	4.78%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.621e-01	0.9573	79.0	0.68%	240.9	0.70%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-4.600e-01	0.9579	954.0	8.16%	2833.2	8.24%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-4.596e-01	0.9579	198.0	1.69%	595.0	1.73%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-4.416e-01	0.9728	210.0	1.80%	632.2	1.84%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-4.385e-01	0.9743	63.0	0.54%	193.3	0.56%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-4.383e-01	0.9743	104.0	0.89%	316.3	0.92%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-4.224e-01	0.9872	272.0	2.33%	818.9	2.38%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.207e-01	0.9873	34.0	0.29%	107.0	0.31%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-4.198e-01	0.9873	94.0	0.80%	287.9	0.84%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-4.142e-01	0.9908	150.0	1.28%	455.0	1.32%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-3.962e-01	1.0000	1319.0	11.28%	3922.7	11.41%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-3.866e-01	1.0000	19.0	0.16%	61.6	0.18%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-3.831e-01	1.0000	955.0	8.17%	2848.2	8.29%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-3.766e-01	1.0000	636.0	5.44%	1904.3	5.54%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-3.757e-01	1.0000	72.0	0.62%	223.4	0.65%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-3.748e-01	1.0000	2.0	0.02%	7.0	0.02%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-3.716e-01	1.0000	40.0	0.34%	126.9	0.37%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.626e-01	1.0000	14.0	0.12%	47.0	0.14%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.612e-01	1.0000	22.0	0.19%	71.3	0.21%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-3.599e-01	1.0000	902.0	7.72%	2695.2	7.84%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.442e-01	1.0000	691.0	5.91%	2072.9	6.03%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.432e-01	1.0000	301.0	2.57%	912.1	2.65%
 Ik-1	NHTTGGGAATRCC	1e0	-3.401e-01	1.0000	11690.0	100.00%	34369.1	100.00%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-3.366e-01	1.0000	71.0	0.61%	223.0	0.65%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.304e-01	1.0000	239.0	2.04%	728.0	2.12%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-3.263e-01	1.0000	3.0	0.03%	11.8	0.03%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.200e-01	1.0000	20.0	0.17%	66.8	0.19%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.200e-01	1.0000	39.0	0.33%	125.2	0.36%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-3.132e-01	1.0000	792.0	6.78%	2377.5	6.92%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-3.095e-01	1.0000	362.0	3.10%	1098.5	3.20%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.094e-01	1.0000	8.0	0.07%	28.6	0.08%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.072e-01	1.0000	59.0	0.50%	187.1	0.54%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-3.046e-01	1.0000	510.0	4.36%	1540.4	4.48%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-2.991e-01	1.0000	632.0	5.41%	1904.1	5.54%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.980e-01	1.0000	22.0	0.19%	73.7	0.21%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-2.968e-01	1.0000	647.0	5.53%	1949.5	5.67%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.964e-01	1.0000	1.0	0.01%	4.8	0.01%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.927e-01	1.0000	37.0	0.32%	120.7	0.35%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.864e-01	1.0000	1246.0	10.66%	3729.5	10.85%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.835e-01	1.0000	89.0	0.76%	280.1	0.81%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.831e-01	1.0000	114.0	0.98%	356.6	1.04%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.824e-01	1.0000	241.0	2.06%	739.6	2.15%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.808e-01	1.0000	2.0	0.02%	8.6	0.03%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-2.803e-01	1.0000	900.0	7.70%	2704.1	7.87%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.700e-01	1.0000	90.0	0.77%	284.2	0.83%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.699e-01	1.0000	12.0	0.10%	42.7	0.12%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.671e-01	1.0000	86.0	0.74%	272.6	0.79%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.577e-01	1.0000	32.0	0.27%	106.1	0.31%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.575e-01	1.0000	179.0	1.53%	555.5	1.62%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.497e-01	1.0000	99.0	0.85%	313.3	0.91%
SeqBias: CA-repeat	CACACACACA	1e0	-2.495e-01	1.0000	3403.0	29.11%	10115.6	29.43%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.484e-01	1.0000	29.0	0.25%	97.7	0.28%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.456e-01	1.0000	472.0	4.04%	1436.7	4.18%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.373e-01	1.0000	956.0	8.18%	2880.8	8.38%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.345e-01	1.0000	555.0	4.75%	1686.9	4.91%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-2.293e-01	1.0000	19.0	0.16%	66.9	0.19%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.248e-01	1.0000	381.0	3.26%	1167.3	3.40%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.176e-01	1.0000	17.0	0.15%	60.2	0.18%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.173e-01	1.0000	32.0	0.27%	108.5	0.32%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.173e-01	1.0000	32.0	0.27%	108.8	0.32%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-2.167e-01	1.0000	10.0	0.09%	37.6	0.11%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-2.048e-01	1.0000	322.0	2.75%	993.1	2.89%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e0	-2.000e-01	1.0000	224.0	1.92%	698.1	2.03%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.982e-01	1.0000	139.0	1.19%	440.5	1.28%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.965e-01	1.0000	402.0	3.44%	1235.3	3.59%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.890e-01	1.0000	13.0	0.11%	48.9	0.14%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.822e-01	1.0000	32.0	0.27%	110.0	0.32%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.822e-01	1.0000	1384.0	11.84%	4168.8	12.13%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.805e-01	1.0000	12.0	0.10%	45.2	0.13%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-1.770e-01	1.0000	166.0	1.42%	525.7	1.53%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.740e-01	1.0000	201.0	1.72%	632.6	1.84%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.736e-01	1.0000	509.0	4.35%	1561.8	4.54%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.732e-01	1.0000	864.0	7.39%	2623.3	7.63%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.722e-01	1.0000	52.0	0.44%	174.2	0.51%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.705e-01	1.0000	189.0	1.62%	596.2	1.73%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-1.653e-01	1.0000	155.0	1.33%	493.4	1.44%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.647e-01	1.0000	99.0	0.85%	321.8	0.94%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-1.562e-01	1.0000	797.0	6.82%	2428.4	7.07%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.555e-01	1.0000	960.0	8.21%	2915.3	8.48%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.549e-01	1.0000	438.0	3.75%	1352.6	3.94%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.507e-01	1.0000	935.0	8.00%	2842.6	8.27%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.447e-01	1.0000	406.0	3.47%	1258.9	3.66%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.408e-01	1.0000	91.0	0.78%	299.1	0.87%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.400e-01	1.0000	1351.0	11.56%	4086.2	11.89%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.383e-01	1.0000	8.0	0.07%	33.6	0.10%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.382e-01	1.0000	107.0	0.92%	349.5	1.02%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-1.298e-01	1.0000	1278.0	10.93%	3873.9	11.27%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.269e-01	1.0000	623.0	5.33%	1916.5	5.58%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.236e-01	1.0000	3.0	0.03%	15.7	0.05%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.234e-01	1.0000	162.0	1.39%	521.4	1.52%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.210e-01	1.0000	787.0	6.73%	2411.0	7.01%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.204e-01	1.0000	357.0	3.05%	1116.8	3.25%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.171e-01	1.0000	116.0	0.99%	380.3	1.11%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.145e-01	1.0000	408.0	3.49%	1272.9	3.70%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.135e-01	1.0000	152.0	1.30%	492.5	1.43%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.105e-01	1.0000	18.0	0.15%	69.9	0.20%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.079e-01	1.0000	855.0	7.31%	2619.2	7.62%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.064e-01	1.0000	393.0	3.36%	1229.9	3.58%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.035e-01	1.0000	132.0	1.13%	432.6	1.26%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.014e-01	1.0000	10.0	0.09%	42.4	0.12%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.688e-02	1.0000	54.0	0.46%	188.7	0.55%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-9.670e-02	1.0000	851.0	7.28%	2612.6	7.60%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-8.642e-02	1.0000	10.0	0.09%	43.6	0.13%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.496e-02	1.0000	51.0	0.44%	180.5	0.53%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.231e-02	1.0000	113.0	0.97%	377.1	1.10%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-7.948e-02	1.0000	10811.0	92.48%	31901.6	92.82%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-7.889e-02	1.0000	284.0	2.43%	906.6	2.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.840e-02	1.0000	100.0	0.86%	337.3	0.98%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.757e-02	1.0000	29.0	0.25%	109.1	0.32%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.503e-02	1.0000	510.0	4.36%	1595.1	4.64%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-7.495e-02	1.0000	210.0	1.80%	680.9	1.98%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-7.325e-02	1.0000	554.0	4.74%	1729.7	5.03%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-7.295e-02	1.0000	641.0	5.48%	1992.4	5.80%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-7.280e-02	1.0000	1181.0	10.10%	3614.9	10.52%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.632e-02	1.0000	982.0	8.40%	3023.0	8.80%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-6.271e-02	1.0000	285.0	2.44%	915.8	2.66%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-6.194e-02	1.0000	218.0	1.86%	709.3	2.06%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.013e-02	1.0000	28.0	0.24%	108.4	0.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.955e-02	1.0000	58.0	0.50%	207.1	0.60%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-5.698e-02	1.0000	209.0	1.79%	683.8	1.99%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.529e-02	1.0000	86.0	0.74%	298.5	0.87%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.307e-02	1.0000	83.0	0.71%	289.5	0.84%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-5.026e-02	1.0000	5.0	0.04%	27.7	0.08%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-4.793e-02	1.0000	707.0	6.05%	2207.8	6.42%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-4.613e-02	1.0000	359.0	3.07%	1150.2	3.35%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.485e-02	1.0000	166.0	1.42%	554.6	1.61%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-4.275e-02	1.0000	406.0	3.47%	1296.5	3.77%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.186e-02	1.0000	365.0	3.12%	1171.9	3.41%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.167e-02	1.0000	50.0	0.43%	185.3	0.54%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-4.133e-02	1.0000	375.0	3.21%	1203.0	3.50%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-4.109e-02	1.0000	85.0	0.73%	299.7	0.87%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.088e-02	1.0000	200.0	1.71%	662.1	1.93%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.041e-02	1.0000	5.0	0.04%	28.7	0.08%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-3.920e-02	1.0000	22.0	0.19%	91.5	0.27%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-3.845e-02	1.0000	391.0	3.34%	1253.4	3.65%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-3.832e-02	1.0000	333.0	2.85%	1075.5	3.13%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-3.814e-02	1.0000	68.0	0.58%	245.3	0.71%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.786e-02	1.0000	120.0	1.03%	413.0	1.20%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.735e-02	1.0000	75.0	0.64%	268.8	0.78%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-3.452e-02	1.0000	474.0	4.05%	1510.0	4.39%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-3.405e-02	1.0000	111.0	0.95%	385.6	1.12%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-3.342e-02	1.0000	380.0	3.25%	1223.5	3.56%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.285e-02	1.0000	182.0	1.56%	610.8	1.78%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-3.242e-02	1.0000	228.0	1.95%	754.6	2.20%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-3.237e-02	1.0000	296.0	2.53%	965.8	2.81%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.208e-02	1.0000	729.0	6.24%	2288.2	6.66%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-3.138e-02	1.0000	299.0	2.56%	975.6	2.84%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-3.129e-02	1.0000	733.0	6.27%	2301.4	6.70%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.089e-02	1.0000	17.0	0.15%	75.4	0.22%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.089e-02	1.0000	17.0	0.15%	75.4	0.22%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.051e-02	1.0000	891.0	7.62%	2780.5	8.09%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-2.906e-02	1.0000	1840.0	15.74%	5631.6	16.39%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-2.888e-02	1.0000	34.0	0.29%	135.1	0.39%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.841e-02	1.0000	23.0	0.20%	97.3	0.28%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.827e-02	1.0000	2.0	0.02%	16.9	0.05%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.816e-02	1.0000	246.0	2.10%	813.7	2.37%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-2.706e-02	1.0000	2402.0	20.55%	7311.8	21.27%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.666e-02	1.0000	212.0	1.81%	708.8	2.06%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.658e-02	1.0000	927.0	7.93%	2894.5	8.42%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-2.621e-02	1.0000	174.0	1.49%	589.6	1.72%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.483e-02	1.0000	438.0	3.75%	1409.1	4.10%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-2.360e-02	1.0000	406.0	3.47%	1312.4	3.82%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.267e-02	1.0000	929.0	7.95%	2906.8	8.46%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-2.258e-02	1.0000	152.0	1.30%	522.2	1.52%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-2.219e-02	1.0000	208.0	1.78%	699.4	2.04%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.955e-02	1.0000	552.0	4.72%	1765.2	5.14%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.937e-02	1.0000	211.0	1.80%	712.0	2.07%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-1.931e-02	1.0000	637.0	5.45%	2025.0	5.89%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.701e-02	1.0000	83.0	0.71%	304.2	0.89%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.700e-02	1.0000	259.0	2.22%	864.6	2.52%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.649e-02	1.0000	383.0	3.28%	1250.9	3.64%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.631e-02	1.0000	43.0	0.37%	171.5	0.50%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.589e-02	1.0000	3.0	0.03%	23.0	0.07%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.573e-02	1.0000	2.0	0.02%	18.8	0.05%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.551e-02	1.0000	268.0	2.29%	894.7	2.60%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.545e-02	1.0000	66.0	0.56%	249.4	0.73%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.545e-02	1.0000	66.0	0.56%	249.6	0.73%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-1.530e-02	1.0000	955.0	8.17%	2999.7	8.73%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.529e-02	1.0000	161.0	1.38%	557.7	1.62%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.527e-02	1.0000	9.0	0.08%	49.3	0.14%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.512e-02	1.0000	1498.0	12.81%	4637.7	13.49%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.460e-02	1.0000	316.0	2.70%	1045.2	3.04%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.460e-02	1.0000	157.0	1.34%	545.3	1.59%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.458e-02	1.0000	17.0	0.15%	80.1	0.23%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.441e-02	1.0000	1022.0	8.74%	3204.4	9.32%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.414e-02	1.0000	356.0	3.05%	1170.5	3.41%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.400e-02	1.0000	231.0	1.98%	780.1	2.27%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.399e-02	1.0000	21.0	0.18%	96.0	0.28%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.280e-02	1.0000	128.0	1.09%	454.1	1.32%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.222e-02	1.0000	382.0	3.27%	1255.0	3.65%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.200e-02	1.0000	398.0	3.40%	1304.4	3.80%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.134e-02	1.0000	729.0	6.24%	2322.7	6.76%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.126e-02	1.0000	519.0	4.44%	1679.8	4.89%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.090e-02	1.0000	290.0	2.48%	970.4	2.82%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.058e-02	1.0000	766.0	6.55%	2437.1	7.09%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.036e-02	1.0000	215.0	1.84%	735.6	2.14%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.026e-02	1.0000	320.0	2.74%	1065.1	3.10%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.021e-02	1.0000	453.0	3.88%	1478.8	4.30%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.252e-03	1.0000	76.0	0.65%	288.2	0.84%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-8.957e-03	1.0000	72.0	0.62%	276.0	0.80%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-8.014e-03	1.0000	950.0	8.13%	3006.1	8.75%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-7.624e-03	1.0000	1012.0	8.66%	3196.5	9.30%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-7.585e-03	1.0000	431.0	3.69%	1417.7	4.12%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-7.427e-03	1.0000	222.0	1.90%	763.4	2.22%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-6.700e-03	1.0000	672.0	5.75%	2163.2	6.29%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-6.663e-03	1.0000	86.0	0.74%	325.7	0.95%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-6.429e-03	1.0000	354.0	3.03%	1181.8	3.44%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.101e-03	1.0000	86.0	0.74%	326.4	0.95%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.836e-03	1.0000	10.0	0.09%	58.6	0.17%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-5.539e-03	1.0000	316.0	2.70%	1065.8	3.10%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-5.402e-03	1.0000	184.0	1.57%	648.0	1.89%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.294e-03	1.0000	575.0	4.92%	1871.0	5.44%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.086e-03	1.0000	175.0	1.50%	619.3	1.80%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-4.882e-03	1.0000	890.0	7.61%	2839.5	8.26%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.607e-03	1.0000	1047.0	8.96%	3319.4	9.66%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-4.207e-03	1.0000	167.0	1.43%	596.6	1.74%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-4.081e-03	1.0000	940.0	8.04%	2997.6	8.72%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.704e-03	1.0000	45.0	0.38%	191.6	0.56%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-3.606e-03	1.0000	124.0	1.06%	458.7	1.33%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-3.584e-03	1.0000	92.0	0.79%	352.4	1.03%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-3.335e-03	1.0000	263.0	2.25%	907.3	2.64%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-2.502e-03	1.0000	551.0	4.71%	1815.9	5.28%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.396e-03	1.0000	15.0	0.13%	84.0	0.24%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-2.163e-03	1.0000	1139.0	9.74%	3623.9	10.54%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-2.014e-03	1.0000	665.0	5.69%	2173.2	6.32%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.975e-03	1.0000	43.0	0.37%	190.0	0.55%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.920e-03	1.0000	361.0	3.09%	1227.9	3.57%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.831e-03	1.0000	1429.0	12.22%	4509.7	13.12%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.812e-03	1.0000	164.0	1.40%	598.9	1.74%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-1.753e-03	1.0000	2741.0	23.45%	8455.3	24.60%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.693e-03	1.0000	958.0	8.20%	3078.2	8.96%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.685e-03	1.0000	236.0	2.02%	832.1	2.42%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-1.513e-03	1.0000	358.0	3.06%	1222.2	3.56%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.505e-03	1.0000	1223.0	10.46%	3890.9	11.32%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.185e-03	1.0000	169.0	1.45%	620.8	1.81%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.048e-03	1.0000	688.0	5.89%	2260.5	6.58%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-9.720e-04	1.0000	1404.0	12.01%	4454.4	12.96%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-9.390e-04	1.0000	713.0	6.10%	2340.1	6.81%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-8.730e-04	1.0000	581.0	4.97%	1932.5	5.62%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-7.100e-04	1.0000	865.0	7.40%	2816.8	8.20%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.540e-04	1.0000	52.0	0.44%	230.7	0.67%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-6.360e-04	1.0000	312.0	2.67%	1091.7	3.18%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-5.900e-04	1.0000	316.0	2.70%	1105.1	3.22%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.180e-04	1.0000	621.0	5.31%	2068.2	6.02%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-5.000e-04	1.0000	98.0	0.84%	394.0	1.15%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.970e-04	1.0000	162.0	1.39%	608.7	1.77%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.380e-04	1.0000	142.0	1.21%	543.6	1.58%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-4.240e-04	1.0000	138.0	1.18%	530.7	1.54%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-3.530e-04	1.0000	466.0	3.99%	1590.0	4.63%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-3.290e-04	1.0000	100.0	0.86%	404.1	1.18%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-3.200e-04	1.0000	45.0	0.38%	210.8	0.61%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.500e-04	1.0000	200.0	1.71%	742.8	2.16%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.410e-04	1.0000	7.0	0.06%	59.8	0.17%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.080e-04	1.0000	300.0	2.57%	1070.6	3.12%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.910e-04	1.0000	176.0	1.51%	666.4	1.94%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.590e-04	1.0000	191.0	1.63%	718.2	2.09%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.360e-04	1.0000	117.0	1.00%	471.8	1.37%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.280e-04	1.0000	606.0	5.18%	2050.4	5.97%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-1.230e-04	1.0000	1014.0	8.67%	3319.4	9.66%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-1.200e-04	1.0000	679.0	5.81%	2280.9	6.64%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-9.600e-05	1.0000	430.0	3.68%	1499.8	4.36%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-9.300e-05	1.0000	427.0	3.65%	1490.3	4.34%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-8.500e-05	1.0000	42.0	0.36%	208.5	0.61%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-8.500e-05	1.0000	120.0	1.03%	486.9	1.42%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-7.900e-05	1.0000	303.0	2.59%	1094.3	3.18%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-7.300e-05	1.0000	108.0	0.92%	446.8	1.30%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.200e-05	1.0000	310.0	2.65%	1118.8	3.26%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.400e-05	1.0000	95.0	0.81%	402.1	1.17%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-6.300e-05	1.0000	222.0	1.90%	833.0	2.42%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-6.200e-05	1.0000	566.0	4.84%	1938.6	5.64%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.900e-05	1.0000	86.0	0.74%	371.7	1.08%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-5.700e-05	1.0000	193.0	1.65%	737.7	2.15%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.500e-05	1.0000	399.0	3.41%	1412.9	4.11%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-4.300e-05	1.0000	420.0	3.59%	1480.7	4.31%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.200e-05	1.0000	125.0	1.07%	510.0	1.48%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-3.600e-05	1.0000	952.0	8.14%	3156.0	9.18%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-3.200e-05	1.0000	119.0	1.02%	492.7	1.43%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-3.000e-05	1.0000	772.0	6.60%	2599.8	7.56%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.000e-05	1.0000	4.0	0.03%	51.9	0.15%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-2.900e-05	1.0000	149.0	1.27%	596.2	1.73%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.900e-05	1.0000	56.0	0.48%	268.3	0.78%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-2.800e-05	1.0000	661.0	5.65%	2252.2	6.55%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-2.700e-05	1.0000	133.0	1.14%	542.7	1.58%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-2.000e-05	1.0000	413.0	3.53%	1470.5	4.28%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.900e-05	1.0000	1041.0	8.91%	3447.0	10.03%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.600e-05	1.0000	524.0	4.48%	1829.0	5.32%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.500e-05	1.0000	477.0	4.08%	1680.3	4.89%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.400e-05	1.0000	327.0	2.80%	1196.2	3.48%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.400e-05	1.0000	286.0	2.45%	1062.0	3.09%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.300e-05	1.0000	340.0	2.91%	1240.9	3.61%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.200e-05	1.0000	670.0	5.73%	2297.8	6.69%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.000e-05	1.0000	286.0	2.45%	1066.0	3.10%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-9.000e-06	1.0000	176.0	1.51%	701.0	2.04%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.000e-06	1.0000	145.0	1.24%	594.2	1.73%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.000e-06	1.0000	431.0	3.69%	1541.8	4.49%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-8.000e-06	1.0000	201.0	1.72%	786.1	2.29%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.000e-06	1.0000	280.0	2.40%	1052.8	3.06%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-4.000e-06	1.0000	431.0	3.69%	1553.5	4.52%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.000e-06	1.0000	305.0	2.61%	1146.2	3.33%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-2.000e-06	1.0000	32.0	0.27%	190.6	0.55%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.000e-06	1.0000	93.0	0.80%	423.7	1.23%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.000e-06	1.0000	235.0	2.01%	920.8	2.68%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-1.000e-06	1.0000	769.0	6.58%	2649.9	7.71%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.000e-06	1.0000	287.0	2.46%	1096.9	3.19%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.000e-06	1.0000	339.0	2.90%	1273.0	3.70%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-0.000e+00	1.0000	624.0	5.34%	2209.0	6.43%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-0.000e+00	1.0000	19.0	0.16%	144.2	0.42%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-0.000e+00	1.0000	445.0	3.81%	1633.3	4.75%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-0.000e+00	1.0000	299.0	2.56%	1159.5	3.37%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-0.000e+00	1.0000	384.0	3.28%	1447.7	4.21%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	1066.0	9.12%	3637.0	10.58%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-0.000e+00	1.0000	383.0	3.28%	1449.2	4.22%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-0.000e+00	1.0000	506.0	4.33%	1857.1	5.40%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-0.000e+00	1.0000	445.0	3.81%	1664.3	4.84%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-0.000e+00	1.0000	1269.0	10.86%	4304.0	12.52%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-0.000e+00	1.0000	1073.0	9.18%	3712.0	10.80%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	368.0	3.15%	1444.2	4.20%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-0.000e+00	1.0000	90.0	0.77%	467.5	1.36%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-0.000e+00	1.0000	72.0	0.62%	398.2	1.16%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-0.000e+00	1.0000	106.0	0.91%	530.5	1.54%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-0.000e+00	1.0000	523.0	4.47%	1990.1	5.79%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-0.000e+00	1.0000	137.0	1.17%	664.4	1.93%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-0.000e+00	1.0000	136.0	1.16%	670.9	1.95%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-0.000e+00	1.0000	281.0	2.40%	1200.8	3.49%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-0.000e+00	1.0000	203.0	1.74%	927.0	2.70%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-0.000e+00	1.0000	124.0	1.06%	639.4	1.86%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-0.000e+00	1.0000	590.0	5.05%	2266.6	6.59%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-0.000e+00	1.0000	139.0	1.19%	700.4	2.04%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-0.000e+00	1.0000	527.0	4.51%	2113.3	6.15%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-0.000e+00	1.0000	34.0	0.29%	301.7	0.88%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-0.000e+00	1.0000	116.0	0.99%	660.8	1.92%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-0.000e+00	1.0000	165.0	1.41%	854.2	2.49%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-0.000e+00	1.0000	524.0	4.48%	2132.4	6.20%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	1.5	0.00%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	27.8	0.08%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	4.2	0.01%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.7	0.01%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	0.000e+00	1.0000	70.0	0.60%	693.5	2.02%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	0.000e+00	1.0000	734.0	6.28%	3422.8	9.96%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	0.000e+00	1.0000	204.0	1.75%	1018.2	2.96%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.00%