Information for 6-TAAAATAG (Motif 10)

A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
Reverse Opposite:
A G T C A G C T T G C A A G C T A G C T C G A T A C G T C G T A
p-value:1e-7
log p-value:-1.622e+01
Information Content per bp:1.653
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif20.81%
Number of Background Sequences with motif3457.5
Percentage of Background Sequences with motif7.96%
Average Position of motif in Targets50.5 +/- 27.2bp
Average Position of motif in Background51.3 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

croc/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TAAAATAG
ATAAAA---
 A C G T A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
C T G A A C G T C G T A C G T A G T C A C G T A A C G T A C G T A C G T

KHDRBS1(KH)/Mus_musculus-RNCMPT00062-PBM/HughesRNA

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TAAAATAG
TAAAAGG-
 A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
A C G T C G T A C G T A C G T A C G T A T A C G T A C G A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TAAAATAG
CCAAAAATAG
 A C G T A C G T A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

br(var.2)/MA0011.1/Jaspar

Match Rank:4
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TAAAATAG--
--AAATAGTA
 A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G A C G T A C G T
A C G T A C G T C T G A G C T A G T C A A C G T C T G A C T A G C G A T C G T A

ROX8(RRM)/Drosophila_melanogaster-RNCMPT00148-PBM/HughesRNA

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TAAAATAG
-AAAATGG
 A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
A C G T C G T A C G T A C G T A C T G A C G A T C T A G A C T G

KHDRBS1(KH)/Homo_sapiens-RNCMPT00169-PBM/HughesRNA

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TAAAATAG
ATAAAAG--
 A C G T A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
C G T A A C G T C G T A C G T A C G T A C G T A T C A G A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TAAAATAG
CYHATAAAAN--
 A C G T A C G T A C G T A C G T A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T

gt/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TAAAATAG
TAAAAA--
 A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
A C G T C G T A C G T A C G T A T C G A C G T A A C G T A C G T

SHEP(RRM)/Drosophila_melanogaster-RNCMPT00174-PBM/HughesRNA

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TAAAATAG
TAATATA-
 A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
G A C T C G T A C G T A G C A T C G T A C G A T C G T A A C G T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----TAAAATAG
VGCCATAAAA---
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C T A C T G A T C G A A C G T T C G A T C A G
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T A C G T A C G T