Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 11692)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 34314)	% of Background Sequences with Motif
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-836	-1.926e+03	0.0000	1997.0	17.08%	1050.0	3.06%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-413	-9.519e+02	0.0000	1533.0	13.11%	1213.0	3.53%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-376	-8.672e+02	0.0000	1734.0	14.83%	1627.9	4.74%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-353	-8.145e+02	0.0000	1417.0	12.12%	1188.8	3.46%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-353	-8.140e+02	0.0000	1298.0	11.10%	1011.7	2.95%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-346	-7.971e+02	0.0000	1406.0	12.03%	1191.4	3.47%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-345	-7.953e+02	0.0000	1082.0	9.26%	728.7	2.12%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-341	-7.868e+02	0.0000	1363.0	11.66%	1137.9	3.32%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-339	-7.818e+02	0.0000	1273.0	10.89%	1008.7	2.94%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-336	-7.757e+02	0.0000	1331.0	11.39%	1101.5	3.21%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-332	-7.668e+02	0.0000	1518.0	12.99%	1405.8	4.10%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-328	-7.560e+02	0.0000	1102.0	9.43%	790.4	2.30%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-324	-7.481e+02	0.0000	1347.0	11.52%	1157.4	3.37%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-323	-7.458e+02	0.0000	1209.0	10.34%	952.1	2.77%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-322	-7.419e+02	0.0000	1298.0	11.10%	1089.0	3.17%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e-311	-7.170e+02	0.0000	1035.0	8.85%	734.4	2.14%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-309	-7.136e+02	0.0000	1208.0	10.33%	985.5	2.87%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-308	-7.100e+02	0.0000	1125.0	9.62%	867.9	2.53%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e-304	-7.014e+02	0.0000	1015.0	8.68%	721.1	2.10%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-295	-6.813e+02	0.0000	2013.0	17.22%	2418.4	7.05%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-295	-6.810e+02	0.0000	1235.0	10.56%	1063.5	3.10%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-293	-6.758e+02	0.0000	1274.0	10.90%	1130.0	3.29%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-292	-6.736e+02	0.0000	2091.0	17.89%	2583.5	7.53%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-278	-6.406e+02	0.0000	1180.0	10.09%	1026.4	2.99%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-271	-6.243e+02	0.0000	1513.0	12.94%	1600.3	4.66%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-265	-6.103e+02	0.0000	1523.0	13.03%	1640.4	4.78%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-259	-5.977e+02	0.0000	1580.0	13.52%	1763.3	5.14%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-244	-5.628e+02	0.0000	1669.0	14.28%	1990.3	5.80%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-239	-5.516e+02	0.0000	943.0	8.07%	769.8	2.24%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-231	-5.339e+02	0.0000	2141.0	18.31%	2990.0	8.71%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-216	-4.989e+02	0.0000	924.0	7.90%	801.6	2.34%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-205	-4.731e+02	0.0000	759.0	6.49%	585.2	1.71%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-204	-4.718e+02	0.0000	2183.0	18.67%	3237.1	9.43%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-204	-4.712e+02	0.0000	2120.0	18.14%	3104.9	9.05%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-201	-4.632e+02	0.0000	678.0	5.80%	482.7	1.41%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-197	-4.538e+02	0.0000	635.0	5.43%	434.0	1.26%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-191	-4.404e+02	0.0000	564.0	4.82%	353.7	1.03%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-186	-4.303e+02	0.0000	1346.0	11.51%	1637.2	4.77%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-186	-4.290e+02	0.0000	724.0	6.19%	581.5	1.69%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e-183	-4.215e+02	0.0000	611.0	5.23%	430.9	1.26%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-168	-3.878e+02	0.0000	1417.0	12.12%	1864.2	5.43%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-160	-3.696e+02	0.0000	656.0	5.61%	547.3	1.59%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-159	-3.676e+02	0.0000	1043.0	8.92%	1195.3	3.48%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-137	-3.159e+02	0.0000	1364.0	11.67%	1931.0	5.63%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-129	-2.982e+02	0.0000	620.0	5.30%	580.0	1.69%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-124	-2.856e+02	0.0000	416.0	3.56%	293.3	0.85%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-120	-2.765e+02	0.0000	448.0	3.83%	346.2	1.01%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-119	-2.743e+02	0.0000	310.0	2.65%	171.0	0.50%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-112	-2.601e+02	0.0000	305.0	2.61%	174.0	0.51%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e-102	-2.364e+02	0.0000	484.0	4.14%	447.8	1.30%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-100	-2.322e+02	0.0000	424.0	3.63%	360.6	1.05%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-96	-2.220e+02	0.0000	367.0	3.14%	288.9	0.84%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-94	-2.180e+02	0.0000	843.0	7.21%	1126.0	3.28%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-84	-1.948e+02	0.0000	2153.0	18.42%	4163.5	12.13%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-83	-1.931e+02	0.0000	343.0	2.93%	285.7	0.83%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-83	-1.928e+02	0.0000	753.0	6.44%	1008.0	2.94%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-80	-1.862e+02	0.0000	306.0	2.62%	239.4	0.70%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-77	-1.790e+02	0.0000	248.0	2.12%	167.2	0.49%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-75	-1.730e+02	0.0000	444.0	3.80%	475.5	1.39%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-69	-1.596e+02	0.0000	283.0	2.42%	235.0	0.68%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-67	-1.564e+02	0.0000	234.0	2.00%	169.4	0.49%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-66	-1.535e+02	0.0000	229.0	1.96%	165.1	0.48%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-66	-1.522e+02	0.0000	1471.0	12.58%	2724.6	7.94%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-64	-1.479e+02	0.0000	732.0	6.26%	1083.7	3.16%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-64	-1.478e+02	0.0000	3229.0	27.62%	7208.1	21.00%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e-62	-1.444e+02	0.0000	234.0	2.00%	181.7	0.53%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-60	-1.388e+02	0.0000	478.0	4.09%	601.5	1.75%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-57	-1.327e+02	0.0000	1075.0	9.20%	1887.3	5.50%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-51	-1.185e+02	0.0000	901.0	7.71%	1549.6	4.52%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-50	-1.170e+02	0.0000	386.0	3.30%	476.0	1.39%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-49	-1.138e+02	0.0000	602.0	5.15%	913.9	2.66%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-47	-1.101e+02	0.0000	786.0	6.72%	1324.1	3.86%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-45	-1.047e+02	0.0000	455.0	3.89%	637.7	1.86%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-43	-1.009e+02	0.0000	2798.0	23.93%	6429.1	18.73%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-41	-9.538e+01	0.0000	809.0	6.92%	1435.9	4.18%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-39	-9.193e+01	0.0000	248.0	2.12%	274.5	0.80%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-39	-9.100e+01	0.0000	311.0	2.66%	390.5	1.14%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-39	-9.028e+01	0.0000	2022.0	17.30%	4468.6	13.02%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-38	-8.902e+01	0.0000	868.0	7.43%	1600.9	4.66%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-37	-8.679e+01	0.0000	3994.0	34.17%	9839.3	28.67%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e-36	-8.435e+01	0.0000	215.0	1.84%	230.2	0.67%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-36	-8.327e+01	0.0000	167.0	1.43%	153.3	0.45%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-36	-8.304e+01	0.0000	454.0	3.88%	697.7	2.03%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-35	-8.247e+01	0.0000	1328.0	11.36%	2752.4	8.02%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-34	-7.974e+01	0.0000	114.0	0.98%	80.7	0.24%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-34	-7.916e+01	0.0000	610.0	5.22%	1051.2	3.06%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-34	-7.865e+01	0.0000	2670.0	22.84%	6287.2	18.32%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-33	-7.602e+01	0.0000	1128.0	9.65%	2296.1	6.69%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-32	-7.460e+01	0.0000	95.0	0.81%	60.9	0.18%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-31	-7.325e+01	0.0000	545.0	4.66%	929.3	2.71%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-31	-7.275e+01	0.0000	881.0	7.54%	1713.2	4.99%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-31	-7.246e+01	0.0000	371.0	3.17%	556.7	1.62%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-31	-7.212e+01	0.0000	2798.0	23.93%	6699.1	19.52%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-30	-7.034e+01	0.0000	2282.0	19.52%	5325.1	15.52%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-30	-7.000e+01	0.0000	110.0	0.94%	84.7	0.25%
SeqBias: A/T bias	WWWWWWWWWW	1e-30	-6.983e+01	0.0000	10939.0	93.58%	31101.4	90.62%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-29	-6.774e+01	0.0000	1178.0	10.08%	2474.8	7.21%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-28	-6.653e+01	0.0000	1286.0	11.00%	2755.4	8.03%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e-28	-6.633e+01	0.0000	259.0	2.22%	347.8	1.01%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-28	-6.533e+01	0.0000	212.0	1.81%	260.5	0.76%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-26	-6.193e+01	0.0000	1368.0	11.70%	2999.8	8.74%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-26	-6.155e+01	0.0000	147.0	1.26%	152.2	0.44%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-26	-6.104e+01	0.0000	2131.0	18.23%	5012.1	14.60%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-26	-6.006e+01	0.0000	1155.0	9.88%	2470.5	7.20%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-25	-5.885e+01	0.0000	364.0	3.11%	585.9	1.71%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-25	-5.859e+01	0.0000	134.0	1.15%	135.8	0.40%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-25	-5.840e+01	0.0000	888.0	7.60%	1814.6	5.29%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-25	-5.819e+01	0.0000	240.0	2.05%	330.8	0.96%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-25	-5.757e+01	0.0000	1249.0	10.68%	2728.7	7.95%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-24	-5.721e+01	0.0000	447.0	3.82%	775.0	2.26%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-24	-5.642e+01	0.0000	421.0	3.60%	719.3	2.10%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-24	-5.634e+01	0.0000	486.0	4.16%	866.1	2.52%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-24	-5.611e+01	0.0000	813.0	6.95%	1644.3	4.79%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-23	-5.502e+01	0.0000	2763.0	23.64%	6794.7	19.80%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-23	-5.423e+01	0.0000	109.0	0.93%	101.2	0.29%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-23	-5.401e+01	0.0000	1350.0	11.55%	3017.1	8.79%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-23	-5.365e+01	0.0000	243.0	2.08%	348.5	1.02%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-23	-5.350e+01	0.0000	1351.0	11.56%	3024.5	8.81%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-22	-5.184e+01	0.0000	996.0	8.52%	2128.1	6.20%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-22	-5.158e+01	0.0000	773.0	6.61%	1575.0	4.59%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-22	-5.131e+01	0.0000	1490.0	12.75%	3406.2	9.93%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-22	-5.124e+01	0.0000	953.0	8.15%	2024.8	5.90%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e-21	-5.056e+01	0.0000	1411.0	12.07%	3206.0	9.34%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-20	-4.825e+01	0.0000	81.0	0.69%	66.4	0.19%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-20	-4.786e+01	0.0000	2031.0	17.37%	4883.9	14.23%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e-20	-4.759e+01	0.0000	1191.0	10.19%	2660.5	7.75%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-20	-4.725e+01	0.0000	682.0	5.83%	1378.9	4.02%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-20	-4.722e+01	0.0000	1106.0	9.46%	2444.5	7.12%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-20	-4.671e+01	0.0000	348.0	2.98%	595.2	1.73%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-20	-4.671e+01	0.0000	670.0	5.73%	1353.0	3.94%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-20	-4.660e+01	0.0000	275.0	2.35%	436.9	1.27%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-20	-4.644e+01	0.0000	815.0	6.97%	1712.5	4.99%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-20	-4.644e+01	0.0000	831.0	7.11%	1752.7	5.11%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-19	-4.556e+01	0.0000	1837.0	15.71%	4386.7	12.78%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-19	-4.498e+01	0.0000	758.0	6.48%	1580.2	4.60%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-19	-4.463e+01	0.0000	1058.0	9.05%	2342.0	6.82%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-18	-4.352e+01	0.0000	2554.0	21.85%	6365.0	18.55%
SeqBias: TA-repeat	TATATATATA	1e-18	-4.352e+01	0.0000	4105.0	35.12%	10714.3	31.22%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-18	-4.337e+01	0.0000	723.0	6.18%	1504.9	4.39%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-18	-4.302e+01	0.0000	761.0	6.51%	1601.1	4.67%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-18	-4.294e+01	0.0000	975.0	8.34%	2143.8	6.25%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-18	-4.273e+01	0.0000	1920.0	16.42%	4642.1	13.53%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-18	-4.267e+01	0.0000	271.0	2.32%	441.5	1.29%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-18	-4.258e+01	0.0000	1194.0	10.21%	2712.3	7.90%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-18	-4.209e+01	0.0000	1242.0	10.62%	2842.9	8.28%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-18	-4.163e+01	0.0000	972.0	8.31%	2146.4	6.25%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-17	-4.121e+01	0.0000	775.0	6.63%	1649.7	4.81%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-17	-3.966e+01	0.0000	971.0	8.31%	2160.2	6.29%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-17	-3.949e+01	0.0000	376.0	3.22%	690.0	2.01%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-17	-3.928e+01	0.0000	918.0	7.85%	2027.2	5.91%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-17	-3.919e+01	0.0000	990.0	8.47%	2213.4	6.45%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-16	-3.876e+01	0.0000	767.0	6.56%	1647.6	4.80%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-16	-3.828e+01	0.0000	161.0	1.38%	225.6	0.66%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-16	-3.811e+01	0.0000	723.0	6.18%	1541.1	4.49%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-16	-3.808e+01	0.0000	1091.0	9.33%	2485.1	7.24%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-16	-3.797e+01	0.0000	299.0	2.56%	521.2	1.52%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-16	-3.796e+01	0.0000	1898.0	16.24%	4640.5	13.52%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-16	-3.766e+01	0.0000	559.0	4.78%	1137.7	3.32%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-16	-3.748e+01	0.0000	3915.0	33.49%	10273.9	29.94%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-16	-3.698e+01	0.0000	974.0	8.33%	2191.4	6.39%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-15	-3.636e+01	0.0000	880.0	7.53%	1954.3	5.69%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-15	-3.543e+01	0.0000	523.0	4.47%	1063.8	3.10%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-15	-3.460e+01	0.0000	1299.0	11.11%	3068.2	8.94%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e-14	-3.433e+01	0.0000	409.0	3.50%	794.8	2.32%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-14	-3.430e+01	0.0000	3241.0	27.72%	8419.0	24.53%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-14	-3.424e+01	0.0000	9483.0	81.12%	26819.4	78.15%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-14	-3.365e+01	0.0000	114.0	0.98%	145.9	0.43%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-14	-3.284e+01	0.0000	1135.0	9.71%	2652.2	7.73%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-14	-3.280e+01	0.0000	525.0	4.49%	1085.2	3.16%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-14	-3.262e+01	0.0000	65.0	0.56%	61.3	0.18%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.240e+01	0.0000	627.0	5.36%	1342.6	3.91%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-13	-3.218e+01	0.0000	386.0	3.30%	751.9	2.19%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-13	-3.189e+01	0.0000	2213.0	18.93%	5586.3	16.28%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-13	-3.187e+01	0.0000	3111.0	26.61%	8093.2	23.58%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-13	-3.125e+01	0.0000	669.0	5.72%	1457.9	4.25%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-13	-3.077e+01	0.0000	1733.0	14.82%	4284.7	12.48%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-13	-3.059e+01	0.0000	90.0	0.77%	107.4	0.31%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-13	-3.036e+01	0.0000	507.0	4.34%	1057.3	3.08%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-12	-2.908e+01	0.0000	981.0	8.39%	2285.4	6.66%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-12	-2.907e+01	0.0000	3603.0	30.82%	9537.5	27.79%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-12	-2.904e+01	0.0000	233.0	1.99%	410.8	1.20%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-12	-2.898e+01	0.0000	132.0	1.13%	192.1	0.56%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-12	-2.874e+01	0.0000	966.0	8.26%	2249.3	6.55%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-12	-2.848e+01	0.0000	446.0	3.82%	919.4	2.68%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-12	-2.847e+01	0.0000	554.0	4.74%	1188.6	3.46%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-12	-2.823e+01	0.0000	1103.0	9.44%	2617.4	7.63%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-12	-2.813e+01	0.0000	617.0	5.28%	1350.1	3.93%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-12	-2.802e+01	0.0000	344.0	2.94%	674.2	1.96%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-12	-2.801e+01	0.0000	1655.0	14.16%	4109.3	11.97%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-12	-2.768e+01	0.0000	588.0	5.03%	1280.4	3.73%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-11	-2.725e+01	0.0000	758.0	6.48%	1720.1	5.01%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-11	-2.681e+01	0.0000	237.0	2.03%	429.8	1.25%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-11	-2.655e+01	0.0000	2479.0	21.21%	6411.6	18.68%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-11	-2.652e+01	0.0000	535.0	4.58%	1155.6	3.37%
SeqBias: C/A-bias	MMMMMMMMMM	1e-11	-2.648e+01	0.0000	11484.0	98.24%	33379.4	97.26%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-11	-2.645e+01	0.0000	810.0	6.93%	1863.9	5.43%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-11	-2.642e+01	0.0000	427.0	3.65%	887.0	2.58%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-11	-2.626e+01	0.0000	676.0	5.78%	1517.8	4.42%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-11	-2.541e+01	0.0000	470.0	4.02%	1000.9	2.92%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-11	-2.535e+01	0.0000	66.0	0.56%	74.5	0.22%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-10	-2.523e+01	0.0000	577.0	4.94%	1272.5	3.71%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-10	-2.496e+01	0.0000	175.0	1.50%	297.2	0.87%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-10	-2.491e+01	0.0000	490.0	4.19%	1054.7	3.07%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-10	-2.480e+01	0.0000	1051.0	8.99%	2518.2	7.34%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-10	-2.441e+01	0.0000	623.0	5.33%	1397.2	4.07%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-10	-2.433e+01	0.0000	344.0	2.94%	696.2	2.03%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-10	-2.424e+01	0.0000	2306.0	19.73%	5968.0	17.39%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-10	-2.423e+01	0.0000	62.0	0.53%	69.8	0.20%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-10	-2.422e+01	0.0000	527.0	4.51%	1153.8	3.36%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-10	-2.409e+01	0.0000	4026.0	34.44%	10848.5	31.61%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-10	-2.386e+01	0.0000	1436.0	12.28%	3570.6	10.40%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-10	-2.380e+01	0.0000	462.0	3.95%	992.4	2.89%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-10	-2.370e+01	0.0000	222.0	1.90%	409.8	1.19%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-10	-2.366e+01	0.0000	408.0	3.49%	858.9	2.50%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-10	-2.333e+01	0.0000	263.0	2.25%	507.8	1.48%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-10	-2.328e+01	0.0000	1106.0	9.46%	2684.8	7.82%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e-10	-2.326e+01	0.0000	1246.0	10.66%	3062.4	8.92%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-10	-2.316e+01	0.0000	4291.0	36.71%	11631.8	33.89%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-10	-2.307e+01	0.0000	1346.0	11.51%	3336.2	9.72%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-9	-2.293e+01	0.0000	2149.0	18.38%	5553.3	16.18%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-9	-2.273e+01	0.0000	1185.0	10.14%	2904.0	8.46%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-9	-2.269e+01	0.0000	410.0	3.51%	870.2	2.54%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-9	-2.227e+01	0.0000	828.0	7.08%	1954.5	5.70%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-9	-2.209e+01	0.0000	172.0	1.47%	302.4	0.88%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-9	-2.206e+01	0.0000	1662.0	14.22%	4217.6	12.29%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-9	-2.185e+01	0.0000	265.0	2.27%	520.6	1.52%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-9	-2.176e+01	0.0000	1801.0	15.41%	4606.2	13.42%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-9	-2.148e+01	0.0000	30.0	0.26%	22.7	0.07%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-9	-2.138e+01	0.0000	860.0	7.36%	2049.4	5.97%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-9	-2.125e+01	0.0000	1717.0	14.69%	4382.8	12.77%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-9	-2.121e+01	0.0000	1413.0	12.09%	3546.3	10.33%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-9	-2.121e+01	0.0000	2213.0	18.93%	5763.5	16.79%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-9	-2.081e+01	0.0000	1151.0	9.85%	2838.3	8.27%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-8	-2.064e+01	0.0000	260.0	2.22%	515.9	1.50%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-8	-2.046e+01	0.0000	730.0	6.24%	1715.9	5.00%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-8	-2.037e+01	0.0000	261.0	2.23%	519.5	1.51%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-8	-2.033e+01	0.0000	253.0	2.16%	500.3	1.46%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-8	-2.015e+01	0.0000	1707.0	14.60%	4373.6	12.74%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-8	-1.990e+01	0.0000	1402.0	11.99%	3536.7	10.31%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-8	-1.987e+01	0.0000	195.0	1.67%	365.8	1.07%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-8	-1.964e+01	0.0000	1280.0	10.95%	3206.6	9.34%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-8	-1.947e+01	0.0000	305.0	2.61%	632.2	1.84%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-8	-1.928e+01	0.0000	186.0	1.59%	347.0	1.01%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-8	-1.926e+01	0.0000	1758.0	15.04%	4530.2	13.20%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-8	-1.901e+01	0.0000	265.0	2.27%	537.2	1.57%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-8	-1.895e+01	0.0000	412.0	3.52%	904.3	2.64%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-8	-1.892e+01	0.0000	810.0	6.93%	1945.7	5.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-8	-1.857e+01	0.0000	235.0	2.01%	467.9	1.36%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-7	-1.835e+01	0.0000	35.0	0.30%	33.3	0.10%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-7	-1.826e+01	0.0000	416.0	3.56%	920.7	2.68%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-7	-1.810e+01	0.0000	489.0	4.18%	1109.4	3.23%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-7	-1.804e+01	0.0000	866.0	7.41%	2106.8	6.14%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-7	-1.801e+01	0.0000	321.0	2.75%	682.2	1.99%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-7	-1.797e+01	0.0000	806.0	6.89%	1946.5	5.67%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-7	-1.767e+01	0.0000	499.0	4.27%	1139.4	3.32%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-7	-1.752e+01	0.0000	1881.0	16.09%	4905.9	14.29%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-7	-1.732e+01	0.0000	754.0	6.45%	1815.6	5.29%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-7	-1.728e+01	0.0000	997.0	8.53%	2470.8	7.20%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-7	-1.716e+01	0.0000	479.0	4.10%	1093.0	3.18%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-7	-1.712e+01	0.0000	616.0	5.27%	1451.9	4.23%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-7	-1.689e+01	0.0000	2128.0	18.20%	5610.9	16.35%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-7	-1.670e+01	0.0000	878.0	7.51%	2156.2	6.28%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-7	-1.656e+01	0.0000	543.0	4.64%	1265.3	3.69%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e-7	-1.640e+01	0.0000	206.0	1.76%	410.7	1.20%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-7	-1.639e+01	0.0000	299.0	2.56%	639.6	1.86%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-7	-1.621e+01	0.0000	409.0	3.50%	920.4	2.68%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-6	-1.594e+01	0.0000	151.0	1.29%	282.7	0.82%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-6	-1.552e+01	0.0000	1375.0	11.76%	3535.5	10.30%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-6	-1.549e+01	0.0000	1218.0	10.42%	3102.0	9.04%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-6	-1.545e+01	0.0000	505.0	4.32%	1177.9	3.43%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-6	-1.536e+01	0.0000	955.0	8.17%	2384.3	6.95%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-6	-1.513e+01	0.0000	355.0	3.04%	791.5	2.31%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-6	-1.479e+01	0.0000	776.0	6.64%	1907.3	5.56%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-6	-1.457e+01	0.0000	17.0	0.15%	11.6	0.03%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-6	-1.457e+01	0.0000	461.0	3.94%	1071.3	3.12%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-6	-1.436e+01	0.0000	259.0	2.22%	555.0	1.62%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-6	-1.419e+01	0.0000	496.0	4.24%	1167.0	3.40%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-6	-1.413e+01	0.0000	2104.0	18.00%	5603.7	16.33%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-6	-1.406e+01	0.0000	818.0	7.00%	2031.1	5.92%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-6	-1.400e+01	0.0000	671.0	5.74%	1635.8	4.77%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-6	-1.387e+01	0.0000	978.0	8.37%	2470.3	7.20%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-6	-1.384e+01	0.0000	159.0	1.36%	312.8	0.91%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-5	-1.375e+01	0.0000	81.0	0.69%	133.4	0.39%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-5	-1.374e+01	0.0000	388.0	3.32%	889.3	2.59%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-5	-1.370e+01	0.0000	229.0	1.96%	484.2	1.41%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-5	-1.367e+01	0.0000	1081.0	9.25%	2756.5	8.03%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-5	-1.354e+01	0.0000	1946.0	16.65%	5171.3	15.07%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-5	-1.354e+01	0.0000	393.0	3.36%	904.2	2.63%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-5	-1.316e+01	0.0000	1699.0	14.53%	4485.4	13.07%
SeqBias: GA-repeat	GAGAGAGAGA	1e-5	-1.296e+01	0.0000	3483.0	29.79%	9568.5	27.88%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-5	-1.295e+01	0.0000	274.0	2.34%	603.5	1.76%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-5	-1.260e+01	0.0000	276.0	2.36%	611.6	1.78%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-5	-1.245e+01	0.0000	149.0	1.27%	296.4	0.86%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-5	-1.230e+01	0.0000	1902.0	16.27%	5076.3	14.79%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e-5	-1.218e+01	0.0000	157.0	1.34%	317.9	0.93%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-5	-1.210e+01	0.0000	1457.0	12.46%	3830.5	11.16%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-5	-1.205e+01	0.0000	287.0	2.46%	644.7	1.88%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-5	-1.195e+01	0.0000	1727.0	14.77%	4591.9	13.38%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-5	-1.189e+01	0.0000	463.0	3.96%	1107.0	3.23%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.181e+01	0.0000	191.0	1.63%	403.1	1.17%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-5	-1.178e+01	0.0000	265.0	2.27%	590.8	1.72%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-5	-1.169e+01	0.0000	251.0	2.15%	555.8	1.62%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-5	-1.163e+01	0.0000	429.0	3.67%	1019.2	2.97%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-4	-1.132e+01	0.0000	49.0	0.42%	73.8	0.21%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-4	-1.120e+01	0.0000	1938.0	16.58%	5205.4	15.17%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-4	-1.114e+01	0.0000	67.0	0.57%	112.1	0.33%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-4	-1.110e+01	0.0000	471.0	4.03%	1137.8	3.32%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-4	-1.092e+01	0.0001	871.0	7.45%	2226.9	6.49%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-4	-1.085e+01	0.0001	83.0	0.71%	149.5	0.44%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-4	-1.071e+01	0.0001	1502.0	12.85%	3988.0	11.62%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-4	-1.057e+01	0.0001	1280.0	10.95%	3368.4	9.82%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-4	-1.051e+01	0.0001	445.0	3.81%	1076.0	3.14%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-4	-1.051e+01	0.0001	445.0	3.81%	1076.0	3.14%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-4	-1.043e+01	0.0001	1260.0	10.78%	3315.5	9.66%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-4	-1.033e+01	0.0001	1203.0	10.29%	3158.3	9.20%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-4	-1.031e+01	0.0001	2658.0	22.74%	7280.3	21.21%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-4	-1.024e+01	0.0001	583.0	4.99%	1450.5	4.23%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-4	-1.021e+01	0.0001	554.0	4.74%	1372.6	4.00%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-4	-1.020e+01	0.0001	454.0	3.88%	1103.9	3.22%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-4	-1.018e+01	0.0001	1343.0	11.49%	3553.3	10.35%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e-4	-1.012e+01	0.0001	448.0	3.83%	1088.8	3.17%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-4	-1.009e+01	0.0001	1040.0	8.90%	2709.2	7.89%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-4	-1.001e+01	0.0001	720.0	6.16%	1827.6	5.33%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-4	-9.981e+00	0.0001	2825.0	24.17%	7769.9	22.64%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-4	-9.922e+00	0.0002	425.0	3.64%	1029.2	3.00%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-4	-9.891e+00	0.0002	964.0	8.25%	2502.1	7.29%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-4	-9.767e+00	0.0002	686.0	5.87%	1739.0	5.07%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-4	-9.740e+00	0.0002	426.0	3.64%	1035.0	3.02%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-4	-9.721e+00	0.0002	2346.0	20.07%	6406.7	18.67%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-4	-9.642e+00	0.0002	93.0	0.80%	179.0	0.52%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-4	-9.575e+00	0.0002	798.0	6.83%	2049.8	5.97%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-4	-9.392e+00	0.0003	367.0	3.14%	881.2	2.57%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-4	-9.374e+00	0.0003	943.0	8.07%	2454.2	7.15%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-4	-9.316e+00	0.0003	1935.0	16.55%	5247.3	15.29%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-4	-9.216e+00	0.0003	501.0	4.29%	1243.0	3.62%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-3	-9.111e+00	0.0003	534.0	4.57%	1335.0	3.89%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-3	-9.099e+00	0.0003	1654.0	14.15%	4456.8	12.99%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-3	-9.064e+00	0.0003	128.0	1.09%	266.4	0.78%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-3	-9.015e+00	0.0004	57.0	0.49%	98.9	0.29%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-8.957e+00	0.0004	137.0	1.17%	289.8	0.84%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-3	-8.882e+00	0.0004	1964.0	16.80%	5342.1	15.57%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-3	-8.813e+00	0.0004	287.0	2.46%	676.6	1.97%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-8.765e+00	0.0005	158.0	1.35%	343.0	1.00%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-8.506e+00	0.0006	90.0	0.77%	177.5	0.52%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-3	-8.350e+00	0.0007	1021.0	8.73%	2694.0	7.85%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-3	-8.347e+00	0.0007	247.0	2.11%	576.2	1.68%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-3	-8.263e+00	0.0007	221.0	1.89%	509.3	1.48%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-3	-8.216e+00	0.0008	25.0	0.21%	33.4	0.10%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-3	-8.012e+00	0.0010	1814.0	15.52%	4941.8	14.40%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-7.762e+00	0.0012	82.0	0.70%	163.0	0.47%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-3	-7.739e+00	0.0012	161.0	1.38%	359.9	1.05%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-3	-7.737e+00	0.0012	2652.0	22.69%	7348.4	21.41%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e-3	-7.733e+00	0.0012	471.0	4.03%	1184.6	3.45%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-3	-7.713e+00	0.0013	100.0	0.86%	206.6	0.60%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-3	-7.665e+00	0.0013	736.0	6.30%	1914.3	5.58%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-3	-7.572e+00	0.0015	229.0	1.96%	537.4	1.57%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-3	-7.462e+00	0.0016	11635.0	99.53%	34074.7	99.29%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e-3	-7.423e+00	0.0017	923.0	7.90%	2440.0	7.11%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e-3	-7.350e+00	0.0018	222.0	1.90%	522.0	1.52%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-3	-7.312e+00	0.0019	123.0	1.05%	266.3	0.78%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-3	-7.228e+00	0.0020	1723.0	14.74%	4706.3	13.71%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-3	-7.226e+00	0.0020	1385.0	11.85%	3746.7	10.92%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-3	-7.104e+00	0.0023	483.0	4.13%	1227.8	3.58%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-3	-7.103e+00	0.0023	9.0	0.08%	7.3	0.02%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-3	-7.022e+00	0.0025	945.0	8.08%	2511.3	7.32%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-6.925e+00	0.0027	235.0	2.01%	560.4	1.63%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-6.905e+00	0.0027	1033.0	8.84%	2761.4	8.05%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-6.848e+00	0.0029	276.0	2.36%	670.7	1.95%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-2	-6.719e+00	0.0033	1651.0	14.12%	4517.5	13.16%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-6.672e+00	0.0034	74.0	0.63%	150.0	0.44%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.515e+00	0.0040	206.0	1.76%	488.0	1.42%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-2	-6.504e+00	0.0040	229.0	1.96%	549.3	1.60%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-6.490e+00	0.0041	218.0	1.86%	520.6	1.52%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-2	-6.481e+00	0.0041	1530.0	13.09%	4180.5	12.18%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-6.433e+00	0.0043	43.0	0.37%	77.5	0.23%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-2	-6.424e+00	0.0043	420.0	3.59%	1066.8	3.11%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-6.409e+00	0.0044	291.0	2.49%	716.7	2.09%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-6.407e+00	0.0044	119.0	1.02%	263.1	0.77%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-2	-6.371e+00	0.0045	1021.0	8.73%	2741.2	7.99%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-2	-6.264e+00	0.0050	442.0	3.78%	1129.7	3.29%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-2	-6.199e+00	0.0054	19.0	0.16%	26.4	0.08%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-6.101e+00	0.0059	380.0	3.25%	962.6	2.80%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-2	-6.063e+00	0.0061	321.0	2.75%	802.9	2.34%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e-2	-6.052e+00	0.0062	91.0	0.78%	195.4	0.57%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-2	-6.046e+00	0.0062	2518.0	21.54%	7027.0	20.48%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-2	-5.926e+00	0.0070	779.0	6.66%	2072.1	6.04%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-5.914e+00	0.0070	1381.0	11.81%	3774.1	11.00%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-2	-5.910e+00	0.0070	24.0	0.21%	37.9	0.11%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-5.856e+00	0.0074	798.0	6.83%	2127.9	6.20%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-2	-5.854e+00	0.0074	34.0	0.29%	59.5	0.17%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e-2	-5.838e+00	0.0075	41.0	0.35%	75.2	0.22%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-2	-5.812e+00	0.0077	1312.0	11.22%	3581.2	10.44%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-2	-5.739e+00	0.0082	206.0	1.76%	497.7	1.45%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-2	-5.618e+00	0.0093	44.0	0.38%	83.2	0.24%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-5.617e+00	0.0093	400.0	3.42%	1025.4	2.99%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-2	-5.532e+00	0.0101	2012.0	17.21%	5592.8	16.30%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-2	-5.493e+00	0.0104	1985.0	16.98%	5516.9	16.08%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-2	-5.484e+00	0.0105	1368.0	11.70%	3751.4	10.93%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e-2	-5.440e+00	0.0109	20.0	0.17%	30.4	0.09%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-2	-5.416e+00	0.0112	118.0	1.01%	269.8	0.79%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-2	-5.312e+00	0.0124	157.0	1.34%	372.6	1.09%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-2	-5.240e+00	0.0133	829.0	7.09%	2230.4	6.50%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-2	-5.233e+00	0.0133	3080.0	26.35%	8687.4	25.31%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-5.207e+00	0.0136	141.0	1.21%	331.9	0.97%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-2	-5.201e+00	0.0137	874.0	7.48%	2358.1	6.87%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-2	-5.200e+00	0.0137	297.0	2.54%	750.1	2.19%
SeqBias: G/A bias	RRRRRRRRRR	1e-2	-5.171e+00	0.0140	11255.0	96.28%	32882.7	95.81%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-2	-5.147e+00	0.0143	140.0	1.20%	329.7	0.96%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-5.058e+00	0.0156	171.0	1.46%	412.7	1.20%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-2	-5.044e+00	0.0158	467.0	3.99%	1221.4	3.56%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-2	-5.031e+00	0.0160	1717.0	14.69%	4765.3	13.89%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.008e+00	0.0163	60.0	0.51%	125.3	0.37%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e-2	-5.007e+00	0.0163	13.0	0.11%	17.2	0.05%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-2	-4.996e+00	0.0164	96.0	0.82%	216.1	0.63%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-4.957e+00	0.0171	512.0	4.38%	1348.8	3.93%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-2	-4.940e+00	0.0173	1572.0	13.45%	4354.0	12.69%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-2	-4.919e+00	0.0176	214.0	1.83%	529.1	1.54%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-2	-4.878e+00	0.0183	1094.0	9.36%	2991.1	8.72%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-4.872e+00	0.0184	121.0	1.04%	282.3	0.82%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-2	-4.825e+00	0.0192	521.0	4.46%	1376.6	4.01%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-2	-4.821e+00	0.0193	6.0	0.05%	5.6	0.02%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-2	-4.818e+00	0.0193	2030.0	17.37%	5673.7	16.53%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-4.792e+00	0.0197	288.0	2.46%	732.2	2.13%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-4.670e+00	0.0222	161.0	1.38%	390.2	1.14%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-2	-4.637e+00	0.0229	1159.0	9.91%	3185.0	9.28%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-2	-4.632e+00	0.0230	894.0	7.65%	2431.4	7.08%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e-1	-4.594e+00	0.0238	237.0	2.03%	596.4	1.74%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-4.589e+00	0.0239	1300.0	11.12%	3588.8	10.46%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-4.583e+00	0.0240	81.0	0.69%	181.6	0.53%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-4.578e+00	0.0240	12.0	0.10%	16.4	0.05%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-1	-4.555e+00	0.0245	77.0	0.66%	171.4	0.50%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-4.536e+00	0.0250	325.0	2.78%	838.7	2.44%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e-1	-4.506e+00	0.0257	143.0	1.22%	344.5	1.00%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-1	-4.421e+00	0.0279	563.0	4.82%	1503.7	4.38%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-4.413e+00	0.0280	82.0	0.70%	185.9	0.54%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-1	-4.350e+00	0.0298	1698.0	14.53%	4738.7	13.81%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-1	-4.322e+00	0.0306	276.0	2.36%	708.0	2.06%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-1	-4.261e+00	0.0324	25.0	0.21%	45.6	0.13%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-4.260e+00	0.0324	1633.0	13.97%	4555.7	13.27%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-4.255e+00	0.0325	216.0	1.85%	544.8	1.59%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-4.228e+00	0.0333	74.0	0.63%	166.4	0.48%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-4.220e+00	0.0335	63.0	0.54%	138.5	0.40%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-1	-4.207e+00	0.0338	268.0	2.29%	687.8	2.00%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-1	-4.191e+00	0.0343	567.0	4.85%	1520.0	4.43%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-4.182e+00	0.0345	20.0	0.17%	34.0	0.10%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-1	-4.030e+00	0.0401	323.0	2.76%	842.1	2.45%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e-1	-3.986e+00	0.0418	97.0	0.83%	229.0	0.67%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-3.934e+00	0.0439	288.0	2.46%	747.7	2.18%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.917e+00	0.0446	131.0	1.12%	319.7	0.93%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.906e+00	0.0450	325.0	2.78%	850.1	2.48%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.900e+00	0.0452	330.0	2.82%	864.1	2.52%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-3.893e+00	0.0454	910.0	7.78%	2500.2	7.29%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.857e+00	0.0469	72.0	0.62%	164.6	0.48%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-1	-3.831e+00	0.0480	427.0	3.65%	1136.5	3.31%
SeqBias: CG bias	SSSSSSSSSS	1e-1	-3.820e+00	0.0485	3619.0	30.96%	10329.3	30.10%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-1	-3.806e+00	0.0491	129.0	1.10%	315.7	0.92%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-3.800e+00	0.0492	482.0	4.12%	1291.7	3.76%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.737e+00	0.0523	11.0	0.09%	16.1	0.05%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.732e+00	0.0525	155.0	1.33%	386.5	1.13%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.731e+00	0.0525	21.0	0.18%	38.9	0.11%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-1	-3.706e+00	0.0536	967.0	8.27%	2669.5	7.78%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.705e+00	0.0536	94.0	0.80%	223.1	0.65%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-1	-3.691e+00	0.0542	1583.0	13.54%	4436.9	12.93%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-1	-3.622e+00	0.0580	80.0	0.68%	187.5	0.55%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.599e+00	0.0592	41.0	0.35%	87.3	0.25%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.525e+00	0.0636	38.0	0.33%	80.7	0.24%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-3.495e+00	0.0654	21.0	0.18%	39.6	0.12%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.484e+00	0.0659	107.0	0.92%	260.4	0.76%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e-1	-3.461e+00	0.0673	26.0	0.22%	51.2	0.15%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-3.382e+00	0.0728	189.0	1.62%	484.3	1.41%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-1	-3.322e+00	0.0770	162.0	1.39%	411.7	1.20%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.285e+00	0.0798	8.0	0.07%	11.2	0.03%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.277e+00	0.0803	48.0	0.41%	107.2	0.31%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-3.261e+00	0.0814	304.0	2.60%	805.9	2.35%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-3.254e+00	0.0818	258.0	2.21%	677.5	1.97%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.227e+00	0.0838	80.0	0.68%	191.1	0.56%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-1	-3.200e+00	0.0860	143.0	1.22%	361.7	1.05%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-1	-3.167e+00	0.0887	365.0	3.12%	978.8	2.85%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-3.166e+00	0.0887	79.0	0.68%	190.0	0.55%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.164e+00	0.0887	217.0	1.86%	565.8	1.65%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-1	-3.130e+00	0.0914	3709.0	31.73%	10637.0	30.99%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-1	-3.129e+00	0.0914	2048.0	17.52%	5807.0	16.92%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e-1	-3.059e+00	0.0977	763.0	6.53%	2111.0	6.15%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-1	-3.049e+00	0.0985	92.0	0.79%	225.9	0.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-3.023e+00	0.1009	69.0	0.59%	164.7	0.48%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-3.007e+00	0.1023	166.0	1.42%	427.5	1.25%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.945e+00	0.1087	22.0	0.19%	44.1	0.13%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-1	-2.941e+00	0.1088	844.0	7.22%	2346.5	6.84%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.939e+00	0.1089	103.0	0.88%	256.3	0.75%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-1	-2.934e+00	0.1092	3514.0	30.06%	10081.7	29.38%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-1	-2.928e+00	0.1097	1108.0	9.48%	3104.1	9.04%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.917e+00	0.1107	118.0	1.01%	297.3	0.87%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.910e+00	0.1111	53.0	0.45%	123.3	0.36%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.904e+00	0.1116	108.0	0.92%	270.1	0.79%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-1	-2.893e+00	0.1127	79.0	0.68%	193.0	0.56%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-2.874e+00	0.1146	8.0	0.07%	12.2	0.04%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.849e+00	0.1172	35.0	0.30%	77.1	0.22%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-1	-2.814e+00	0.1212	45.0	0.38%	103.0	0.30%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-1	-2.767e+00	0.1267	389.0	3.33%	1056.5	3.08%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-2.765e+00	0.1267	87.0	0.74%	215.5	0.63%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-1	-2.752e+00	0.1281	357.0	3.05%	966.6	2.82%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.746e+00	0.1286	24.0	0.21%	50.1	0.15%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.699e+00	0.1345	1333.0	11.40%	3763.0	10.96%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.696e+00	0.1347	525.0	4.49%	1444.5	4.21%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-2.696e+00	0.1347	115.0	0.98%	292.7	0.85%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-2.683e+00	0.1358	173.0	1.48%	452.4	1.32%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.652e+00	0.1399	72.0	0.62%	176.5	0.51%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-2.647e+00	0.1404	16.0	0.14%	31.5	0.09%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-2.645e+00	0.1404	82.0	0.70%	203.7	0.59%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.625e+00	0.1429	235.0	2.01%	626.5	1.83%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.585e+00	0.1485	9.0	0.08%	15.8	0.05%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.579e+00	0.1490	706.0	6.04%	1965.8	5.73%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-1	-2.549e+00	0.1533	180.0	1.54%	474.3	1.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.545e+00	0.1535	791.0	6.77%	2210.4	6.44%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-1	-2.534e+00	0.1549	1085.0	9.28%	3056.9	8.91%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-1	-2.523e+00	0.1563	187.0	1.60%	494.6	1.44%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.497e+00	0.1603	219.0	1.87%	584.2	1.70%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-1	-2.454e+00	0.1670	7.0	0.06%	11.5	0.03%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e-1	-2.397e+00	0.1763	47.0	0.40%	112.3	0.33%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.372e+00	0.1805	289.0	2.47%	784.5	2.29%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.368e+00	0.1809	612.0	5.24%	1704.2	4.97%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.358e+00	0.1823	37.0	0.32%	86.1	0.25%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.242e+00	0.2044	808.0	6.91%	2272.9	6.62%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.202e+00	0.2122	30.0	0.26%	69.6	0.20%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.169e+00	0.2190	930.0	7.96%	2627.3	7.66%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.156e+00	0.2214	15.0	0.13%	32.0	0.09%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.121e+00	0.2290	7.0	0.06%	12.9	0.04%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.103e+00	0.2325	959.0	8.20%	2714.9	7.91%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.097e+00	0.2332	38.0	0.33%	91.7	0.27%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-2.097e+00	0.2332	38.0	0.33%	92.0	0.27%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-2.087e+00	0.2350	1168.0	9.99%	3319.6	9.67%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.080e+00	0.2362	864.0	7.39%	2441.5	7.11%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-2.055e+00	0.2419	393.0	3.36%	1089.7	3.18%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.030e+00	0.2474	34.0	0.29%	81.7	0.24%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-2.018e+00	0.2499	474.0	4.05%	1322.3	3.85%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.956e+00	0.2654	1351.0	11.56%	3857.9	11.24%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-1.949e+00	0.2669	72.0	0.62%	185.5	0.54%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.940e+00	0.2686	316.0	2.70%	873.4	2.55%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.919e+00	0.2740	511.0	4.37%	1432.1	4.17%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-1.902e+00	0.2782	284.0	2.43%	783.3	2.28%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.897e+00	0.2791	71.0	0.61%	184.0	0.54%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.891e+00	0.2802	10.0	0.09%	20.9	0.06%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.864e+00	0.2873	319.0	2.73%	884.3	2.58%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.859e+00	0.2882	1026.0	8.78%	2922.0	8.51%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.824e+00	0.2979	80.0	0.68%	209.4	0.61%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.818e+00	0.2990	1157.0	9.90%	3303.8	9.63%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.779e+00	0.3104	26.0	0.22%	62.1	0.18%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.733e+00	0.3243	48.0	0.41%	122.1	0.36%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-1.733e+00	0.3243	2035.0	17.41%	5863.0	17.08%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.723e+00	0.3266	34.0	0.29%	84.8	0.25%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-1.722e+00	0.3266	919.0	7.86%	2619.1	7.63%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.720e+00	0.3266	1028.0	8.79%	2935.2	8.55%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.708e+00	0.3296	94.0	0.80%	250.1	0.73%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.701e+00	0.3313	337.0	2.88%	941.4	2.74%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.688e+00	0.3352	240.0	2.05%	664.3	1.94%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.629e+00	0.3549	566.0	4.84%	1603.1	4.67%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.627e+00	0.3550	21.0	0.18%	50.2	0.15%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.597e+00	0.3650	79.0	0.68%	210.8	0.61%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.584e+00	0.3692	734.0	6.28%	2091.5	6.09%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.575e+00	0.3711	71.0	0.61%	188.9	0.55%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.575e+00	0.3711	71.0	0.61%	188.9	0.55%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.561e+00	0.3756	26.0	0.22%	64.0	0.19%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.539e+00	0.3834	34.0	0.29%	86.3	0.25%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.523e+00	0.3891	1391.0	11.90%	4003.8	11.67%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.504e+00	0.3958	539.0	4.61%	1531.5	4.46%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.477e+00	0.4057	636.0	5.44%	1813.1	5.28%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.469e+00	0.4084	891.0	7.62%	2553.8	7.44%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.464e+00	0.4097	16.0	0.14%	38.0	0.11%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.458e+00	0.4114	532.0	4.55%	1513.3	4.41%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.457e+00	0.4114	56.0	0.48%	148.5	0.43%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.457e+00	0.4114	816.0	6.98%	2336.7	6.81%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.452e+00	0.4118	77.0	0.66%	207.0	0.60%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.421e+00	0.4240	64.0	0.55%	171.8	0.50%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.417e+00	0.4249	619.0	5.30%	1767.6	5.15%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.384e+00	0.4386	1126.0	9.63%	3242.5	9.45%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-1.365e+00	0.4461	792.0	6.78%	2272.7	6.62%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.333e+00	0.4597	97.0	0.83%	266.2	0.78%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.331e+00	0.4598	91.0	0.78%	249.1	0.73%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.327e+00	0.4607	32.0	0.27%	83.0	0.24%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.322e+00	0.4623	161.0	1.38%	449.8	1.31%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.316e+00	0.4644	505.0	4.32%	1442.3	4.20%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-1.301e+00	0.4707	2.0	0.02%	3.9	0.01%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.294e+00	0.4732	8.0	0.07%	19.0	0.06%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.288e+00	0.4751	78.0	0.67%	213.2	0.62%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.264e+00	0.4856	472.0	4.04%	1349.8	3.93%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.244e+00	0.4947	59.0	0.50%	160.3	0.47%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.242e+00	0.4951	310.0	2.65%	881.7	2.57%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.216e+00	0.5073	711.0	6.08%	2046.7	5.96%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.208e+00	0.5106	133.0	1.14%	373.0	1.09%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-1.205e+00	0.5111	269.0	2.30%	764.1	2.23%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.190e+00	0.5178	900.0	7.70%	2598.2	7.57%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.173e+00	0.5258	27.0	0.23%	71.8	0.21%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.161e+00	0.5313	44.0	0.38%	120.0	0.35%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.153e+00	0.5346	77.0	0.66%	213.9	0.62%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.110e+00	0.5570	43.0	0.37%	118.0	0.34%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.099e+00	0.5624	460.0	3.93%	1323.8	3.86%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.093e+00	0.5648	3.0	0.03%	6.4	0.02%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-1.090e+00	0.5657	955.0	8.17%	2766.8	8.06%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.085e+00	0.5673	382.0	3.27%	1097.6	3.20%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.076e+00	0.5718	195.0	1.67%	555.8	1.62%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.067e+00	0.5760	425.0	3.64%	1223.6	3.57%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.049e+00	0.5855	1367.0	11.69%	3973.3	11.58%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.030e+00	0.5955	403.0	3.45%	1161.5	3.38%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.025e+00	0.5976	1371.0	11.73%	3987.8	11.62%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.018e+00	0.6007	139.0	1.19%	395.1	1.15%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.014e+00	0.6021	239.0	2.04%	685.5	2.00%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-1.004e+00	0.6072	254.0	2.17%	729.3	2.13%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.001e+00	0.6080	4.0	0.03%	9.3	0.03%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-9.949e-01	0.6108	66.0	0.56%	185.8	0.54%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.948e-01	0.6108	36.0	0.31%	99.7	0.29%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-9.755e-01	0.6207	1276.0	10.92%	3714.9	10.82%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-9.728e-01	0.6214	512.0	4.38%	1482.4	4.32%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-9.698e-01	0.6222	954.0	8.16%	2773.7	8.08%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.688e-01	0.6222	32.0	0.27%	88.0	0.26%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-9.418e-01	0.6378	286.0	2.45%	825.4	2.41%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.414e-01	0.6378	105.0	0.90%	299.8	0.87%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.335e-01	0.6410	190.0	1.63%	546.3	1.59%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-9.285e-01	0.6433	2.0	0.02%	4.1	0.01%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-9.234e-01	0.6455	30.0	0.26%	83.4	0.24%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.198e-01	0.6468	241.0	2.06%	695.0	2.03%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-9.191e-01	0.6468	73.0	0.62%	207.6	0.60%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-9.094e-01	0.6514	552.0	4.72%	1603.3	4.67%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-9.060e-01	0.6526	392.0	3.35%	1136.3	3.31%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-8.980e-01	0.6568	1287.0	11.01%	3754.5	10.94%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-8.816e-01	0.6666	696.0	5.95%	2026.6	5.91%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-8.652e-01	0.6765	77.0	0.66%	220.6	0.64%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-8.582e-01	0.6802	79.0	0.68%	226.3	0.66%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.578e-01	0.6802	8.0	0.07%	21.5	0.06%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-8.520e-01	0.6822	893.0	7.64%	2605.3	7.59%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-8.464e-01	0.6849	127.0	1.09%	366.6	1.07%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-8.312e-01	0.6943	373.0	3.19%	1085.4	3.16%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-8.284e-01	0.6952	1136.0	9.72%	3319.2	9.67%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-8.129e-01	0.7049	179.0	1.53%	519.2	1.51%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-8.110e-01	0.7052	623.0	5.33%	1818.0	5.30%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-8.016e-01	0.7107	1264.0	10.81%	3697.9	10.77%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-8.007e-01	0.7107	691.0	5.91%	2018.1	5.88%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-7.906e-01	0.7163	408.0	3.49%	1190.5	3.47%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.895e-01	0.7163	13.0	0.11%	36.9	0.11%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-7.886e-01	0.7163	193.0	1.65%	561.4	1.64%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.826e-01	0.7187	210.0	1.80%	611.9	1.78%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-7.776e-01	0.7212	519.0	4.44%	1516.9	4.42%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-7.693e-01	0.7261	49.0	0.42%	141.2	0.41%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-7.637e-01	0.7290	391.0	3.34%	1142.4	3.33%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-7.351e-01	0.7490	215.0	1.84%	628.5	1.83%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.138e-01	0.7639	54.0	0.46%	157.7	0.46%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-6.958e-01	0.7766	510.0	4.36%	1496.5	4.36%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-6.916e-01	0.7786	1278.0	10.93%	3751.2	10.93%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.915e-01	0.7786	157.0	1.34%	460.8	1.34%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.886e-01	0.7786	17.0	0.15%	49.8	0.14%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-6.881e-01	0.7786	332.0	2.84%	974.3	2.84%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-6.853e-01	0.7788	272.0	2.33%	798.2	2.33%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-6.793e-01	0.7822	198.0	1.69%	581.4	1.69%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-6.555e-01	0.7998	1319.0	11.28%	3876.0	11.29%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.500e-01	0.8030	156.0	1.33%	459.9	1.34%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-6.471e-01	0.8042	278.0	2.38%	818.3	2.38%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.445e-01	0.8050	32.0	0.27%	94.3	0.27%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.387e-01	0.8084	270.0	2.31%	795.7	2.32%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.367e-01	0.8088	509.0	4.35%	1498.8	4.37%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-6.282e-01	0.8145	120.0	1.03%	354.8	1.03%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-6.269e-01	0.8145	16.0	0.14%	47.9	0.14%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.897e-01	0.8439	91.0	0.78%	271.0	0.79%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.870e-01	0.8449	116.0	0.99%	344.2	1.00%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-5.738e-01	0.8548	647.0	5.53%	1910.8	5.57%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.661e-01	0.8602	17.0	0.15%	51.3	0.15%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-5.635e-01	0.8611	10.0	0.09%	30.9	0.09%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.595e-01	0.8632	30.0	0.26%	90.3	0.26%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-5.586e-01	0.8632	214.0	1.83%	635.9	1.85%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.387e-01	0.8787	4.0	0.03%	12.7	0.04%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-5.364e-01	0.8794	332.0	2.84%	985.1	2.87%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-5.315e-01	0.8825	935.0	8.00%	2763.3	8.05%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-5.253e-01	0.8866	3.0	0.03%	9.7	0.03%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.246e-01	0.8866	113.0	0.97%	338.9	0.99%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-5.244e-01	0.8866	169.0	1.45%	504.7	1.47%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-5.148e-01	0.8920	674.0	5.77%	1996.4	5.82%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-5.044e-01	0.9000	71.0	0.61%	214.2	0.62%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.029e-01	0.9000	393.0	3.36%	1168.1	3.40%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.013e-01	0.9000	2.0	0.02%	7.0	0.02%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-5.013e-01	0.9000	2.0	0.02%	6.8	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.831e-01	0.9139	37.0	0.32%	114.0	0.33%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-4.670e-01	0.9274	19.0	0.16%	59.8	0.17%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-4.513e-01	0.9407	510.0	4.36%	1519.7	4.43%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.512e-01	0.9407	311.0	2.66%	930.2	2.71%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.499e-01	0.9407	99.0	0.85%	300.3	0.88%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.463e-01	0.9413	32.0	0.27%	99.9	0.29%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.408e-01	0.9451	1246.0	10.66%	3693.9	10.76%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.335e-01	0.9506	461.0	3.94%	1376.1	4.01%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-4.128e-01	0.9691	294.0	2.51%	883.7	2.58%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-4.042e-01	0.9760	150.0	1.28%	455.4	1.33%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-3.968e-01	0.9819	902.0	7.72%	2685.5	7.83%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-3.929e-01	0.9842	201.0	1.72%	608.2	1.77%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-3.927e-01	0.9842	123.0	1.05%	375.6	1.09%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.923e-01	0.9842	85.0	0.73%	261.8	0.76%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-3.865e-01	0.9863	632.0	5.41%	1888.3	5.50%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.793e-01	0.9920	52.0	0.44%	162.9	0.47%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.765e-01	0.9934	29.0	0.25%	92.8	0.27%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.725e-01	0.9959	708.0	6.06%	2115.5	6.16%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-3.661e-01	1.0000	707.0	6.05%	2113.8	6.16%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.631e-01	1.0000	891.0	7.62%	2658.6	7.75%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.605e-01	1.0000	729.0	6.24%	2180.0	6.35%
Tal1	CATCTG	1e0	-3.591e-01	1.0000	382.0	3.27%	1150.7	3.35%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-3.554e-01	1.0000	724.0	6.19%	2165.7	6.31%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-3.523e-01	1.0000	229.0	1.96%	695.4	2.03%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.463e-01	1.0000	19.0	0.16%	62.5	0.18%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.453e-01	1.0000	1284.0	10.98%	3823.0	11.14%
 Ik-1	NHTTGGGAATRCC	1e0	-3.406e-01	1.0000	11690.0	100.00%	34319.2	100.00%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.398e-01	1.0000	39.0	0.33%	124.7	0.36%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-3.384e-01	1.0000	86.0	0.74%	267.0	0.78%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-3.382e-01	1.0000	797.0	6.82%	2384.1	6.95%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.332e-01	1.0000	51.0	0.44%	161.6	0.47%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-3.306e-01	1.0000	6.0	0.05%	21.5	0.06%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-3.159e-01	1.0000	1004.0	8.59%	3001.9	8.75%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-3.158e-01	1.0000	794.0	6.79%	2379.5	6.93%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-3.149e-01	1.0000	285.0	2.44%	866.8	2.53%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.102e-01	1.0000	982.0	8.40%	2937.9	8.56%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.957e-01	1.0000	1.0	0.01%	4.1	0.01%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.890e-01	1.0000	423.0	3.62%	1281.7	3.73%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.572e-01	1.0000	5.0	0.04%	19.8	0.06%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.572e-01	1.0000	5.0	0.04%	19.7	0.06%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.538e-01	1.0000	40.0	0.34%	131.9	0.38%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-2.449e-01	1.0000	474.0	4.05%	1440.3	4.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.418e-01	1.0000	438.0	3.75%	1334.0	3.89%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.417e-01	1.0000	22.0	0.19%	75.2	0.22%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.416e-01	1.0000	17.0	0.15%	59.6	0.17%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.416e-01	1.0000	17.0	0.15%	59.6	0.17%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.416e-01	1.0000	17.0	0.15%	59.0	0.17%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.413e-01	1.0000	301.0	2.57%	923.7	2.69%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-2.387e-01	1.0000	479.0	4.10%	1456.8	4.24%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.386e-01	1.0000	75.0	0.64%	240.9	0.70%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-2.253e-01	1.0000	11.0	0.09%	40.0	0.12%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.245e-01	1.0000	152.0	1.30%	476.7	1.39%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.227e-01	1.0000	23.0	0.20%	79.4	0.23%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.214e-01	1.0000	14.0	0.12%	50.8	0.15%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.021e-01	1.0000	196.0	1.68%	612.0	1.78%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.019e-01	1.0000	89.0	0.76%	286.0	0.83%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.977e-01	1.0000	18.0	0.15%	64.0	0.19%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-1.976e-01	1.0000	390.0	3.34%	1197.6	3.49%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.873e-01	1.0000	4.0	0.03%	17.2	0.05%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-1.825e-01	1.0000	155.0	1.33%	490.7	1.43%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.804e-01	1.0000	115.0	0.98%	368.0	1.07%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-1.803e-01	1.0000	2402.0	20.55%	7176.9	20.91%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.776e-01	1.0000	215.0	1.84%	673.3	1.96%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.741e-01	1.0000	63.0	0.54%	208.5	0.61%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.737e-01	1.0000	956.0	8.18%	2893.1	8.43%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.707e-01	1.0000	581.0	4.97%	1775.4	5.17%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.702e-01	1.0000	960.0	8.21%	2906.7	8.47%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.675e-01	1.0000	10811.0	92.48%	31821.1	92.72%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.664e-01	1.0000	107.0	0.92%	346.0	1.01%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.654e-01	1.0000	1181.0	10.10%	3565.8	10.39%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.638e-01	1.0000	13.0	0.11%	49.6	0.14%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.579e-01	1.0000	2.0	0.02%	10.9	0.03%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.558e-01	1.0000	510.0	4.36%	1566.6	4.56%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.468e-01	1.0000	357.0	3.05%	1109.0	3.23%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-1.455e-01	1.0000	209.0	1.79%	660.4	1.92%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.417e-01	1.0000	176.0	1.51%	560.6	1.63%
SeqBias: CA-repeat	CACACACACA	1e0	-1.344e-01	1.0000	3403.0	29.11%	10155.8	29.59%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.342e-01	1.0000	851.0	7.28%	2593.4	7.56%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.322e-01	1.0000	138.0	1.18%	445.5	1.30%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.301e-01	1.0000	49.0	0.42%	168.4	0.49%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.286e-01	1.0000	90.0	0.77%	297.7	0.87%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.265e-01	1.0000	72.0	0.62%	241.7	0.70%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.265e-01	1.0000	139.0	1.19%	449.8	1.31%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.262e-01	1.0000	733.0	6.27%	2243.5	6.54%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.262e-01	1.0000	290.0	2.48%	910.5	2.65%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.250e-01	1.0000	86.0	0.74%	285.1	0.83%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.229e-01	1.0000	132.0	1.13%	428.5	1.25%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.225e-01	1.0000	1384.0	11.84%	4187.0	12.20%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.214e-01	1.0000	99.0	0.85%	326.8	0.95%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.209e-01	1.0000	554.0	4.74%	1708.3	4.98%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.180e-01	1.0000	322.0	2.75%	1009.5	2.94%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.070e-01	1.0000	787.0	6.73%	2412.5	7.03%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.035e-01	1.0000	299.0	2.56%	943.5	2.75%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-1.023e-01	1.0000	641.0	5.48%	1976.8	5.76%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.015e-01	1.0000	592.0	5.06%	1829.1	5.33%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.011e-01	1.0000	19.0	0.16%	73.3	0.21%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-9.300e-02	1.0000	15.0	0.13%	61.0	0.18%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-8.681e-02	1.0000	1012.0	8.66%	3095.9	9.02%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-8.677e-02	1.0000	438.0	3.75%	1370.7	3.99%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-8.545e-02	1.0000	210.0	1.80%	676.7	1.97%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-8.126e-02	1.0000	402.0	3.44%	1263.1	3.68%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-7.769e-02	1.0000	152.0	1.30%	500.0	1.46%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-7.656e-02	1.0000	333.0	2.85%	1055.3	3.08%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-7.651e-02	1.0000	169.0	1.45%	552.8	1.61%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-7.638e-02	1.0000	1498.0	12.81%	4552.2	13.26%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-7.366e-02	1.0000	950.0	8.13%	2917.0	8.50%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-7.304e-02	1.0000	637.0	5.45%	1977.5	5.76%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-7.224e-02	1.0000	268.0	2.29%	858.3	2.50%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-7.200e-02	1.0000	211.0	1.80%	683.5	1.99%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.933e-02	1.0000	150.0	1.28%	495.2	1.44%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.803e-02	1.0000	83.0	0.71%	285.1	0.83%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-6.717e-02	1.0000	100.0	0.86%	339.8	0.99%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.695e-02	1.0000	2.0	0.02%	13.7	0.04%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.681e-02	1.0000	1047.0	8.96%	3212.2	9.36%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-6.558e-02	1.0000	104.0	0.89%	352.8	1.03%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e0	-6.052e-02	1.0000	224.0	1.92%	728.0	2.12%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.985e-02	1.0000	114.0	0.98%	385.1	1.12%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-5.876e-02	1.0000	166.0	1.42%	548.0	1.60%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-5.858e-02	1.0000	1619.0	13.85%	4927.0	14.36%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-5.716e-02	1.0000	189.0	1.62%	620.3	1.81%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.672e-02	1.0000	365.0	3.12%	1161.6	3.38%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.562e-02	1.0000	555.0	4.75%	1739.7	5.07%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.517e-02	1.0000	182.0	1.56%	599.9	1.75%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.414e-02	1.0000	855.0	7.31%	2645.3	7.71%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-5.308e-02	1.0000	66.0	0.56%	235.0	0.68%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.274e-02	1.0000	120.0	1.03%	406.9	1.19%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.008e-02	1.0000	20.0	0.17%	82.7	0.24%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-5.002e-02	1.0000	1022.0	8.74%	3150.5	9.18%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-4.967e-02	1.0000	22.0	0.19%	89.1	0.26%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.690e-02	1.0000	12.0	0.10%	54.8	0.16%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-4.669e-02	1.0000	359.0	3.07%	1148.2	3.35%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.567e-02	1.0000	383.0	3.28%	1222.4	3.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.530e-02	1.0000	58.0	0.50%	210.7	0.61%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.379e-02	1.0000	22.0	0.19%	90.3	0.26%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-4.296e-02	1.0000	166.0	1.42%	554.3	1.62%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-4.142e-02	1.0000	406.0	3.47%	1295.6	3.78%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-4.097e-02	1.0000	23.0	0.20%	94.6	0.28%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-3.807e-02	1.0000	665.0	5.69%	2085.4	6.08%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.775e-02	1.0000	54.0	0.46%	199.9	0.58%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.467e-02	1.0000	3.0	0.03%	20.7	0.06%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-3.465e-02	1.0000	296.0	2.53%	962.1	2.80%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-3.382e-02	1.0000	1840.0	15.74%	5615.4	16.36%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-3.368e-02	1.0000	218.0	1.86%	721.6	2.10%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-3.311e-02	1.0000	1139.0	9.74%	3519.5	10.26%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-3.281e-02	1.0000	111.0	0.95%	385.4	1.12%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.210e-02	1.0000	5.0	0.04%	29.9	0.09%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-3.070e-02	1.0000	552.0	4.72%	1749.3	5.10%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-2.969e-02	1.0000	958.0	8.20%	2979.0	8.68%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.705e-02	1.0000	7.0	0.06%	38.4	0.11%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.672e-02	1.0000	3.0	0.03%	21.8	0.06%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-2.558e-02	1.0000	406.0	3.47%	1308.3	3.81%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-2.553e-02	1.0000	157.0	1.34%	535.3	1.56%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.454e-02	1.0000	29.0	0.25%	119.9	0.35%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-2.315e-02	1.0000	766.0	6.55%	2408.2	7.02%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-2.226e-02	1.0000	398.0	3.40%	1287.4	3.75%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-2.106e-02	1.0000	174.0	1.49%	592.0	1.73%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.973e-02	1.0000	167.0	1.43%	572.0	1.67%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.946e-02	1.0000	381.0	3.26%	1238.6	3.61%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.910e-02	1.0000	927.0	7.93%	2902.9	8.46%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.873e-02	1.0000	1429.0	12.22%	4414.6	12.86%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.793e-02	1.0000	431.0	3.69%	1394.2	4.06%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-1.769e-02	1.0000	228.0	1.95%	765.5	2.23%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.574e-02	1.0000	453.0	3.88%	1465.4	4.27%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-1.349e-02	1.0000	2741.0	23.45%	8346.6	24.32%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.306e-02	1.0000	259.0	2.22%	868.9	2.53%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.243e-02	1.0000	10.0	0.09%	54.2	0.16%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.231e-02	1.0000	382.0	3.27%	1252.3	3.65%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.205e-02	1.0000	161.0	1.38%	560.3	1.63%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.156e-02	1.0000	940.0	8.04%	2959.2	8.62%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-1.102e-02	1.0000	890.0	7.61%	2809.7	8.19%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.101e-02	1.0000	68.0	0.58%	259.5	0.76%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.097e-02	1.0000	356.0	3.05%	1174.6	3.42%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-1.088e-02	1.0000	672.0	5.75%	2146.5	6.25%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.065e-02	1.0000	200.0	1.71%	686.9	2.00%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.049e-02	1.0000	320.0	2.74%	1064.0	3.10%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.046e-02	1.0000	17.0	0.15%	82.9	0.24%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-1.024e-02	1.0000	208.0	1.78%	712.7	2.08%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-9.916e-03	1.0000	1223.0	10.46%	3821.0	11.13%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.058e-03	1.0000	52.0	0.44%	208.0	0.61%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-9.046e-03	1.0000	86.0	0.74%	321.2	0.94%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-9.042e-03	1.0000	45.0	0.38%	183.7	0.54%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-8.985e-03	1.0000	955.0	8.17%	3013.3	8.78%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-8.916e-03	1.0000	865.0	7.40%	2740.6	7.99%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-8.563e-03	1.0000	32.0	0.27%	138.3	0.40%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.186e-03	1.0000	246.0	2.10%	836.9	2.44%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-8.018e-03	1.0000	729.0	6.24%	2329.3	6.79%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-7.959e-03	1.0000	128.0	1.09%	460.3	1.34%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-7.942e-03	1.0000	184.0	1.57%	640.2	1.87%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-7.597e-03	1.0000	21.0	0.18%	99.3	0.29%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-6.934e-03	1.0000	316.0	2.70%	1059.1	3.09%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-6.777e-03	1.0000	361.0	3.09%	1200.1	3.50%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.391e-03	1.0000	231.0	1.98%	793.7	2.31%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-5.386e-03	1.0000	316.0	2.70%	1065.0	3.10%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-5.243e-03	1.0000	358.0	3.06%	1196.4	3.49%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.221e-03	1.0000	191.0	1.63%	669.3	1.95%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-5.110e-03	1.0000	43.0	0.37%	181.8	0.53%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-4.925e-03	1.0000	212.0	1.81%	737.8	2.15%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.705e-03	1.0000	10.0	0.09%	59.8	0.17%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.478e-03	1.0000	175.0	1.50%	620.9	1.81%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-4.261e-03	1.0000	380.0	3.25%	1269.5	3.70%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.094e-03	1.0000	4.0	0.03%	33.5	0.10%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-4.005e-03	1.0000	362.0	3.10%	1214.1	3.54%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.803e-03	1.0000	50.0	0.43%	208.3	0.61%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-3.527e-03	1.0000	670.0	5.73%	2171.8	6.33%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.400e-03	1.0000	162.0	1.39%	582.2	1.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.379e-03	1.0000	406.0	3.47%	1355.2	3.95%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-3.054e-03	1.0000	430.0	3.68%	1432.8	4.18%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.989e-03	1.0000	9.0	0.08%	57.0	0.17%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-2.798e-03	1.0000	222.0	1.90%	778.5	2.27%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.603e-03	1.0000	193.0	1.65%	686.1	2.00%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.966e-03	1.0000	92.0	0.79%	358.4	1.04%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.876e-03	1.0000	312.0	2.67%	1071.4	3.12%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.846e-03	1.0000	66.0	0.56%	270.5	0.79%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.663e-03	1.0000	236.0	2.02%	831.0	2.42%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.662e-03	1.0000	98.0	0.84%	380.5	1.11%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-1.539e-03	1.0000	138.0	1.18%	514.1	1.50%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.536e-03	1.0000	34.0	0.29%	158.2	0.46%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-1.508e-03	1.0000	713.0	6.10%	2325.5	6.78%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.152e-03	1.0000	661.0	5.65%	2171.4	6.33%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.104e-03	1.0000	200.0	1.71%	721.2	2.10%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.046e-03	1.0000	201.0	1.72%	725.6	2.11%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.032e-03	1.0000	310.0	2.65%	1075.3	3.13%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.026e-03	1.0000	575.0	4.92%	1907.1	5.56%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.025e-03	1.0000	76.0	0.65%	310.7	0.91%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-9.160e-04	1.0000	42.0	0.36%	191.8	0.56%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-8.600e-04	1.0000	299.0	2.56%	1043.2	3.04%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-7.370e-04	1.0000	688.0	5.89%	2265.3	6.60%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-7.160e-04	1.0000	354.0	3.03%	1222.0	3.56%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.020e-04	1.0000	86.0	0.74%	348.3	1.01%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-7.010e-04	1.0000	427.0	3.65%	1452.7	4.23%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-6.860e-04	1.0000	466.0	3.99%	1575.2	4.59%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-6.210e-04	1.0000	340.0	2.91%	1179.3	3.44%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-6.150e-04	1.0000	263.0	2.25%	933.1	2.72%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-6.130e-04	1.0000	1014.0	8.67%	3273.6	9.54%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-5.880e-04	1.0000	375.0	3.21%	1291.6	3.76%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.500e-04	1.0000	83.0	0.71%	341.0	0.99%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-4.960e-04	1.0000	28.0	0.24%	143.8	0.42%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-4.830e-04	1.0000	384.0	3.28%	1323.4	3.86%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-4.640e-04	1.0000	100.0	0.86%	400.8	1.17%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-3.630e-04	1.0000	551.0	4.71%	1854.2	5.40%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-3.490e-04	1.0000	164.0	1.40%	618.7	1.80%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-3.280e-04	1.0000	566.0	4.84%	1904.0	5.55%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-2.950e-04	1.0000	1404.0	12.01%	4484.4	13.07%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.520e-04	1.0000	43.0	0.37%	204.6	0.60%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-2.480e-04	1.0000	124.0	1.06%	488.8	1.42%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.430e-04	1.0000	621.0	5.31%	2081.8	6.07%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-2.360e-04	1.0000	316.0	2.70%	1118.2	3.26%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.100e-04	1.0000	303.0	2.59%	1078.6	3.14%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.520e-04	1.0000	142.0	1.21%	554.4	1.62%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.380e-04	1.0000	119.0	1.02%	477.2	1.39%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.310e-04	1.0000	286.0	2.45%	1030.8	3.00%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.310e-04	1.0000	45.0	0.38%	216.7	0.63%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.290e-04	1.0000	95.0	0.81%	395.9	1.15%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.250e-04	1.0000	32.0	0.27%	167.8	0.49%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.070e-04	1.0000	56.0	0.48%	258.2	0.75%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.060e-04	1.0000	772.0	6.60%	2569.2	7.49%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-8.900e-05	1.0000	280.0	2.40%	1016.7	2.96%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-7.300e-05	1.0000	606.0	5.18%	2058.2	6.00%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-6.200e-05	1.0000	108.0	0.92%	447.1	1.30%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.000e-05	1.0000	145.0	1.24%	574.8	1.67%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-5.800e-05	1.0000	149.0	1.27%	588.5	1.71%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-5.700e-05	1.0000	524.0	4.48%	1804.6	5.26%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-5.600e-05	1.0000	929.0	7.95%	3070.2	8.95%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.700e-05	1.0000	300.0	2.57%	1090.9	3.18%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-3.200e-05	1.0000	431.0	3.69%	1518.0	4.42%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-3.200e-05	1.0000	383.0	3.28%	1364.4	3.98%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.300e-05	1.0000	93.0	0.80%	403.3	1.18%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.300e-05	1.0000	420.0	3.59%	1488.7	4.34%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.400e-05	1.0000	222.0	1.90%	849.6	2.48%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.300e-05	1.0000	133.0	1.14%	548.9	1.60%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.000e-05	1.0000	120.0	1.03%	505.8	1.47%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.000e-06	1.0000	431.0	3.69%	1539.7	4.49%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-7.000e-06	1.0000	413.0	3.53%	1483.8	4.32%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-3.000e-06	1.0000	1073.0	9.18%	3577.6	10.42%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-3.000e-06	1.0000	286.0	2.45%	1078.9	3.14%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-3.000e-06	1.0000	117.0	1.00%	507.4	1.48%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-2.000e-06	1.0000	445.0	3.81%	1606.8	4.68%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.000e-06	1.0000	399.0	3.41%	1457.4	4.25%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-2.000e-06	1.0000	679.0	5.81%	2355.5	6.86%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.000e-06	1.0000	952.0	8.14%	3214.0	9.37%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.000e-06	1.0000	176.0	1.51%	716.6	2.09%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.000e-06	1.0000	1269.0	10.86%	4205.3	12.25%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.000e-06	1.0000	339.0	2.90%	1272.2	3.71%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.000e-06	1.0000	125.0	1.07%	546.1	1.59%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.000e-06	1.0000	5.0	0.04%	70.5	0.21%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	1041.0	8.91%	3521.4	10.26%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-0.000e+00	1.0000	19.0	0.16%	144.0	0.42%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	1066.0	9.12%	3607.5	10.51%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-0.000e+00	1.0000	86.0	0.74%	413.1	1.20%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-0.000e+00	1.0000	506.0	4.33%	1839.2	5.36%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	305.0	2.61%	1182.2	3.44%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-0.000e+00	1.0000	72.0	0.62%	371.0	1.08%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	235.0	2.01%	954.4	2.78%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	327.0	2.80%	1268.4	3.70%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-0.000e+00	1.0000	523.0	4.47%	1917.0	5.59%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-0.000e+00	1.0000	445.0	3.81%	1663.7	4.85%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-0.000e+00	1.0000	287.0	2.46%	1146.3	3.34%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-0.000e+00	1.0000	624.0	5.34%	2272.2	6.62%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-0.000e+00	1.0000	769.0	6.58%	2744.0	8.00%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-0.000e+00	1.0000	299.0	2.56%	1218.5	3.55%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-0.000e+00	1.0000	137.0	1.17%	649.8	1.89%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-0.000e+00	1.0000	106.0	0.91%	534.6	1.56%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	477.0	4.08%	1827.0	5.32%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	368.0	3.15%	1469.7	4.28%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-0.000e+00	1.0000	139.0	1.19%	679.4	1.98%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-0.000e+00	1.0000	590.0	5.05%	2247.6	6.55%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-0.000e+00	1.0000	136.0	1.16%	685.6	2.00%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-0.000e+00	1.0000	281.0	2.40%	1222.4	3.56%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-0.000e+00	1.0000	90.0	0.77%	524.1	1.53%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-0.000e+00	1.0000	524.0	4.48%	2091.7	6.09%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-0.000e+00	1.0000	203.0	1.74%	968.3	2.82%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-0.000e+00	1.0000	124.0	1.06%	671.5	1.96%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-0.000e+00	1.0000	34.0	0.29%	298.6	0.87%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-0.000e+00	1.0000	116.0	0.99%	654.5	1.91%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-0.000e+00	1.0000	527.0	4.51%	2136.6	6.23%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-0.000e+00	1.0000	204.0	1.75%	1006.8	2.93%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	5.3	0.02%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	0.0	0.00%	25.8	0.08%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	3.2	0.01%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.6	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.8	0.01%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	0.000e+00	1.0000	70.0	0.60%	615.1	1.79%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	0.000e+00	1.0000	734.0	6.28%	3352.2	9.77%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	0.000e+00	1.0000	165.0	1.41%	888.9	2.59%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	0.3	0.00%