Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4428)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 40560)	% of Background Sequences with Motif
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-40	-9.257e+01	0.0000	2213.0	49.98%	16240.2	40.04%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-36	-8.483e+01	0.0000	629.0	14.21%	3409.7	8.41%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-35	-8.188e+01	0.0000	1047.0	23.64%	6617.2	16.31%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-35	-8.114e+01	0.0000	821.0	18.54%	4878.5	12.03%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-34	-7.881e+01	0.0000	1531.0	34.58%	10630.7	26.21%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-26	-6.081e+01	0.0000	678.0	15.31%	4104.3	10.12%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-24	-5.606e+01	0.0000	751.0	16.96%	4746.0	11.70%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-24	-5.598e+01	0.0000	288.0	6.50%	1366.6	3.37%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-23	-5.297e+01	0.0000	466.0	10.52%	2641.2	6.51%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-21	-4.877e+01	0.0000	900.0	20.33%	6072.8	14.97%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-19	-4.519e+01	0.0000	979.0	22.11%	6796.3	16.76%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-16	-3.786e+01	0.0000	1596.0	36.04%	12243.0	30.18%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-15	-3.625e+01	0.0000	1972.0	44.53%	15621.5	38.51%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-15	-3.543e+01	0.0000	429.0	9.69%	2635.8	6.50%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-14	-3.398e+01	0.0000	1575.0	35.57%	12188.2	30.05%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-14	-3.243e+01	0.0000	1358.0	30.67%	10354.7	25.53%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-13	-3.145e+01	0.0000	1011.0	22.83%	7425.9	18.31%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-13	-3.088e+01	0.0000	1728.0	39.02%	13646.7	33.64%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-12	-2.906e+01	0.0000	1177.0	26.58%	8910.2	21.97%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-12	-2.868e+01	0.0000	519.0	11.72%	3465.3	8.54%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-12	-2.862e+01	0.0000	2268.0	51.22%	18588.2	45.83%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-12	-2.800e+01	0.0000	771.0	17.41%	5524.1	13.62%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-10	-2.436e+01	0.0000	2189.0	49.44%	18053.1	44.51%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-10	-2.433e+01	0.0000	1353.0	30.56%	10603.4	26.14%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-10	-2.329e+01	0.0000	148.0	3.34%	765.4	1.89%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-10	-2.312e+01	0.0000	731.0	16.51%	5335.9	13.16%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-9	-2.270e+01	0.0000	1297.0	29.29%	10180.6	25.10%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-9	-2.183e+01	0.0000	891.0	20.12%	6721.4	16.57%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-9	-2.143e+01	0.0000	816.0	18.43%	6101.2	15.04%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-9	-2.136e+01	0.0000	970.0	21.91%	7410.8	18.27%
SeqBias: CA-repeat	CACACACACA	1e-9	-2.121e+01	0.0000	1960.0	44.26%	16126.6	39.76%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-8	-2.049e+01	0.0000	1187.0	26.81%	9313.8	22.96%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-8	-2.026e+01	0.0000	1420.0	32.07%	11360.9	28.01%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-8	-1.973e+01	0.0000	496.0	11.20%	3500.1	8.63%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-8	-1.949e+01	0.0000	569.0	12.85%	4104.7	10.12%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-8	-1.919e+01	0.0000	1460.0	32.97%	11761.2	29.00%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-7	-1.743e+01	0.0000	2245.0	50.70%	18904.7	46.61%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-7	-1.678e+01	0.0000	513.0	11.59%	3725.3	9.18%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-7	-1.674e+01	0.0000	461.0	10.41%	3299.6	8.13%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e-7	-1.673e+01	0.0000	666.0	15.04%	5001.4	12.33%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-7	-1.664e+01	0.0000	428.0	9.67%	3033.6	7.48%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-7	-1.639e+01	0.0000	592.0	13.37%	4393.7	10.83%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-7	-1.637e+01	0.0000	1086.0	24.53%	8613.4	21.24%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-7	-1.629e+01	0.0000	288.0	6.50%	1921.6	4.74%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-7	-1.625e+01	0.0000	296.0	6.68%	1985.4	4.89%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-6	-1.571e+01	0.0000	507.0	11.45%	3709.2	9.14%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-6	-1.503e+01	0.0000	824.0	18.61%	6409.5	15.80%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-6	-1.497e+01	0.0000	467.0	10.55%	3402.8	8.39%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-6	-1.470e+01	0.0000	778.0	17.57%	6029.1	14.86%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-6	-1.425e+01	0.0000	1983.0	44.78%	16702.5	41.18%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-6	-1.423e+01	0.0000	1134.0	25.61%	9133.5	22.52%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-6	-1.419e+01	0.0000	491.0	11.09%	3626.2	8.94%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-6	-1.401e+01	0.0000	1170.0	26.42%	9460.8	23.32%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-6	-1.398e+01	0.0000	783.0	17.68%	6102.0	15.04%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-5	-1.376e+01	0.0000	939.0	21.21%	7457.5	18.39%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-5	-1.353e+01	0.0000	471.0	10.64%	3482.4	8.59%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-5	-1.312e+01	0.0000	1587.0	35.84%	13205.4	32.56%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-5	-1.290e+01	0.0000	910.0	20.55%	7246.9	17.87%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-5	-1.271e+01	0.0001	715.0	16.15%	5574.0	13.74%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-5	-1.256e+01	0.0001	1253.0	28.30%	10268.7	25.32%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e-5	-1.241e+01	0.0001	211.0	4.77%	1405.1	3.46%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-5	-1.209e+01	0.0001	98.0	2.21%	556.0	1.37%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-5	-1.205e+01	0.0001	960.0	21.68%	7723.1	19.04%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-4	-1.135e+01	0.0002	1125.0	25.41%	9208.0	22.70%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-4	-1.116e+01	0.0002	276.0	6.23%	1955.1	4.82%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-4	-1.010e+01	0.0006	372.0	8.40%	2778.5	6.85%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-4	-1.006e+01	0.0006	2070.0	46.75%	17767.0	43.80%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-4	-9.868e+00	0.0008	870.0	19.65%	7054.6	17.39%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-4	-9.862e+00	0.0008	1163.0	26.26%	9631.4	23.75%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-4	-9.848e+00	0.0008	909.0	20.53%	7396.8	18.24%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-4	-9.690e+00	0.0009	378.0	8.54%	2843.1	7.01%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-4	-9.633e+00	0.0009	1630.0	36.81%	13815.9	34.06%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-4	-9.629e+00	0.0009	860.0	19.42%	6980.0	17.21%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e-4	-9.558e+00	0.0010	381.0	8.60%	2873.8	7.09%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-4	-9.553e+00	0.0010	399.0	9.01%	3024.3	7.46%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-4	-9.503e+00	0.0010	744.0	16.80%	5977.1	14.74%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-4	-9.452e+00	0.0010	524.0	11.83%	4087.0	10.08%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-4	-9.281e+00	0.0012	821.0	18.54%	6659.3	16.42%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-4	-9.261e+00	0.0012	476.0	10.75%	3686.0	9.09%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-9.201e+00	0.0013	439.0	9.91%	3375.1	8.32%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-3	-9.183e+00	0.0013	695.0	15.70%	5569.4	13.73%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-3	-9.162e+00	0.0013	165.0	3.73%	1119.7	2.76%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-3	-9.112e+00	0.0013	612.0	13.82%	4856.2	11.97%
SeqBias: C/A-bias	MMMMMMMMMM	1e-3	-9.058e+00	0.0014	4421.0	99.84%	40352.7	99.49%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-3	-8.686e+00	0.0020	283.0	6.39%	2089.8	5.15%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-3	-8.653e+00	0.0020	1303.0	29.43%	10955.9	27.01%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-8.360e+00	0.0027	275.0	6.21%	2034.9	5.02%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-3	-8.238e+00	0.0030	50.0	1.13%	267.3	0.66%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-3	-8.226e+00	0.0030	801.0	18.09%	6546.0	16.14%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-3	-8.153e+00	0.0032	233.0	5.26%	1695.8	4.18%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-3	-8.097e+00	0.0034	804.0	18.16%	6579.7	16.22%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-7.956e+00	0.0038	129.0	2.91%	864.3	2.13%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-3	-7.906e+00	0.0040	417.0	9.42%	3244.0	8.00%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-3	-7.757e+00	0.0046	361.0	8.15%	2776.3	6.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.528e+00	0.0057	302.0	6.82%	2289.7	5.64%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e-3	-7.491e+00	0.0058	388.0	8.76%	3016.7	7.44%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-7.420e+00	0.0062	698.0	15.76%	5693.6	14.04%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.383e+00	0.0064	791.0	17.86%	6509.5	16.05%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-3	-7.324e+00	0.0067	1427.0	32.23%	12164.3	29.99%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-3	-7.294e+00	0.0068	678.0	15.31%	5526.2	13.62%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-3	-7.264e+00	0.0070	670.0	15.13%	5458.3	13.46%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-7.171e+00	0.0076	504.0	11.38%	4024.3	9.92%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-3	-7.032e+00	0.0086	14.0	0.32%	47.7	0.12%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-3	-7.014e+00	0.0087	728.0	16.44%	5980.6	14.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-6.909e+00	0.0096	582.0	13.14%	4713.7	11.62%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-6.764e+00	0.0110	125.0	2.82%	862.0	2.13%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-2	-6.672e+00	0.0119	957.0	21.61%	8021.2	19.78%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-2	-6.601e+00	0.0127	194.0	4.38%	1425.6	3.51%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-2	-6.556e+00	0.0131	44.0	0.99%	246.5	0.61%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-2	-6.489e+00	0.0139	644.0	14.54%	5278.8	13.01%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-2	-6.392e+00	0.0152	733.0	16.55%	6064.5	14.95%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-6.344e+00	0.0158	763.0	17.23%	6331.3	15.61%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-2	-6.307e+00	0.0162	219.0	4.95%	1642.7	4.05%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-2	-6.278e+00	0.0166	722.0	16.31%	5976.0	14.73%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-2	-6.255e+00	0.0168	1066.0	24.07%	9021.0	22.24%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-6.227e+00	0.0171	94.0	2.12%	629.5	1.55%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-2	-6.202e+00	0.0174	1027.0	23.19%	8678.3	21.40%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-2	-6.133e+00	0.0185	798.0	18.02%	6654.9	16.41%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-2	-6.059e+00	0.0198	238.0	5.37%	1810.7	4.46%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-2	-6.048e+00	0.0198	484.0	10.93%	3912.6	9.65%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-5.994e+00	0.0207	1295.0	29.25%	11090.1	27.34%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.982e+00	0.0208	568.0	12.83%	4646.4	11.46%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-2	-5.909e+00	0.0222	897.0	20.26%	7546.7	18.61%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-2	-5.892e+00	0.0224	671.0	15.15%	5553.7	13.69%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-5.891e+00	0.0224	193.0	4.36%	1441.4	3.55%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-2	-5.868e+00	0.0226	4421.0	99.84%	40395.9	99.59%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.687e+00	0.0269	342.0	7.72%	2708.7	6.68%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-2	-5.552e+00	0.0305	412.0	9.30%	3317.0	8.18%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-5.552e+00	0.0305	308.0	6.96%	2424.9	5.98%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-2	-5.503e+00	0.0315	847.0	19.13%	7134.0	17.59%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-2	-5.450e+00	0.0330	344.0	7.77%	2737.6	6.75%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-2	-5.376e+00	0.0353	392.0	8.85%	3154.5	7.78%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-2	-5.251e+00	0.0397	639.0	14.43%	5316.1	13.11%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-2	-5.221e+00	0.0405	388.0	8.76%	3128.0	7.71%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e-2	-5.163e+00	0.0426	173.0	3.91%	1301.8	3.21%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-2	-5.133e+00	0.0436	842.0	19.02%	7119.5	17.55%
SeqBias: GA-repeat	GAGAGAGAGA	1e-2	-5.098e+00	0.0448	2964.0	66.94%	26420.9	65.14%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-5.067e+00	0.0460	650.0	14.68%	5426.9	13.38%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-5.064e+00	0.0460	294.0	6.64%	2328.5	5.74%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-2	-5.015e+00	0.0477	233.0	5.26%	1811.4	4.47%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-2	-4.969e+00	0.0496	312.0	7.05%	2487.3	6.13%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-2	-4.963e+00	0.0496	664.0	15.00%	5557.7	13.70%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-2	-4.927e+00	0.0510	356.0	8.04%	2868.7	7.07%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-2	-4.916e+00	0.0512	266.0	6.01%	2096.4	5.17%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-4.914e+00	0.0512	859.0	19.40%	7288.7	17.97%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-2	-4.876e+00	0.0526	402.0	9.08%	3269.8	8.06%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-2	-4.750e+00	0.0592	318.0	7.18%	2550.4	6.29%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-4.488e+00	0.0764	327.0	7.38%	2642.3	6.51%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.479e+00	0.0766	175.0	3.95%	1344.7	3.32%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-1	-4.383e+00	0.0837	826.0	18.65%	7040.1	17.36%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-4.382e+00	0.0837	488.0	11.02%	4051.4	9.99%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-1	-4.269e+00	0.0926	93.0	2.10%	671.9	1.66%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-4.196e+00	0.0990	98.0	2.21%	715.0	1.76%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-4.156e+00	0.1023	819.0	18.50%	6998.1	17.25%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-1	-4.126e+00	0.1048	155.0	3.50%	1190.9	2.94%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-1	-3.979e+00	0.1207	1089.0	24.59%	9432.1	23.25%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-1	-3.978e+00	0.1207	503.0	11.36%	4212.8	10.39%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-3.917e+00	0.1267	39.0	0.88%	250.9	0.62%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-1	-3.897e+00	0.1285	879.0	19.85%	7558.9	18.64%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-1	-3.857e+00	0.1328	830.0	18.74%	7124.2	17.56%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.729e+00	0.1500	230.0	5.19%	1847.7	4.56%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-3.663e+00	0.1593	28.0	0.63%	171.9	0.42%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.624e+00	0.1647	306.0	6.91%	2511.9	6.19%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-3.524e+00	0.1808	4116.0	92.95%	37392.8	92.19%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-1	-3.523e+00	0.1808	344.0	7.77%	2849.1	7.02%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e-1	-3.480e+00	0.1867	783.0	17.68%	6741.5	16.62%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e-1	-3.464e+00	0.1885	70.0	1.58%	507.1	1.25%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-1	-3.460e+00	0.1885	1345.0	30.37%	11799.6	29.09%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.397e+00	0.1992	617.0	13.93%	5269.8	12.99%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.390e+00	0.1995	768.0	17.34%	6616.5	16.31%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.385e+00	0.1995	241.0	5.44%	1961.0	4.83%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-1	-3.367e+00	0.2017	422.0	9.53%	3545.6	8.74%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-3.358e+00	0.2024	96.0	2.17%	725.7	1.79%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.350e+00	0.2028	640.0	14.45%	5478.5	13.51%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.334e+00	0.2037	43.0	0.97%	293.9	0.72%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.334e+00	0.2037	43.0	0.97%	293.9	0.72%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-3.318e+00	0.2059	125.0	2.82%	970.7	2.39%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-1	-3.309e+00	0.2066	365.0	8.24%	3048.2	7.52%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-1	-3.303e+00	0.2066	99.0	2.24%	752.1	1.85%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.298e+00	0.2066	215.0	4.86%	1741.6	4.29%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e-1	-3.139e+00	0.2408	19.0	0.43%	112.4	0.28%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-1	-3.124e+00	0.2431	703.0	15.88%	6062.5	14.95%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.116e+00	0.2438	303.0	6.84%	2518.7	6.21%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-3.110e+00	0.2438	211.0	4.77%	1717.3	4.23%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-3.097e+00	0.2456	476.0	10.75%	4044.3	9.97%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.076e+00	0.2495	361.0	8.15%	3030.5	7.47%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-1	-3.025e+00	0.2611	105.0	2.37%	813.9	2.01%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-1	-3.023e+00	0.2611	598.0	13.50%	5135.3	12.66%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-1	-2.968e+00	0.2737	603.0	13.62%	5185.1	12.78%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-1	-2.967e+00	0.2737	479.0	10.82%	4082.4	10.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.962e+00	0.2737	216.0	4.88%	1769.1	4.36%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.950e+00	0.2743	235.0	5.31%	1935.2	4.77%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-2.940e+00	0.2756	358.0	8.08%	3014.7	7.43%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-2.939e+00	0.2756	275.0	6.21%	2285.5	5.63%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-1	-2.919e+00	0.2786	481.0	10.86%	4104.7	10.12%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-1	-2.898e+00	0.2829	274.0	6.19%	2279.7	5.62%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-2.890e+00	0.2838	1198.0	27.06%	10542.3	25.99%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-1	-2.868e+00	0.2886	135.0	3.05%	1075.1	2.65%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.833e+00	0.2973	892.0	20.14%	7789.3	19.20%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-2.810e+00	0.3028	365.0	8.24%	3086.3	7.61%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-1	-2.792e+00	0.3068	468.0	10.57%	4000.5	9.86%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-1	-2.784e+00	0.3076	1093.0	24.68%	9607.0	23.69%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.779e+00	0.3076	178.0	4.02%	1450.5	3.58%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.763e+00	0.3111	140.0	3.16%	1123.9	2.77%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e-1	-2.739e+00	0.3173	182.0	4.11%	1487.7	3.67%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-2.712e+00	0.3243	522.0	11.79%	4488.8	11.07%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-1	-2.710e+00	0.3243	438.0	9.89%	3741.3	9.22%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-1	-2.625e+00	0.3503	542.0	12.24%	4675.3	11.53%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-1	-2.602e+00	0.3568	1380.0	31.17%	12231.7	30.16%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-2.584e+00	0.3616	196.0	4.43%	1618.4	3.99%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-2.562e+00	0.3679	264.0	5.96%	2215.7	5.46%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-1	-2.542e+00	0.3735	174.0	3.93%	1429.1	3.52%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e-1	-2.517e+00	0.3811	28.0	0.63%	192.6	0.47%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-1	-2.511e+00	0.3817	396.0	8.94%	3386.7	8.35%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.495e+00	0.3861	121.0	2.73%	973.6	2.40%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-2.492e+00	0.3861	7.0	0.16%	34.1	0.08%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-2.492e+00	0.3861	7.0	0.16%	34.8	0.09%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-1	-2.484e+00	0.3861	788.0	17.80%	6896.4	17.00%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-2.478e+00	0.3861	433.0	9.78%	3718.2	9.17%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-1	-2.477e+00	0.3861	93.0	2.10%	734.3	1.81%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.473e+00	0.3861	220.0	4.97%	1835.8	4.53%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-1	-2.456e+00	0.3889	51.0	1.15%	381.0	0.94%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-1	-2.448e+00	0.3901	144.0	3.25%	1174.6	2.90%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.437e+00	0.3928	422.0	9.53%	3624.6	8.94%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.416e+00	0.3993	82.0	1.85%	643.8	1.59%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-1	-2.415e+00	0.3993	286.0	6.46%	2420.0	5.97%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.407e+00	0.3993	256.0	5.78%	2156.9	5.32%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.405e+00	0.3993	77.0	1.74%	601.8	1.48%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-1	-2.345e+00	0.4212	552.0	12.47%	4794.1	11.82%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.338e+00	0.4220	208.0	4.70%	1739.3	4.29%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-2.334e+00	0.4220	62.0	1.40%	477.8	1.18%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-2.324e+00	0.4246	457.0	10.32%	3947.4	9.73%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-1	-2.318e+00	0.4253	416.0	9.39%	3583.0	8.83%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-2.294e+00	0.4337	894.0	20.19%	7876.6	19.42%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.283e+00	0.4366	55.0	1.24%	420.7	1.04%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.279e+00	0.4366	110.0	2.48%	889.6	2.19%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-2.252e+00	0.4467	562.0	12.69%	4894.1	12.07%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.251e+00	0.4467	11.0	0.25%	65.0	0.16%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.242e+00	0.4472	202.0	4.56%	1694.0	4.18%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.227e+00	0.4521	509.0	11.50%	4422.3	10.90%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-2.222e+00	0.4524	14.0	0.32%	88.3	0.22%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.206e+00	0.4578	84.0	1.90%	669.5	1.65%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-2.191e+00	0.4629	718.0	16.21%	6303.9	15.54%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.184e+00	0.4643	84.0	1.90%	670.0	1.65%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.183e+00	0.4643	43.0	0.97%	323.3	0.80%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-2.150e+00	0.4765	1112.0	25.11%	9869.6	24.33%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.145e+00	0.4769	338.0	7.63%	2904.2	7.16%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-2.131e+00	0.4816	411.0	9.28%	3556.5	8.77%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.128e+00	0.4816	431.0	9.73%	3735.6	9.21%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-2.118e+00	0.4840	137.0	3.09%	1132.3	2.79%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.096e+00	0.4926	245.0	5.53%	2083.9	5.14%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-2.090e+00	0.4938	2063.0	46.59%	18541.6	45.71%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-2.087e+00	0.4938	219.0	4.95%	1854.7	4.57%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-2.013e+00	0.5293	581.0	13.12%	5093.5	12.56%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-2.011e+00	0.5293	629.0	14.21%	5525.1	13.62%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.999e+00	0.5322	38.0	0.86%	287.6	0.71%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.990e+00	0.5349	222.0	5.01%	1888.3	4.66%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.977e+00	0.5401	259.0	5.85%	2217.2	5.47%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.965e+00	0.5443	74.0	1.67%	594.0	1.46%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.964e+00	0.5443	2.0	0.05%	6.7	0.02%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.933e+00	0.5576	32.0	0.72%	239.4	0.59%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.932e+00	0.5576	296.0	6.68%	2550.1	6.29%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.923e+00	0.5593	391.0	8.83%	3399.3	8.38%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.921e+00	0.5593	74.0	1.67%	596.2	1.47%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.919e+00	0.5593	268.0	6.05%	2302.9	5.68%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.919e+00	0.5593	91.0	2.06%	743.0	1.83%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-1.901e+00	0.5629	190.0	4.29%	1613.0	3.98%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.898e+00	0.5629	115.0	2.60%	953.4	2.35%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.890e+00	0.5650	319.0	7.20%	2759.3	6.80%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.883e+00	0.5666	358.0	8.08%	3108.4	7.66%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.870e+00	0.5720	134.0	3.03%	1121.5	2.76%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.861e+00	0.5749	434.0	9.80%	3791.8	9.35%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.846e+00	0.5816	236.0	5.33%	2024.7	4.99%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.843e+00	0.5816	193.0	4.36%	1643.8	4.05%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.823e+00	0.5911	388.0	8.76%	3383.4	8.34%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.802e+00	0.6011	70.0	1.58%	567.3	1.40%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-1.783e+00	0.6107	214.0	4.83%	1834.5	4.52%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.759e+00	0.6234	121.0	2.73%	1014.9	2.50%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.756e+00	0.6234	1912.0	43.18%	17225.8	42.47%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-1.738e+00	0.6316	482.0	10.89%	4237.6	10.45%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.733e+00	0.6327	207.0	4.67%	1776.6	4.38%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.731e+00	0.6327	590.0	13.32%	5211.7	12.85%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.727e+00	0.6327	136.0	3.07%	1148.5	2.83%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.720e+00	0.6340	176.0	3.97%	1502.8	3.70%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.691e+00	0.6506	271.0	6.12%	2350.6	5.80%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.689e+00	0.6506	548.0	12.38%	4838.1	11.93%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.683e+00	0.6514	347.0	7.84%	3031.1	7.47%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.662e+00	0.6626	145.0	3.27%	1232.3	3.04%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.657e+00	0.6638	261.0	5.89%	2264.5	5.58%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.642e+00	0.6713	57.0	1.29%	462.3	1.14%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.641e+00	0.6713	25.0	0.56%	189.2	0.47%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.615e+00	0.6853	379.0	8.56%	3326.8	8.20%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.604e+00	0.6901	404.0	9.12%	3552.7	8.76%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.604e+00	0.6901	48.0	1.08%	386.6	0.95%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.604e+00	0.6901	414.0	9.35%	3642.7	8.98%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.604e+00	0.6901	516.0	11.65%	4561.0	11.24%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-1.601e+00	0.6901	181.0	4.09%	1556.0	3.84%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.600e+00	0.6901	255.0	5.76%	2216.9	5.47%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.592e+00	0.6901	289.0	6.53%	2521.2	6.22%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-1.584e+00	0.6901	206.0	4.65%	1780.1	4.39%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.583e+00	0.6901	818.0	18.47%	7296.2	17.99%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.578e+00	0.6901	258.0	5.83%	2246.0	5.54%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.563e+00	0.6959	7.0	0.16%	44.7	0.11%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.563e+00	0.6959	59.0	1.33%	483.0	1.19%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.562e+00	0.6959	332.0	7.50%	2910.9	7.18%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.561e+00	0.6959	207.0	4.67%	1792.0	4.42%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.548e+00	0.6969	392.0	8.85%	3451.4	8.51%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.547e+00	0.6969	187.0	4.22%	1614.1	3.98%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.525e+00	0.7083	118.0	2.66%	1003.0	2.47%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-1.523e+00	0.7083	91.0	2.06%	765.2	1.89%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.515e+00	0.7110	210.0	4.74%	1822.9	4.49%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.510e+00	0.7125	6.0	0.14%	37.4	0.09%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.488e+00	0.7260	203.0	4.58%	1762.2	4.34%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.487e+00	0.7260	48.0	1.08%	391.2	0.96%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-1.483e+00	0.7260	1482.0	33.47%	13356.9	32.93%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.475e+00	0.7281	108.0	2.44%	918.2	2.26%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.474e+00	0.7281	60.0	1.36%	496.7	1.22%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.472e+00	0.7281	25.0	0.56%	194.6	0.48%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.471e+00	0.7281	293.0	6.62%	2570.9	6.34%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.468e+00	0.7281	218.0	4.92%	1898.6	4.68%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.453e+00	0.7330	390.0	8.81%	3445.4	8.49%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.450e+00	0.7332	181.0	4.09%	1569.4	3.87%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.434e+00	0.7425	204.0	4.61%	1776.7	4.38%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.432e+00	0.7425	115.0	2.60%	983.9	2.43%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.428e+00	0.7425	134.0	3.03%	1152.5	2.84%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.417e+00	0.7479	620.0	14.00%	5529.4	13.63%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.414e+00	0.7485	383.0	8.65%	3387.2	8.35%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.410e+00	0.7491	161.0	3.64%	1394.0	3.44%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.405e+00	0.7502	142.0	3.21%	1225.8	3.02%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-1.401e+00	0.7510	135.0	3.05%	1163.8	2.87%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.373e+00	0.7701	464.0	10.48%	4124.7	10.17%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.371e+00	0.7701	82.0	1.85%	695.5	1.71%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.365e+00	0.7718	1075.0	24.28%	9672.4	23.85%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.358e+00	0.7745	153.0	3.46%	1327.7	3.27%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.353e+00	0.7760	509.0	11.50%	4534.7	11.18%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e0	-1.348e+00	0.7778	42.0	0.95%	345.9	0.85%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.342e+00	0.7801	21.0	0.47%	164.1	0.40%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e0	-1.337e+00	0.7816	378.0	8.54%	3353.0	8.27%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.320e+00	0.7927	36.0	0.81%	294.8	0.73%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.319e+00	0.7927	71.0	1.60%	601.5	1.48%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.294e+00	0.8090	626.0	14.14%	5604.8	13.82%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.290e+00	0.8100	83.0	1.87%	709.2	1.75%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.290e+00	0.8100	18.0	0.41%	140.9	0.35%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.283e+00	0.8103	50.0	1.13%	418.8	1.03%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.281e+00	0.8103	42.0	0.95%	348.3	0.86%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.279e+00	0.8103	250.0	5.65%	2205.3	5.44%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.274e+00	0.8106	289.0	6.53%	2557.2	6.30%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.269e+00	0.8124	474.0	10.70%	4230.4	10.43%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.269e+00	0.8124	455.0	10.28%	4058.8	10.01%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.261e+00	0.8145	367.0	8.29%	3263.5	8.05%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.250e+00	0.8215	535.0	12.08%	4786.0	11.80%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.235e+00	0.8310	571.0	12.90%	5115.9	12.61%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-1.229e+00	0.8338	958.0	21.64%	8635.7	21.29%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.223e+00	0.8366	273.0	6.17%	2419.5	5.97%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.218e+00	0.8379	12.0	0.27%	91.8	0.23%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.218e+00	0.8379	240.0	5.42%	2122.8	5.23%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.213e+00	0.8379	24.0	0.54%	194.0	0.48%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-1.211e+00	0.8379	515.0	11.63%	4611.8	11.37%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.207e+00	0.8381	560.0	12.65%	5020.9	12.38%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-1.206e+00	0.8381	765.0	17.28%	6883.4	16.97%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.188e+00	0.8497	176.0	3.97%	1549.5	3.82%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.186e+00	0.8497	374.0	8.45%	3337.2	8.23%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.176e+00	0.8552	61.0	1.38%	521.6	1.29%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e0	-1.165e+00	0.8620	356.0	8.04%	3177.8	7.83%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.157e+00	0.8663	11.0	0.25%	84.5	0.21%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.151e+00	0.8693	138.0	3.12%	1211.6	2.99%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.144e+00	0.8730	338.0	7.63%	3017.1	7.44%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.143e+00	0.8730	296.0	6.68%	2637.2	6.50%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.142e+00	0.8730	14.0	0.32%	110.9	0.27%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.136e+00	0.8732	113.0	2.55%	988.9	2.44%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.128e+00	0.8773	157.0	3.55%	1384.1	3.41%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.126e+00	0.8773	290.0	6.55%	2585.9	6.38%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.122e+00	0.8782	119.0	2.69%	1044.0	2.57%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.117e+00	0.8803	240.0	5.42%	2134.0	5.26%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.091e+00	0.9011	22.0	0.50%	181.5	0.45%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.079e+00	0.9094	973.0	21.97%	8805.0	21.71%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.067e+00	0.9180	599.0	13.53%	5400.8	13.32%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.064e+00	0.9185	382.0	8.63%	3428.7	8.45%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.050e+00	0.9290	46.0	1.04%	395.6	0.98%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-1.049e+00	0.9290	185.0	4.18%	1645.3	4.06%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.039e+00	0.9342	945.0	21.34%	8560.0	21.10%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-1.032e+00	0.9386	29.0	0.65%	245.7	0.61%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.032e+00	0.9386	106.0	2.39%	935.0	2.31%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.023e+00	0.9415	7.0	0.16%	53.3	0.13%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.013e+00	0.9489	796.0	17.98%	7206.5	17.77%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.006e+00	0.9526	4.0	0.09%	28.5	0.07%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.004e+00	0.9526	604.0	13.64%	5458.6	13.46%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.003e+00	0.9526	247.0	5.58%	2212.2	5.45%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.957e-01	0.9555	88.0	1.99%	775.8	1.91%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-9.938e-01	0.9555	333.0	7.52%	2994.7	7.38%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-9.844e-01	0.9614	42.0	0.95%	363.7	0.90%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-9.836e-01	0.9614	594.0	13.41%	5371.9	13.24%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-9.828e-01	0.9614	154.0	3.48%	1372.3	3.38%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-9.793e-01	0.9614	24.0	0.54%	203.2	0.50%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-9.771e-01	0.9614	591.0	13.35%	5345.4	13.18%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-9.762e-01	0.9614	2.0	0.05%	12.5	0.03%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-9.590e-01	0.9713	55.0	1.24%	481.2	1.19%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-9.551e-01	0.9726	12.0	0.27%	98.2	0.24%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-9.310e-01	0.9938	73.0	1.65%	645.9	1.59%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.307e-01	0.9938	25.0	0.56%	214.0	0.53%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-9.290e-01	0.9938	61.0	1.38%	537.7	1.33%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-9.184e-01	0.9988	505.0	11.40%	4573.6	11.28%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-9.181e-01	0.9988	4424.0	99.91%	40512.5	99.88%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-9.101e-01	1.0000	237.0	5.35%	2134.1	5.26%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-9.068e-01	1.0000	133.0	3.00%	1190.5	2.94%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.988e-01	1.0000	39.0	0.88%	341.8	0.84%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-8.984e-01	1.0000	402.0	9.08%	3638.9	8.97%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-8.870e-01	1.0000	677.0	15.29%	6149.1	15.16%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.827e-01	1.0000	125.0	2.82%	1120.4	2.76%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-8.824e-01	1.0000	45.0	1.02%	396.0	0.98%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-8.782e-01	1.0000	370.0	8.36%	3350.1	8.26%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.691e-01	1.0000	51.0	1.15%	451.2	1.11%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-8.628e-01	1.0000	200.0	4.52%	1804.3	4.45%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.601e-01	1.0000	132.0	2.98%	1187.0	2.93%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.491e-01	1.0000	343.0	7.75%	3109.0	7.67%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-8.398e-01	1.0000	321.0	7.25%	2910.2	7.17%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-8.313e-01	1.0000	309.0	6.98%	2802.5	6.91%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.067e-01	1.0000	59.0	1.33%	528.1	1.30%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-8.021e-01	1.0000	293.0	6.62%	2661.1	6.56%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.977e-01	1.0000	356.0	8.04%	3237.9	7.98%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.897e-01	1.0000	569.0	12.85%	5185.2	12.78%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-7.836e-01	1.0000	329.0	7.43%	2993.9	7.38%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.803e-01	1.0000	105.0	2.37%	949.7	2.34%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.789e-01	1.0000	225.0	5.08%	2044.6	5.04%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-7.788e-01	1.0000	154.0	3.48%	1396.1	3.44%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-7.651e-01	1.0000	418.0	9.44%	3810.9	9.40%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.642e-01	1.0000	46.0	1.04%	413.7	1.02%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-7.632e-01	1.0000	757.0	17.10%	6911.3	17.04%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.622e-01	1.0000	23.0	0.52%	204.1	0.50%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-7.583e-01	1.0000	42.0	0.95%	377.1	0.93%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.446e-01	1.0000	13.0	0.29%	114.2	0.28%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-7.429e-01	1.0000	681.0	15.38%	6221.9	15.34%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-7.404e-01	1.0000	11.0	0.25%	96.3	0.24%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-7.334e-01	1.0000	36.0	0.81%	324.7	0.80%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-7.330e-01	1.0000	762.0	17.21%	6965.9	17.17%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.118e-01	1.0000	33.0	0.75%	298.3	0.74%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-7.091e-01	1.0000	66.0	1.49%	600.5	1.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.051e-01	1.0000	9.0	0.20%	79.7	0.20%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-7.028e-01	1.0000	613.0	13.84%	5609.6	13.83%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-6.954e-01	1.0000	292.0	6.59%	2671.7	6.59%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-6.843e-01	1.0000	5.0	0.11%	43.9	0.11%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-6.833e-01	1.0000	1098.0	24.80%	10057.9	24.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.807e-01	1.0000	177.0	4.00%	1620.9	4.00%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-6.748e-01	1.0000	112.0	2.53%	1025.2	2.53%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.710e-01	1.0000	63.0	1.42%	576.6	1.42%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-6.681e-01	1.0000	23.0	0.52%	209.5	0.52%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-6.579e-01	1.0000	1205.0	27.21%	11046.9	27.24%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.579e-01	1.0000	320.0	7.23%	2936.0	7.24%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-6.571e-01	1.0000	35.0	0.79%	320.6	0.79%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-6.543e-01	1.0000	553.0	12.49%	5072.5	12.51%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-6.536e-01	1.0000	10.0	0.23%	90.7	0.22%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-6.509e-01	1.0000	85.0	1.92%	780.2	1.92%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.282e-01	1.0000	438.0	9.89%	4024.6	9.92%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.186e-01	1.0000	36.0	0.81%	332.8	0.82%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.170e-01	1.0000	12.0	0.27%	110.7	0.27%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-6.167e-01	1.0000	3.0	0.07%	26.6	0.07%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-6.124e-01	1.0000	93.0	2.10%	858.9	2.12%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.099e-01	1.0000	11.0	0.25%	101.6	0.25%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.088e-01	1.0000	33.0	0.75%	305.1	0.75%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-6.065e-01	1.0000	85.0	1.92%	785.9	1.94%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.056e-01	1.0000	385.0	8.69%	3543.4	8.74%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.971e-01	1.0000	623.0	14.07%	5730.6	14.13%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-5.916e-01	1.0000	625.0	14.11%	5751.0	14.18%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-5.906e-01	1.0000	190.0	4.29%	1754.5	4.33%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-5.898e-01	1.0000	47.0	1.06%	436.8	1.08%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-5.880e-01	1.0000	1154.0	26.06%	10604.6	26.14%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-5.854e-01	1.0000	354.0	7.99%	3263.5	8.05%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.742e-01	1.0000	18.0	0.41%	168.6	0.42%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-5.727e-01	1.0000	491.0	11.09%	4525.2	11.16%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.708e-01	1.0000	123.0	2.78%	1140.3	2.81%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-5.679e-01	1.0000	9.0	0.20%	84.5	0.21%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-5.640e-01	1.0000	57.0	1.29%	531.3	1.31%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-5.620e-01	1.0000	242.0	5.47%	2238.5	5.52%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.619e-01	1.0000	674.0	15.22%	6209.7	15.31%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-5.555e-01	1.0000	135.0	3.05%	1253.6	3.09%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.541e-01	1.0000	10.0	0.23%	94.9	0.23%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.463e-01	1.0000	562.0	12.69%	5185.6	12.78%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.451e-01	1.0000	40.0	0.90%	375.9	0.93%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.416e-01	1.0000	11.0	0.25%	104.8	0.26%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-5.408e-01	1.0000	5.0	0.11%	47.6	0.12%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.404e-01	1.0000	1.0	0.02%	8.4	0.02%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.390e-01	1.0000	96.0	2.17%	895.4	2.21%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-5.323e-01	1.0000	639.0	14.43%	5897.3	14.54%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-5.293e-01	1.0000	294.0	6.64%	2724.9	6.72%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-5.227e-01	1.0000	450.0	10.16%	4162.6	10.26%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-5.107e-01	1.0000	230.0	5.19%	2138.1	5.27%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-5.095e-01	1.0000	10.0	0.23%	96.1	0.24%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-5.094e-01	1.0000	85.0	1.92%	797.7	1.97%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-5.076e-01	1.0000	271.0	6.12%	2517.8	6.21%
Tal1	CATCTG	1e0	-5.062e-01	1.0000	375.0	8.47%	3476.7	8.57%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-5.054e-01	1.0000	131.0	2.96%	1225.0	3.02%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-5.036e-01	1.0000	931.0	21.03%	8590.5	21.18%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.974e-01	1.0000	9.0	0.20%	87.2	0.22%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-4.898e-01	1.0000	27.0	0.61%	258.1	0.64%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.882e-01	1.0000	139.0	3.14%	1301.9	3.21%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-4.860e-01	1.0000	172.0	3.88%	1607.7	3.96%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.832e-01	1.0000	17.0	0.38%	164.2	0.40%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.788e-01	1.0000	25.0	0.56%	240.0	0.59%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-4.783e-01	1.0000	140.0	3.16%	1312.5	3.24%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.753e-01	1.0000	29.0	0.65%	278.6	0.69%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-4.714e-01	1.0000	459.0	10.37%	4260.0	10.50%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-4.673e-01	1.0000	907.0	20.48%	8384.4	20.67%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-4.660e-01	1.0000	318.0	7.18%	2961.9	7.30%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-4.623e-01	1.0000	46.0	1.04%	439.9	1.08%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-4.603e-01	1.0000	800.0	18.07%	7403.6	18.25%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.574e-01	1.0000	14.0	0.32%	137.5	0.34%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.568e-01	1.0000	100.0	2.26%	945.0	2.33%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-4.563e-01	1.0000	270.0	6.10%	2521.0	6.22%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-4.562e-01	1.0000	69.0	1.56%	655.2	1.62%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.542e-01	1.0000	57.0	1.29%	543.5	1.34%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-4.486e-01	1.0000	10.0	0.23%	99.6	0.25%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-4.461e-01	1.0000	380.0	8.58%	3539.9	8.73%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-4.443e-01	1.0000	126.0	2.85%	1188.1	2.93%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.402e-01	1.0000	86.0	1.94%	816.1	2.01%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-4.392e-01	1.0000	40.0	0.90%	385.6	0.95%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-4.379e-01	1.0000	97.0	2.19%	919.5	2.27%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.360e-01	1.0000	165.0	3.73%	1552.2	3.83%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.348e-01	1.0000	9.0	0.20%	90.9	0.22%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.333e-01	1.0000	20.0	0.45%	196.9	0.49%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.316e-01	1.0000	18.0	0.41%	177.6	0.44%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-4.304e-01	1.0000	571.0	12.90%	5306.3	13.08%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-4.264e-01	1.0000	37.0	0.84%	358.1	0.88%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.229e-01	1.0000	50.0	1.13%	481.2	1.19%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-4.211e-01	1.0000	175.0	3.95%	1649.0	4.07%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.184e-01	1.0000	4422.0	99.86%	40508.6	99.87%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-4.172e-01	1.0000	744.0	16.80%	6905.0	17.02%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-4.127e-01	1.0000	149.0	3.36%	1409.0	3.47%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.012e-01	1.0000	5.0	0.11%	52.3	0.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.994e-01	1.0000	482.0	10.89%	4496.8	11.09%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-3.971e-01	1.0000	250.0	5.65%	2350.9	5.80%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-3.962e-01	1.0000	972.0	21.95%	9013.0	22.22%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-3.949e-01	1.0000	14.0	0.32%	141.5	0.35%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.947e-01	1.0000	20.0	0.45%	200.0	0.49%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.898e-01	1.0000	59.0	1.33%	570.7	1.41%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.773e-01	1.0000	10.0	0.23%	103.1	0.25%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.753e-01	1.0000	233.0	5.26%	2198.2	5.42%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-3.749e-01	1.0000	120.0	2.71%	1145.3	2.82%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.710e-01	1.0000	69.0	1.56%	667.2	1.64%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-3.689e-01	1.0000	437.0	9.87%	4091.8	10.09%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-3.679e-01	1.0000	1188.0	26.83%	11014.9	27.16%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-3.679e-01	1.0000	108.0	2.44%	1034.2	2.55%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-3.586e-01	1.0000	165.0	3.73%	1569.6	3.87%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-3.579e-01	1.0000	1.0	0.02%	11.5	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-3.579e-01	1.0000	1.0	0.02%	11.5	0.03%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.565e-01	1.0000	73.0	1.65%	708.0	1.75%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.540e-01	1.0000	750.0	16.94%	6988.8	17.23%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-3.388e-01	1.0000	1506.0	34.01%	13953.5	34.40%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.339e-01	1.0000	21.0	0.47%	214.3	0.53%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-3.331e-01	1.0000	3.0	0.07%	34.3	0.08%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.315e-01	1.0000	77.0	1.74%	749.1	1.85%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-3.313e-01	1.0000	414.0	9.35%	3892.1	9.60%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-3.311e-01	1.0000	52.0	1.17%	512.5	1.26%
SeqBias: CG bias	SSSSSSSSSS	1e0	-3.310e-01	1.0000	2748.0	62.06%	25337.4	62.47%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-3.291e-01	1.0000	29.0	0.65%	292.9	0.72%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-3.286e-01	1.0000	8.0	0.18%	86.8	0.21%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.239e-01	1.0000	357.0	8.06%	3367.0	8.30%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-3.224e-01	1.0000	324.0	7.32%	3060.6	7.55%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-3.202e-01	1.0000	534.0	12.06%	5008.0	12.35%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.199e-01	1.0000	345.0	7.79%	3256.2	8.03%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-3.190e-01	1.0000	878.0	19.83%	8187.0	20.18%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-3.166e-01	1.0000	591.0	13.35%	5537.8	13.65%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.149e-01	1.0000	14.0	0.32%	147.7	0.36%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-3.144e-01	1.0000	1.0	0.02%	12.0	0.03%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-3.108e-01	1.0000	149.0	3.36%	1431.5	3.53%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.054e-01	1.0000	378.0	8.54%	3568.7	8.80%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-3.044e-01	1.0000	108.0	2.44%	1047.4	2.58%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.035e-01	1.0000	4.0	0.09%	46.8	0.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.012e-01	1.0000	80.0	1.81%	783.2	1.93%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-3.009e-01	1.0000	225.0	5.08%	2145.4	5.29%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-2.965e-01	1.0000	589.0	13.30%	5528.1	13.63%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.881e-01	1.0000	251.0	5.67%	2392.0	5.90%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-2.792e-01	1.0000	413.0	9.33%	3904.0	9.63%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-2.783e-01	1.0000	1155.0	26.08%	10763.5	26.54%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.769e-01	1.0000	1.0	0.02%	13.5	0.03%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-2.750e-01	1.0000	267.0	6.03%	2546.8	6.28%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-2.736e-01	1.0000	47.0	1.06%	473.7	1.17%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-2.657e-01	1.0000	846.0	19.11%	7921.7	19.53%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.621e-01	1.0000	104.0	2.35%	1019.8	2.51%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.619e-01	1.0000	587.0	13.26%	5527.3	13.63%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.619e-01	1.0000	106.0	2.39%	1038.3	2.56%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.558e-01	1.0000	44.0	0.99%	447.3	1.10%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-2.532e-01	1.0000	1602.0	36.18%	14893.1	36.72%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-2.501e-01	1.0000	726.0	16.40%	6821.3	16.82%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.485e-01	1.0000	525.0	11.86%	4959.4	12.23%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-2.441e-01	1.0000	279.0	6.30%	2670.9	6.58%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-2.430e-01	1.0000	467.0	10.55%	4423.4	10.91%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.392e-01	1.0000	125.0	2.82%	1224.5	3.02%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.391e-01	1.0000	25.0	0.56%	265.0	0.65%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-2.386e-01	1.0000	417.0	9.42%	3960.8	9.77%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-2.372e-01	1.0000	128.0	2.89%	1253.1	3.09%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.365e-01	1.0000	9.0	0.20%	103.8	0.26%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-2.356e-01	1.0000	211.0	4.77%	2036.7	5.02%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.317e-01	1.0000	327.0	7.38%	3124.5	7.70%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.301e-01	1.0000	201.0	4.54%	1944.2	4.79%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.241e-01	1.0000	72.0	1.63%	723.3	1.78%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-2.239e-01	1.0000	568.0	12.83%	5372.0	13.24%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.207e-01	1.0000	120.0	2.71%	1182.1	2.91%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-2.175e-01	1.0000	204.0	4.61%	1977.4	4.88%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-2.163e-01	1.0000	691.0	15.61%	6518.7	16.07%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-2.157e-01	1.0000	125.0	2.82%	1231.5	3.04%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.153e-01	1.0000	96.0	2.17%	955.7	2.36%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.077e-01	1.0000	136.0	3.07%	1338.9	3.30%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-2.069e-01	1.0000	263.0	5.94%	2536.1	6.25%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.058e-01	1.0000	102.0	2.30%	1015.6	2.50%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.048e-01	1.0000	228.0	5.15%	2208.7	5.45%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.047e-01	1.0000	292.0	6.59%	2809.8	6.93%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.046e-01	1.0000	25.0	0.56%	269.4	0.66%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-2.045e-01	1.0000	144.0	3.25%	1415.1	3.49%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.042e-01	1.0000	116.0	2.62%	1149.5	2.83%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.036e-01	1.0000	5.0	0.11%	63.3	0.16%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-2.026e-01	1.0000	51.0	1.15%	525.7	1.30%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.014e-01	1.0000	13.0	0.29%	148.5	0.37%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.996e-01	1.0000	16.0	0.36%	179.4	0.44%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.973e-01	1.0000	553.0	12.49%	5249.7	12.94%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-1.953e-01	1.0000	2022.0	45.66%	18798.7	46.35%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.931e-01	1.0000	2.0	0.05%	29.3	0.07%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.926e-01	1.0000	111.0	2.51%	1105.7	2.73%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.900e-01	1.0000	33.0	0.75%	351.1	0.87%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.889e-01	1.0000	663.0	14.97%	6277.1	15.48%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.865e-01	1.0000	92.0	2.08%	925.4	2.28%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.838e-01	1.0000	633.0	14.30%	6002.1	14.80%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.822e-01	1.0000	140.0	3.16%	1385.1	3.41%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.792e-01	1.0000	34.0	0.77%	363.1	0.90%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.753e-01	1.0000	923.0	20.84%	8698.9	21.45%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.752e-01	1.0000	234.0	5.28%	2278.9	5.62%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.726e-01	1.0000	115.0	2.60%	1150.1	2.84%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.708e-01	1.0000	16.0	0.36%	183.3	0.45%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.704e-01	1.0000	7.0	0.16%	88.1	0.22%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.702e-01	1.0000	6.0	0.14%	77.1	0.19%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.696e-01	1.0000	292.0	6.59%	2827.5	6.97%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.694e-01	1.0000	34.0	0.77%	365.9	0.90%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-1.690e-01	1.0000	539.0	12.17%	5138.5	12.67%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.686e-01	1.0000	749.0	16.92%	7091.4	17.48%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.664e-01	1.0000	384.0	8.67%	3692.5	9.10%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-1.650e-01	1.0000	31.0	0.70%	336.9	0.83%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.641e-01	1.0000	226.0	5.10%	2208.3	5.44%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.589e-01	1.0000	4282.0	96.70%	39328.1	96.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.509e-01	1.0000	31.0	0.70%	339.5	0.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.502e-01	1.0000	40.0	0.90%	429.7	1.06%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.443e-01	1.0000	786.0	17.75%	7456.1	18.38%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.431e-01	1.0000	70.0	1.58%	726.7	1.79%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.416e-01	1.0000	3.0	0.07%	45.1	0.11%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.387e-01	1.0000	435.0	9.82%	4189.1	10.33%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.370e-01	1.0000	548.0	12.38%	5247.5	12.94%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.367e-01	1.0000	8.0	0.18%	103.9	0.26%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.362e-01	1.0000	67.0	1.51%	699.7	1.72%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.342e-01	1.0000	1.0	0.02%	19.8	0.05%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.331e-01	1.0000	122.0	2.76%	1233.7	3.04%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.323e-01	1.0000	58.0	1.31%	612.3	1.51%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-1.320e-01	1.0000	601.0	13.57%	5746.6	14.17%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.284e-01	1.0000	7.0	0.16%	93.9	0.23%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.283e-01	1.0000	212.0	4.79%	2095.2	5.17%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-1.273e-01	1.0000	167.0	3.77%	1667.9	4.11%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.273e-01	1.0000	88.0	1.99%	907.7	2.24%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.271e-01	1.0000	375.0	8.47%	3635.6	8.96%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.271e-01	1.0000	35.0	0.79%	385.4	0.95%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.258e-01	1.0000	112.0	2.53%	1140.6	2.81%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.236e-01	1.0000	47.0	1.06%	506.0	1.25%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-1.221e-01	1.0000	11.0	0.25%	138.8	0.34%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.211e-01	1.0000	269.0	6.07%	2640.5	6.51%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.192e-01	1.0000	245.0	5.53%	2414.1	5.95%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.164e-01	1.0000	68.0	1.54%	716.5	1.77%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.153e-01	1.0000	99.0	2.24%	1019.9	2.51%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.123e-01	1.0000	107.0	2.42%	1098.4	2.71%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.115e-01	1.0000	2.0	0.05%	35.5	0.09%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.100e-01	1.0000	550.0	12.42%	5291.8	13.05%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.096e-01	1.0000	98.0	2.21%	1012.7	2.50%
 Ik-1	NHTTGGGAATRCC	1e0	-1.092e-01	1.0000	4428.0	100.00%	40560.9	100.00%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.088e-01	1.0000	419.0	9.46%	4064.7	10.02%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.069e-01	1.0000	857.0	19.35%	8156.3	20.11%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.057e-01	1.0000	20.0	0.45%	237.4	0.59%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.035e-01	1.0000	352.0	7.95%	3438.0	8.48%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.034e-01	1.0000	277.0	6.26%	2729.9	6.73%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.006e-01	1.0000	138.0	3.12%	1404.1	3.46%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-9.814e-02	1.0000	258.0	5.83%	2553.1	6.29%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-9.766e-02	1.0000	48.0	1.08%	525.5	1.30%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.743e-02	1.0000	245.0	5.53%	2430.8	5.99%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-9.605e-02	1.0000	285.0	6.44%	2811.3	6.93%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-9.584e-02	1.0000	216.0	4.88%	2155.4	5.31%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-9.365e-02	1.0000	18.0	0.41%	219.3	0.54%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-9.314e-02	1.0000	530.0	11.97%	5122.9	12.63%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-9.267e-02	1.0000	49.0	1.11%	537.5	1.33%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-9.232e-02	1.0000	237.0	5.35%	2358.3	5.81%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.094e-02	1.0000	286.0	6.46%	2825.7	6.97%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-9.058e-02	1.0000	7.0	0.16%	99.0	0.24%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-8.790e-02	1.0000	179.0	4.04%	1807.3	4.46%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-8.740e-02	1.0000	92.0	2.08%	965.1	2.38%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-8.735e-02	1.0000	248.0	5.60%	2467.0	6.08%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.672e-02	1.0000	68.0	1.54%	729.2	1.80%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.484e-02	1.0000	16.0	0.36%	200.7	0.49%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-8.378e-02	1.0000	816.0	18.43%	7806.9	19.25%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-8.314e-02	1.0000	48.0	1.08%	531.9	1.31%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.310e-02	1.0000	318.0	7.18%	3136.5	7.73%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-8.265e-02	1.0000	584.0	13.19%	5641.0	13.91%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-7.956e-02	1.0000	397.0	8.97%	3888.0	9.59%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-7.861e-02	1.0000	927.0	20.93%	8847.0	21.81%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-7.834e-02	1.0000	396.0	8.94%	3879.7	9.57%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-7.787e-02	1.0000	525.0	11.86%	5094.7	12.56%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-7.723e-02	1.0000	2.0	0.05%	39.6	0.10%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-7.723e-02	1.0000	2.0	0.05%	39.9	0.10%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.517e-02	1.0000	34.0	0.77%	392.7	0.97%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-7.490e-02	1.0000	430.0	9.71%	4205.0	10.37%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-7.438e-02	1.0000	20.0	0.45%	246.5	0.61%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-7.412e-02	1.0000	151.0	3.41%	1548.8	3.82%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-7.272e-02	1.0000	370.0	8.36%	3640.4	8.98%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-7.262e-02	1.0000	340.0	7.68%	3356.0	8.27%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-7.148e-02	1.0000	12.0	0.27%	160.3	0.40%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.133e-02	1.0000	5.0	0.11%	79.5	0.20%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-7.088e-02	1.0000	997.0	22.52%	9511.6	23.45%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-6.933e-02	1.0000	77.0	1.74%	828.3	2.04%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-6.808e-02	1.0000	299.0	6.75%	2972.1	7.33%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-6.644e-02	1.0000	75.0	1.69%	810.8	2.00%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.451e-02	1.0000	18.0	0.41%	228.6	0.56%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-6.451e-02	1.0000	201.0	4.54%	2039.7	5.03%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-6.430e-02	1.0000	162.0	3.66%	1663.7	4.10%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.291e-02	1.0000	178.0	4.02%	1819.4	4.49%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.142e-02	1.0000	137.0	3.09%	1423.7	3.51%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-6.070e-02	1.0000	69.0	1.56%	754.6	1.86%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-5.961e-02	1.0000	537.0	12.13%	5234.5	12.91%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.946e-02	1.0000	7.0	0.16%	106.3	0.26%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.946e-02	1.0000	7.0	0.16%	106.3	0.26%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.932e-02	1.0000	39.0	0.88%	451.3	1.11%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-5.897e-02	1.0000	52.0	1.17%	584.9	1.44%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-5.861e-02	1.0000	858.0	19.38%	8241.2	20.32%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-5.854e-02	1.0000	41.0	0.93%	472.1	1.16%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.780e-02	1.0000	9.0	0.20%	130.9	0.32%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-5.760e-02	1.0000	205.0	4.63%	2085.4	5.14%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.685e-02	1.0000	14.0	0.32%	187.5	0.46%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.632e-02	1.0000	92.0	2.08%	986.3	2.43%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.454e-02	1.0000	17.0	0.38%	221.4	0.55%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.340e-02	1.0000	2.0	0.05%	43.4	0.11%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.280e-02	1.0000	316.0	7.14%	3154.7	7.78%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-5.264e-02	1.0000	175.0	3.95%	1801.9	4.44%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-5.207e-02	1.0000	18.0	0.41%	233.4	0.58%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-5.132e-02	1.0000	468.0	10.57%	4598.3	11.34%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.011e-02	1.0000	38.0	0.86%	446.3	1.10%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-4.980e-02	1.0000	3.0	0.07%	58.4	0.14%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-4.768e-02	1.0000	628.0	14.18%	6112.6	15.07%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.716e-02	1.0000	66.0	1.49%	735.0	1.81%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-4.638e-02	1.0000	287.0	6.48%	2887.5	7.12%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-4.474e-02	1.0000	1448.0	32.70%	13751.5	33.90%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.427e-02	1.0000	32.0	0.72%	387.2	0.95%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-4.379e-02	1.0000	873.0	19.72%	8415.2	20.75%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.102e-02	1.0000	12.0	0.27%	171.5	0.42%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-4.060e-02	1.0000	1416.0	31.98%	13468.3	33.21%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.047e-02	1.0000	39.0	0.88%	463.0	1.14%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.014e-02	1.0000	622.0	14.05%	6073.4	14.97%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-3.939e-02	1.0000	55.0	1.24%	629.6	1.55%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-3.863e-02	1.0000	137.0	3.09%	1448.8	3.57%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.813e-02	1.0000	260.0	5.87%	2642.5	6.51%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.578e-02	1.0000	11.0	0.25%	162.8	0.40%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-3.544e-02	1.0000	127.0	2.87%	1354.1	3.34%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-3.519e-02	1.0000	87.0	1.96%	957.6	2.36%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-3.491e-02	1.0000	731.0	16.51%	7111.3	17.53%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-3.454e-02	1.0000	465.0	10.50%	4605.3	11.35%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.452e-02	1.0000	32.0	0.72%	394.2	0.97%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-3.417e-02	1.0000	297.0	6.71%	3005.6	7.41%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.293e-02	1.0000	3.0	0.07%	63.9	0.16%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.252e-02	1.0000	31.0	0.70%	385.6	0.95%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-3.085e-02	1.0000	372.0	8.40%	3730.8	9.20%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-3.073e-02	1.0000	9.0	0.20%	141.7	0.35%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-3.062e-02	1.0000	614.0	13.87%	6024.2	14.85%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.013e-02	1.0000	4.0	0.09%	78.7	0.19%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-3.002e-02	1.0000	266.0	6.01%	2716.3	6.70%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-2.932e-02	1.0000	496.0	11.20%	4913.9	12.11%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-2.762e-02	1.0000	473.0	10.68%	4701.0	11.59%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.730e-02	1.0000	9.0	0.20%	143.3	0.35%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-2.714e-02	1.0000	597.0	13.48%	5875.5	14.49%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.695e-02	1.0000	120.0	2.71%	1298.3	3.20%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.675e-02	1.0000	35.0	0.79%	433.4	1.07%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-2.659e-02	1.0000	38.0	0.86%	465.4	1.15%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.637e-02	1.0000	1086.0	24.53%	10459.4	25.79%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-2.571e-02	1.0000	123.0	2.78%	1330.7	3.28%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.559e-02	1.0000	168.0	3.79%	1774.3	4.37%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.545e-02	1.0000	146.0	3.30%	1558.1	3.84%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.545e-02	1.0000	146.0	3.30%	1558.1	3.84%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-2.533e-02	1.0000	289.0	6.53%	2949.9	7.27%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-2.420e-02	1.0000	18.0	0.41%	250.4	0.62%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.412e-02	1.0000	12.0	0.27%	182.0	0.45%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-2.405e-02	1.0000	458.0	10.34%	4569.7	11.27%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-2.334e-02	1.0000	14.0	0.32%	205.7	0.51%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.311e-02	1.0000	5.0	0.11%	95.2	0.23%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.296e-02	1.0000	41.0	0.93%	501.8	1.24%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.268e-02	1.0000	79.0	1.78%	894.1	2.20%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-2.257e-02	1.0000	50.0	1.13%	596.6	1.47%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-2.232e-02	1.0000	659.0	14.88%	6478.3	15.97%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-2.154e-02	1.0000	43.0	0.97%	524.8	1.29%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-2.113e-02	1.0000	263.0	5.94%	2710.4	6.68%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.085e-02	1.0000	56.0	1.26%	661.7	1.63%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-2.042e-02	1.0000	42.0	0.95%	516.0	1.27%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-2.031e-02	1.0000	781.0	17.64%	7635.3	18.82%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-2.030e-02	1.0000	59.0	1.33%	693.6	1.71%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-1.995e-02	1.0000	413.0	9.33%	4155.3	10.24%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.930e-02	1.0000	208.0	4.70%	2181.8	5.38%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.927e-02	1.0000	281.0	6.35%	2890.5	7.13%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.921e-02	1.0000	134.0	3.03%	1453.9	3.58%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.895e-02	1.0000	107.0	2.42%	1184.2	2.92%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.890e-02	1.0000	4.0	0.09%	84.2	0.21%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.763e-02	1.0000	32.0	0.72%	412.7	1.02%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.736e-02	1.0000	18.0	0.41%	257.7	0.64%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.713e-02	1.0000	25.0	0.56%	336.5	0.83%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-1.644e-02	1.0000	162.0	3.66%	1738.7	4.29%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.624e-02	1.0000	284.0	6.41%	2930.4	7.22%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.610e-02	1.0000	273.0	6.17%	2824.1	6.96%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.550e-02	1.0000	308.0	6.96%	3165.4	7.80%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.545e-02	1.0000	64.0	1.45%	754.1	1.86%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.505e-02	1.0000	92.0	2.08%	1042.3	2.57%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.501e-02	1.0000	331.0	7.48%	3389.2	8.36%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.456e-02	1.0000	274.0	6.19%	2840.4	7.00%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.445e-02	1.0000	174.0	3.93%	1863.1	4.59%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.428e-02	1.0000	197.0	4.45%	2090.8	5.15%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.417e-02	1.0000	515.0	11.63%	5154.8	12.71%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-1.398e-02	1.0000	179.0	4.04%	1914.7	4.72%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.374e-02	1.0000	46.0	1.04%	569.1	1.40%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.369e-02	1.0000	214.0	4.83%	2259.3	5.57%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-1.345e-02	1.0000	792.0	17.89%	7778.9	19.18%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.313e-02	1.0000	9.0	0.20%	155.6	0.38%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.310e-02	1.0000	41.0	0.93%	517.4	1.28%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.277e-02	1.0000	394.0	8.90%	4006.2	9.88%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-1.272e-02	1.0000	402.0	9.08%	4083.8	10.07%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.267e-02	1.0000	144.0	3.25%	1572.4	3.88%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.262e-02	1.0000	1227.0	27.71%	11854.0	29.23%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.225e-02	1.0000	44.0	0.99%	551.7	1.36%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.190e-02	1.0000	87.0	1.96%	1000.5	2.47%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.186e-02	1.0000	312.0	7.05%	3222.0	7.94%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-1.098e-02	1.0000	32.0	0.72%	424.5	1.05%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-1.047e-02	1.0000	29.0	0.65%	392.2	0.97%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-1.029e-02	1.0000	354.0	7.99%	3636.3	8.97%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-1.024e-02	1.0000	1999.0	45.14%	19011.3	46.87%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-9.866e-03	1.0000	23.0	0.52%	326.6	0.81%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.749e-03	1.0000	17.0	0.38%	257.9	0.64%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-9.435e-03	1.0000	19.0	0.43%	281.3	0.69%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-9.227e-03	1.0000	29.0	0.65%	396.0	0.98%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-9.175e-03	1.0000	1991.0	44.96%	18950.0	46.72%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-8.484e-03	1.0000	322.0	7.27%	3339.0	8.23%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-7.817e-03	1.0000	298.0	6.73%	3111.8	7.67%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-7.647e-03	1.0000	156.0	3.52%	1715.1	4.23%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-7.136e-03	1.0000	14.0	0.32%	227.9	0.56%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.887e-03	1.0000	94.0	2.12%	1093.0	2.69%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.088e-03	1.0000	673.0	15.20%	6723.9	16.58%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.038e-03	1.0000	51.0	1.15%	646.6	1.59%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-5.972e-03	1.0000	205.0	4.63%	2214.9	5.46%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-5.938e-03	1.0000	146.0	3.30%	1626.3	4.01%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.464e-03	1.0000	290.0	6.55%	3054.1	7.53%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-5.125e-03	1.0000	242.0	5.47%	2587.2	6.38%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.111e-03	1.0000	25.0	0.56%	363.8	0.90%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-5.100e-03	1.0000	294.0	6.64%	3097.1	7.64%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-5.066e-03	1.0000	129.0	2.91%	1461.1	3.60%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-4.904e-03	1.0000	160.0	3.61%	1775.3	4.38%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-4.262e-03	1.0000	312.0	7.05%	3283.8	8.10%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-4.097e-03	1.0000	148.0	3.34%	1662.2	4.10%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.049e-03	1.0000	56.0	1.26%	711.1	1.75%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-3.747e-03	1.0000	459.0	10.37%	4715.1	11.62%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.661e-03	1.0000	79.0	1.78%	958.3	2.36%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-3.640e-03	1.0000	160.0	3.61%	1788.1	4.41%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-3.536e-03	1.0000	177.0	4.00%	1960.5	4.83%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.451e-03	1.0000	829.0	18.72%	8246.5	20.33%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-3.032e-03	1.0000	198.0	4.47%	2177.8	5.37%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.718e-03	1.0000	707.0	15.97%	7109.3	17.53%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-2.637e-03	1.0000	80.0	1.81%	979.1	2.41%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.538e-03	1.0000	412.0	9.30%	4286.2	10.57%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.479e-03	1.0000	117.0	2.64%	1366.9	3.37%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-2.287e-03	1.0000	155.0	3.50%	1757.2	4.33%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.180e-03	1.0000	143.0	3.23%	1637.0	4.04%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-2.168e-03	1.0000	546.0	12.33%	5588.4	13.78%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-2.057e-03	1.0000	94.0	2.12%	1134.8	2.80%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.921e-03	1.0000	134.0	3.03%	1550.1	3.82%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-1.899e-03	1.0000	350.0	7.90%	3700.9	9.12%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.861e-03	1.0000	177.0	4.00%	1988.5	4.90%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.757e-03	1.0000	157.0	3.55%	1788.8	4.41%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.722e-03	1.0000	142.0	3.21%	1637.0	4.04%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.693e-03	1.0000	9.0	0.20%	187.0	0.46%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.672e-03	1.0000	268.0	6.05%	2901.1	7.15%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.672e-03	1.0000	19.0	0.43%	314.7	0.78%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.654e-03	1.0000	168.0	3.79%	1902.7	4.69%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.622e-03	1.0000	179.0	4.04%	2014.1	4.97%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-1.574e-03	1.0000	55.0	1.24%	726.2	1.79%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.488e-03	1.0000	60.0	1.36%	782.7	1.93%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.420e-03	1.0000	336.0	7.59%	3579.1	8.82%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.338e-03	1.0000	77.0	1.74%	968.7	2.39%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.253e-03	1.0000	364.0	8.22%	3860.3	9.52%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.109e-03	1.0000	22.0	0.50%	358.5	0.88%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.078e-03	1.0000	17.0	0.38%	297.0	0.73%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-1.049e-03	1.0000	297.0	6.71%	3211.5	7.92%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-1.004e-03	1.0000	144.0	3.25%	1677.3	4.14%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.340e-04	1.0000	861.0	19.44%	8651.5	21.33%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-9.170e-04	1.0000	37.0	0.84%	538.3	1.33%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-8.460e-04	1.0000	245.0	5.53%	2705.8	6.67%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-8.220e-04	1.0000	158.0	3.57%	1829.0	4.51%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-7.610e-04	1.0000	1539.0	34.76%	15022.6	37.04%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-7.280e-04	1.0000	59.0	1.33%	790.7	1.95%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-7.260e-04	1.0000	23.0	0.52%	378.1	0.93%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-7.070e-04	1.0000	141.0	3.18%	1659.9	4.09%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-6.490e-04	1.0000	6.0	0.14%	156.5	0.39%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-6.210e-04	1.0000	29.0	0.65%	453.7	1.12%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.140e-04	1.0000	75.0	1.69%	969.1	2.39%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.510e-04	1.0000	75.0	1.69%	972.7	2.40%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-5.330e-04	1.0000	11.0	0.25%	230.5	0.57%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.160e-04	1.0000	96.0	2.17%	1199.9	2.96%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-4.930e-04	1.0000	842.0	19.02%	8517.3	21.00%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-4.280e-04	1.0000	203.0	4.58%	2312.2	5.70%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-4.170e-04	1.0000	395.0	8.92%	4223.2	10.41%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-2.940e-04	1.0000	378.0	8.54%	4074.0	10.04%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-2.870e-04	1.0000	10.0	0.23%	225.9	0.56%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.360e-04	1.0000	77.0	1.74%	1017.1	2.51%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.080e-04	1.0000	81.0	1.83%	1064.6	2.62%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.940e-04	1.0000	170.0	3.84%	2005.9	4.95%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.820e-04	1.0000	72.0	1.63%	969.4	2.39%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.810e-04	1.0000	994.0	22.45%	10029.6	24.73%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-1.720e-04	1.0000	190.0	4.29%	2215.0	5.46%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-1.630e-04	1.0000	133.0	3.00%	1626.3	4.01%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.410e-04	1.0000	423.0	9.55%	4554.6	11.23%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-1.340e-04	1.0000	533.0	12.04%	5632.5	13.89%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.320e-04	1.0000	356.0	8.04%	3896.9	9.61%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.090e-04	1.0000	206.0	4.65%	2397.0	5.91%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-8.900e-05	1.0000	230.0	5.19%	2649.0	6.53%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-8.800e-05	1.0000	117.0	2.64%	1476.3	3.64%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-8.600e-05	1.0000	141.0	3.18%	1732.0	4.27%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-7.200e-05	1.0000	284.0	6.41%	3204.6	7.90%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-5.300e-05	1.0000	1.0	0.02%	90.6	0.22%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-4.700e-05	1.0000	186.0	4.20%	2221.2	5.48%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-4.400e-05	1.0000	90.0	2.03%	1204.3	2.97%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-4.000e-05	1.0000	187.0	4.22%	2237.4	5.52%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-2.800e-05	1.0000	206.0	4.65%	2446.1	6.03%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.600e-05	1.0000	81.0	1.83%	1118.8	2.76%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.300e-05	1.0000	364.0	8.22%	4055.8	10.00%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-2.200e-05	1.0000	517.0	11.68%	5570.5	13.73%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.200e-05	1.0000	269.0	6.07%	3100.1	7.64%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.000e-05	1.0000	139.0	3.14%	1755.6	4.33%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.000e-05	1.0000	101.0	2.28%	1346.3	3.32%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.600e-05	1.0000	129.0	2.91%	1654.9	4.08%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.400e-05	1.0000	414.0	9.35%	4576.5	11.28%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.300e-05	1.0000	322.0	7.27%	3659.7	9.02%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-9.000e-06	1.0000	205.0	4.63%	2473.1	6.10%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-9.000e-06	1.0000	318.0	7.18%	3633.3	8.96%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-8.000e-06	1.0000	247.0	5.58%	2915.0	7.19%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-7.000e-06	1.0000	280.0	6.32%	3257.3	8.03%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.000e-06	1.0000	398.0	8.99%	4452.2	10.98%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-6.000e-06	1.0000	286.0	6.46%	3326.9	8.20%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-4.000e-06	1.0000	34.0	0.77%	607.3	1.50%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.000e-06	1.0000	237.0	5.35%	2843.9	7.01%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-3.000e-06	1.0000	37.0	0.84%	653.2	1.61%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-2.000e-06	1.0000	214.0	4.83%	2612.8	6.44%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.000e-06	1.0000	216.0	4.88%	2633.6	6.49%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-2.000e-06	1.0000	31.0	0.70%	580.3	1.43%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.000e-06	1.0000	52.0	1.17%	843.5	2.08%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.000e-06	1.0000	351.0	7.93%	4046.6	9.98%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.000e-06	1.0000	436.0	9.85%	4910.1	12.11%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.000e-06	1.0000	264.0	5.96%	3170.7	7.82%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-1.000e-06	1.0000	28.0	0.63%	560.4	1.38%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.000e-06	1.0000	149.0	3.36%	1960.2	4.83%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.000e-06	1.0000	207.0	4.67%	2583.2	6.37%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-0.000e+00	1.0000	109.0	2.46%	1538.6	3.79%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-0.000e+00	1.0000	107.0	2.42%	1534.4	3.78%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-0.000e+00	1.0000	83.0	1.87%	1266.7	3.12%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-0.000e+00	1.0000	723.0	16.33%	7845.0	19.34%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-0.000e+00	1.0000	198.0	4.47%	2547.4	6.28%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-0.000e+00	1.0000	41.0	0.93%	764.6	1.89%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-0.000e+00	1.0000	328.0	7.41%	3914.6	9.65%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-0.000e+00	1.0000	47.0	1.06%	844.4	2.08%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	212.0	4.79%	2706.1	6.67%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-0.000e+00	1.0000	237.0	5.35%	2985.2	7.36%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-0.000e+00	1.0000	90.0	2.03%	1374.6	3.39%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-0.000e+00	1.0000	82.0	1.85%	1290.2	3.18%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	219.0	4.95%	2812.5	6.93%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-0.000e+00	1.0000	155.0	3.50%	2121.8	5.23%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-0.000e+00	1.0000	984.0	22.22%	10466.2	25.80%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-0.000e+00	1.0000	131.0	2.96%	1877.1	4.63%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-0.000e+00	1.0000	76.0	1.72%	1254.3	3.09%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	153.0	3.46%	2159.4	5.32%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-0.000e+00	1.0000	74.0	1.67%	1246.8	3.07%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	398.0	8.99%	4774.6	11.77%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-0.000e+00	1.0000	135.0	3.05%	1968.4	4.85%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-0.000e+00	1.0000	148.0	3.34%	2129.7	5.25%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-0.000e+00	1.0000	99.0	2.24%	1572.2	3.88%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-0.000e+00	1.0000	189.0	4.27%	2598.2	6.41%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-0.000e+00	1.0000	123.0	2.78%	1861.0	4.59%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-0.000e+00	1.0000	76.0	1.72%	1317.8	3.25%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-0.000e+00	1.0000	107.0	2.42%	1690.5	4.17%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-0.000e+00	1.0000	40.0	0.90%	858.2	2.12%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-0.000e+00	1.0000	140.0	3.16%	2080.8	5.13%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-0.000e+00	1.0000	124.0	2.80%	1897.7	4.68%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	144.0	3.25%	2130.7	5.25%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	196.0	4.43%	2715.8	6.70%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-0.000e+00	1.0000	206.0	4.65%	2829.5	6.98%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-0.000e+00	1.0000	121.0	2.73%	1890.3	4.66%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-0.000e+00	1.0000	133.0	3.00%	2037.7	5.02%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-0.000e+00	1.0000	129.0	2.91%	1992.4	4.91%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-0.000e+00	1.0000	132.0	2.98%	2030.8	5.01%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-0.000e+00	1.0000	73.0	1.65%	1332.8	3.29%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-0.000e+00	1.0000	169.0	3.82%	2468.2	6.09%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-0.000e+00	1.0000	92.0	2.08%	1570.1	3.87%
SeqBias: TA-repeat	TATATATATA	1e0	-0.000e+00	1.0000	699.0	15.79%	8060.3	19.87%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-0.000e+00	1.0000	718.0	16.21%	8259.5	20.36%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-0.000e+00	1.0000	377.0	8.51%	4793.9	11.82%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-0.000e+00	1.0000	106.0	2.39%	1806.8	4.45%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	338.0	7.63%	4508.3	11.11%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	6.3	0.02%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	3.4	0.01%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.1	0.01%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.7	0.00%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	0.0	0.00%	9.0	0.02%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.00%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	0.000e+00	1.0000	143.0	3.23%	2439.7	6.01%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%