Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2716)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46575)	% of Background Sequences with Motif
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-10	-2.372e+01	0.0000	264.0	9.72%	3004.1	6.45%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-4	-1.136e+01	0.0059	467.0	17.20%	6647.5	14.27%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-3	-8.591e+00	0.0623	319.0	11.75%	4498.8	9.66%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-3	-7.902e+00	0.0930	704.0	25.93%	10781.8	23.15%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-3	-7.275e+00	0.1394	771.0	28.40%	11957.7	25.67%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-3	-7.177e+00	0.1394	63.0	2.32%	703.2	1.51%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-3	-7.024e+00	0.1394	299.0	11.01%	4293.3	9.22%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-3	-6.981e+00	0.1394	782.0	28.80%	12173.7	26.14%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-3	-6.938e+00	0.1394	329.0	12.12%	4776.5	10.26%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-2	-6.829e+00	0.1394	358.0	13.19%	5248.2	11.27%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-2	-6.612e+00	0.1394	300.0	11.05%	4340.5	9.32%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-2	-6.520e+00	0.1394	360.0	13.26%	5307.0	11.39%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-2	-6.361e+00	0.1394	623.0	22.95%	9609.5	20.63%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e-2	-6.271e+00	0.1394	241.0	8.88%	3432.1	7.37%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-2	-6.262e+00	0.1394	229.0	8.43%	3244.2	6.97%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-2	-6.175e+00	0.1394	531.0	19.56%	8116.5	17.43%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-2	-6.135e+00	0.1394	414.0	15.25%	6212.1	13.34%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-2	-6.102e+00	0.1394	251.0	9.24%	3602.5	7.73%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-2	-6.026e+00	0.1394	367.0	13.52%	5462.0	11.73%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e-2	-6.004e+00	0.1394	440.0	16.21%	6647.1	14.27%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-2	-5.989e+00	0.1394	148.0	5.45%	2004.6	4.30%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e-2	-5.964e+00	0.1394	259.0	9.54%	3739.9	8.03%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-2	-5.962e+00	0.1394	191.0	7.03%	2670.7	5.73%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-5.896e+00	0.1394	153.0	5.64%	2086.2	4.48%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-2	-5.786e+00	0.1394	460.0	16.94%	6995.2	15.02%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-2	-5.719e+00	0.1394	460.0	16.94%	7002.7	15.03%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-2	-5.665e+00	0.1394	163.0	6.00%	2254.8	4.84%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-2	-5.464e+00	0.1521	370.0	13.63%	5563.2	11.94%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-2	-5.404e+00	0.1560	215.0	7.92%	3085.5	6.62%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-2	-5.297e+00	0.1679	77.0	2.84%	969.3	2.08%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-2	-5.296e+00	0.1679	259.0	9.54%	3792.5	8.14%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-2	-5.278e+00	0.1679	497.0	18.31%	7656.4	16.44%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.248e+00	0.1679	110.0	4.05%	1465.4	3.15%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-2	-5.241e+00	0.1679	1132.0	41.69%	18292.2	39.27%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-2	-5.215e+00	0.1679	447.0	16.46%	6844.0	14.69%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-5.079e+00	0.1739	185.0	6.81%	2636.6	5.66%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e-2	-5.059e+00	0.1739	289.0	10.64%	4293.4	9.22%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-2	-5.054e+00	0.1739	319.0	11.75%	4777.7	10.26%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-2	-5.051e+00	0.1739	385.0	14.18%	5848.1	12.56%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-2	-5.028e+00	0.1739	12.0	0.44%	88.3	0.19%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-2	-4.976e+00	0.1739	45.0	1.66%	519.9	1.12%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e-2	-4.888e+00	0.1805	270.0	9.94%	4003.1	8.59%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-2	-4.819e+00	0.1889	956.0	35.21%	15376.8	33.01%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-2	-4.764e+00	0.1952	113.0	4.16%	1537.5	3.30%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-2	-4.761e+00	0.1952	163.0	6.00%	2313.7	4.97%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-2	-4.739e+00	0.1952	515.0	18.97%	8016.9	17.21%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-2	-4.718e+00	0.1952	248.0	9.13%	3665.0	7.87%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-2	-4.671e+00	0.1963	412.0	15.17%	6330.7	13.59%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e-1	-4.604e+00	0.2055	263.0	9.69%	3916.8	8.41%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-1	-4.600e+00	0.2055	55.0	2.03%	675.5	1.45%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-1	-4.589e+00	0.2055	536.0	19.74%	8382.9	18.00%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-1	-4.517e+00	0.2112	182.0	6.70%	2631.0	5.65%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-1	-4.406e+00	0.2316	428.0	15.76%	6623.4	14.22%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-1	-4.396e+00	0.2316	562.0	20.70%	8839.0	18.98%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-1	-4.345e+00	0.2373	349.0	12.85%	5336.4	11.46%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-1	-4.319e+00	0.2392	284.0	10.46%	4282.3	9.19%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-1	-4.302e+00	0.2392	457.0	16.83%	7113.0	15.27%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.279e+00	0.2402	11.0	0.41%	87.0	0.19%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-1	-4.197e+00	0.2564	333.0	12.27%	5091.7	10.93%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-1	-4.193e+00	0.2564	185.0	6.81%	2703.6	5.80%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e-1	-4.124e+00	0.2668	248.0	9.13%	3719.0	7.98%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-1	-4.111e+00	0.2668	645.0	23.76%	10260.8	22.03%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-1	-4.103e+00	0.2668	58.0	2.14%	739.9	1.59%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-1	-4.094e+00	0.2668	103.0	3.79%	1422.4	3.05%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-1	-4.088e+00	0.2668	333.0	12.27%	5103.7	10.96%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e-1	-4.013e+00	0.2756	41.0	1.51%	494.4	1.06%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-1	-3.927e+00	0.2957	184.0	6.78%	2709.1	5.82%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.923e+00	0.2957	98.0	3.61%	1356.0	2.91%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-1	-3.891e+00	0.2978	190.0	7.00%	2808.7	6.03%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-3.886e+00	0.2978	529.0	19.48%	8360.8	17.95%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-3.794e+00	0.3190	426.0	15.69%	6666.7	14.31%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-1	-3.773e+00	0.3211	557.0	20.52%	8842.3	18.98%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-1	-3.663e+00	0.3534	100.0	3.68%	1402.5	3.01%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-1	-3.598e+00	0.3721	610.0	22.47%	9753.4	20.94%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-1	-3.593e+00	0.3721	489.0	18.01%	7737.1	16.61%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-1	-3.550e+00	0.3804	342.0	12.60%	5313.9	11.41%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-1	-3.550e+00	0.3804	387.0	14.25%	6054.3	13.00%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-3.527e+00	0.3804	122.0	4.49%	1756.4	3.77%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-1	-3.475e+00	0.3943	231.0	8.51%	3508.6	7.53%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-3.472e+00	0.3943	166.0	6.11%	2460.7	5.28%
SeqBias: TA-repeat	TATATATATA	1e-1	-3.428e+00	0.4029	915.0	33.70%	14916.1	32.03%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-1	-3.422e+00	0.4029	541.0	19.93%	8628.1	18.52%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-1	-3.404e+00	0.4029	167.0	6.15%	2482.1	5.33%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-3.395e+00	0.4029	589.0	21.69%	9434.0	20.26%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-1	-3.369e+00	0.4076	196.0	7.22%	2952.7	6.34%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-1	-3.356e+00	0.4081	153.0	5.64%	2262.3	4.86%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-1	-3.340e+00	0.4096	268.0	9.87%	4125.1	8.86%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-1	-3.307e+00	0.4187	212.0	7.81%	3217.1	6.91%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.288e+00	0.4219	175.0	6.45%	2621.2	5.63%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e-1	-3.275e+00	0.4226	110.0	4.05%	1585.7	3.40%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-3.268e+00	0.4226	118.0	4.35%	1712.7	3.68%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.264e+00	0.4226	92.0	3.39%	1303.3	2.80%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-3.249e+00	0.4226	288.0	10.61%	4463.7	9.58%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.247e+00	0.4226	1294.0	47.66%	21404.7	45.96%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-3.239e+00	0.4226	151.0	5.56%	2240.2	4.81%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-3.229e+00	0.4226	103.0	3.79%	1478.0	3.17%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-1	-3.199e+00	0.4232	659.0	24.27%	10640.7	22.85%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.159e+00	0.4358	22.0	0.81%	251.4	0.54%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-3.152e+00	0.4358	97.0	3.57%	1389.8	2.98%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-1	-3.134e+00	0.4381	302.0	11.12%	4707.2	10.11%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.127e+00	0.4381	1078.0	39.71%	17742.2	38.09%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e-1	-3.116e+00	0.4381	213.0	7.85%	3253.2	6.98%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-3.109e+00	0.4381	141.0	5.19%	2091.9	4.49%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.068e+00	0.4500	38.0	1.40%	486.1	1.04%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-3.003e+00	0.4756	307.0	11.31%	4806.8	10.32%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-1	-2.981e+00	0.4816	423.0	15.58%	6730.4	14.45%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-1	-2.966e+00	0.4841	359.0	13.22%	5670.4	12.17%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-2.945e+00	0.4898	278.0	10.24%	4336.3	9.31%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.913e+00	0.5013	30.0	1.10%	374.4	0.80%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-1	-2.894e+00	0.5064	1426.0	52.52%	23742.9	50.98%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-1	-2.890e+00	0.5064	388.0	14.29%	6162.1	13.23%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.884e+00	0.5064	567.0	20.88%	9151.0	19.65%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-1	-2.877e+00	0.5064	363.0	13.37%	5749.4	12.34%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-2.875e+00	0.5064	18.0	0.66%	203.8	0.44%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-2.862e+00	0.5064	79.0	2.91%	1126.2	2.42%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-1	-2.861e+00	0.5064	204.0	7.51%	3134.7	6.73%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.851e+00	0.5064	28.0	1.03%	347.2	0.75%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-1	-2.799e+00	0.5190	529.0	19.48%	8529.2	18.31%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-1	-2.779e+00	0.5251	221.0	8.14%	3421.9	7.35%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.750e+00	0.5357	238.0	8.77%	3703.5	7.95%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-2.749e+00	0.5357	235.0	8.66%	3654.9	7.85%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-1	-2.744e+00	0.5357	302.0	11.12%	4758.1	10.22%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-1	-2.704e+00	0.5473	690.0	25.41%	11253.5	24.16%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-2.686e+00	0.5531	446.0	16.43%	7160.0	15.37%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-1	-2.669e+00	0.5577	128.0	4.71%	1921.6	4.13%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-1	-2.662e+00	0.5577	256.0	9.43%	4010.5	8.61%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-2.645e+00	0.5627	604.0	22.25%	9816.5	21.08%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-1	-2.643e+00	0.5627	320.0	11.79%	5070.8	10.89%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.627e+00	0.5637	31.0	1.14%	400.6	0.86%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-2.623e+00	0.5637	616.0	22.69%	10022.6	21.52%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-2.600e+00	0.5704	364.0	13.41%	5807.4	12.47%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-2.588e+00	0.5729	45.0	1.66%	614.9	1.32%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-1	-2.587e+00	0.5729	523.0	19.26%	8466.1	18.18%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-1	-2.583e+00	0.5729	413.0	15.21%	6626.3	14.23%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-1	-2.583e+00	0.5729	433.0	15.95%	6961.0	14.95%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-2.558e+00	0.5731	192.0	7.07%	2972.1	6.38%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.543e+00	0.5773	3.0	0.11%	17.4	0.04%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.534e+00	0.5786	52.0	1.92%	725.2	1.56%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.521e+00	0.5816	249.0	9.17%	3913.5	8.40%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-1	-2.509e+00	0.5843	220.0	8.10%	3437.6	7.38%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-1	-2.508e+00	0.5843	156.0	5.75%	2390.5	5.13%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.505e+00	0.5843	274.0	10.09%	4328.2	9.29%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-2.504e+00	0.5843	108.0	3.98%	1614.9	3.47%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-1	-2.502e+00	0.5843	229.0	8.43%	3586.5	7.70%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.488e+00	0.5843	277.0	10.20%	4380.3	9.40%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e-1	-2.471e+00	0.5843	163.0	6.00%	2508.4	5.39%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-1	-2.467e+00	0.5843	266.0	9.80%	4201.6	9.02%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.439e+00	0.5931	268.0	9.87%	4238.4	9.10%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-1	-2.418e+00	0.6016	912.0	33.59%	15073.7	32.36%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.371e+00	0.6263	2553.0	94.03%	43497.6	93.39%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.359e+00	0.6298	5.0	0.18%	41.3	0.09%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e-1	-2.357e+00	0.6298	281.0	10.35%	4465.6	9.59%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.357e+00	0.6298	646.0	23.79%	10581.9	22.72%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-1	-2.337e+00	0.6309	791.0	29.13%	13038.3	27.99%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-2.332e+00	0.6309	624.0	22.98%	10215.6	21.93%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-2.291e+00	0.6522	216.0	7.96%	3399.0	7.30%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.275e+00	0.6587	43.0	1.58%	600.4	1.29%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.260e+00	0.6647	233.0	8.58%	3684.3	7.91%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.232e+00	0.6791	377.0	13.89%	6084.8	13.06%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.185e+00	0.7070	561.0	20.66%	9183.1	19.72%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-2.167e+00	0.7154	475.0	17.50%	7739.3	16.62%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.157e+00	0.7182	149.0	5.49%	2314.2	4.97%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.156e+00	0.7182	65.0	2.39%	954.9	2.05%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-2.129e+00	0.7296	318.0	11.71%	5116.2	10.98%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.114e+00	0.7363	41.0	1.51%	578.8	1.24%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-2.074e+00	0.7614	70.0	2.58%	1040.1	2.23%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.069e+00	0.7614	15.0	0.55%	184.5	0.40%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-2.067e+00	0.7614	771.0	28.40%	12762.1	27.40%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.058e+00	0.7614	1559.0	57.42%	26232.7	56.32%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.037e+00	0.7714	129.0	4.75%	2000.8	4.30%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-2.026e+00	0.7756	94.0	3.46%	1431.1	3.07%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-2.018e+00	0.7771	21.0	0.77%	275.8	0.59%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.008e+00	0.7808	218.0	8.03%	3471.9	7.45%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-2.006e+00	0.7808	272.0	10.02%	4369.7	9.38%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-2.006e+00	0.7808	161.0	5.93%	2529.3	5.43%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.989e+00	0.7824	554.0	20.41%	9107.3	19.55%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.967e+00	0.7953	40.0	1.47%	571.7	1.23%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.966e+00	0.7953	159.0	5.86%	2501.4	5.37%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.966e+00	0.7953	250.0	9.21%	4009.9	8.61%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.966e+00	0.7953	91.0	3.35%	1388.1	2.98%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.961e+00	0.7953	185.0	6.81%	2931.0	6.29%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.943e+00	0.7953	74.0	2.73%	1115.6	2.40%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.942e+00	0.7953	163.0	6.00%	2570.5	5.52%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.940e+00	0.7953	104.0	3.83%	1602.7	3.44%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.935e+00	0.7953	222.0	8.18%	3548.4	7.62%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.932e+00	0.7953	357.0	13.15%	5803.8	12.46%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.931e+00	0.7953	94.0	3.46%	1441.0	3.09%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.931e+00	0.7953	156.0	5.75%	2456.3	5.27%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.891e+00	0.8031	158.0	5.82%	2494.6	5.36%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.868e+00	0.8173	103.0	3.79%	1593.3	3.42%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-1.856e+00	0.8233	1148.0	42.28%	19241.6	41.31%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.851e+00	0.8233	131.0	4.83%	2054.2	4.41%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.851e+00	0.8233	208.0	7.66%	3328.6	7.15%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.847e+00	0.8233	314.0	11.57%	5098.6	10.95%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-1.826e+00	0.8310	177.0	6.52%	2817.9	6.05%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.811e+00	0.8388	256.0	9.43%	4134.3	8.88%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.805e+00	0.8403	2557.0	94.18%	43645.2	93.71%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.797e+00	0.8424	366.0	13.48%	5980.9	12.84%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.797e+00	0.8424	182.0	6.70%	2904.9	6.24%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.789e+00	0.8424	473.0	17.42%	7784.9	16.71%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.784e+00	0.8424	137.0	5.05%	2161.6	4.64%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.774e+00	0.8445	391.0	14.40%	6406.0	13.75%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.773e+00	0.8445	344.0	12.67%	5615.6	12.06%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.773e+00	0.8445	28.0	1.03%	394.1	0.85%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.755e+00	0.8487	67.0	2.47%	1018.2	2.19%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.743e+00	0.8549	157.0	5.78%	2497.5	5.36%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.741e+00	0.8549	153.0	5.64%	2431.4	5.22%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.737e+00	0.8549	2.0	0.07%	13.2	0.03%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.734e+00	0.8549	83.0	3.06%	1280.0	2.75%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.723e+00	0.8556	104.0	3.83%	1625.3	3.49%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-1.716e+00	0.8574	362.0	13.33%	5929.4	12.73%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-1.710e+00	0.8581	189.0	6.96%	3033.4	6.51%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.706e+00	0.8581	54.0	1.99%	813.0	1.75%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.680e+00	0.8760	182.0	6.70%	2922.0	6.27%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.678e+00	0.8760	16.0	0.59%	213.4	0.46%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.677e+00	0.8760	19.0	0.70%	259.5	0.56%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-1.669e+00	0.8760	134.0	4.94%	2126.7	4.57%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.666e+00	0.8760	53.0	1.95%	799.1	1.72%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.663e+00	0.8760	387.0	14.25%	6361.3	13.66%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-1.653e+00	0.8760	442.0	16.28%	7291.9	15.66%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.644e+00	0.8792	47.0	1.73%	705.0	1.51%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.628e+00	0.8894	305.0	11.23%	4988.6	10.71%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.616e+00	0.8963	62.0	2.28%	949.7	2.04%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.616e+00	0.8963	14.0	0.52%	185.8	0.40%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.614e+00	0.8963	349.0	12.85%	5731.6	12.31%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.605e+00	0.8963	152.0	5.60%	2433.6	5.22%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.597e+00	0.8978	35.0	1.29%	515.4	1.11%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.596e+00	0.8978	59.0	2.17%	902.3	1.94%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.592e+00	0.8978	442.0	16.28%	7305.6	15.69%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.589e+00	0.8978	303.0	11.16%	4962.5	10.65%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.585e+00	0.8978	258.0	9.50%	4207.6	9.03%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.584e+00	0.8978	13.0	0.48%	171.6	0.37%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.583e+00	0.8978	423.0	15.58%	6986.2	15.00%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.582e+00	0.8978	39.0	1.44%	580.6	1.25%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.581e+00	0.8978	296.0	10.90%	4846.4	10.41%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.572e+00	0.8978	15.0	0.55%	202.5	0.43%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.568e+00	0.8978	304.0	11.20%	4983.0	10.70%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.568e+00	0.8978	778.0	28.66%	13013.9	27.94%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.560e+00	0.8978	2703.0	99.56%	46306.7	99.42%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.555e+00	0.8978	391.0	14.40%	6452.3	13.85%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.554e+00	0.8978	120.0	4.42%	1909.1	4.10%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.525e+00	0.9042	46.0	1.69%	697.4	1.50%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.522e+00	0.9042	35.0	1.29%	520.1	1.12%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.509e+00	0.9115	110.0	4.05%	1749.1	3.76%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.503e+00	0.9136	47.0	1.73%	715.8	1.54%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.499e+00	0.9136	162.0	5.97%	2615.5	5.62%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.490e+00	0.9181	628.0	23.13%	10484.5	22.51%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-1.486e+00	0.9181	494.0	18.20%	8212.0	17.63%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.485e+00	0.9181	436.0	16.06%	7229.0	15.52%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.482e+00	0.9181	493.0	18.16%	8195.9	17.60%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.479e+00	0.9181	880.0	32.41%	14778.4	31.73%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.465e+00	0.9226	7.0	0.26%	85.5	0.18%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.465e+00	0.9226	141.0	5.19%	2270.5	4.87%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.461e+00	0.9226	559.0	20.59%	9320.9	20.01%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-1.458e+00	0.9226	1110.0	40.88%	18714.6	40.18%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.448e+00	0.9234	1377.0	50.72%	23291.6	50.01%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.448e+00	0.9234	162.0	5.97%	2623.9	5.63%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.438e+00	0.9254	309.0	11.38%	5094.0	10.94%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.436e+00	0.9254	41.0	1.51%	623.1	1.34%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.429e+00	0.9270	488.0	17.97%	8124.9	17.44%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.429e+00	0.9270	7.0	0.26%	86.2	0.19%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-1.426e+00	0.9270	415.0	15.29%	6888.8	14.79%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.424e+00	0.9270	78.0	2.87%	1230.5	2.64%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.418e+00	0.9270	401.0	14.77%	6653.8	14.29%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.417e+00	0.9270	68.0	2.50%	1066.5	2.29%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.417e+00	0.9270	88.0	3.24%	1396.2	3.00%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.417e+00	0.9270	403.0	14.84%	6687.2	14.36%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.411e+00	0.9270	408.0	15.03%	6773.0	14.54%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.411e+00	0.9270	27.0	0.99%	399.5	0.86%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.410e+00	0.9270	212.0	7.81%	3467.3	7.44%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.408e+00	0.9270	234.0	8.62%	3837.7	8.24%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.404e+00	0.9270	101.0	3.72%	1613.9	3.47%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-1.403e+00	0.9270	85.0	3.13%	1348.0	2.89%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.401e+00	0.9270	102.0	3.76%	1630.2	3.50%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.394e+00	0.9270	35.0	1.29%	529.1	1.14%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-1.386e+00	0.9270	107.0	3.94%	1715.3	3.68%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.383e+00	0.9270	44.0	1.62%	676.3	1.45%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.380e+00	0.9270	377.0	13.89%	6256.1	13.43%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.379e+00	0.9270	26.0	0.96%	385.5	0.83%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.372e+00	0.9270	140.0	5.16%	2267.3	4.87%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.370e+00	0.9270	346.0	12.74%	5734.0	12.31%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-1.368e+00	0.9270	420.0	15.47%	6987.8	15.00%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.363e+00	0.9270	21.0	0.77%	306.9	0.66%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.360e+00	0.9270	74.0	2.73%	1171.2	2.51%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.357e+00	0.9270	172.0	6.34%	2805.7	6.02%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.347e+00	0.9270	10.0	0.37%	134.1	0.29%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-1.344e+00	0.9270	169.0	6.22%	2757.8	5.92%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.335e+00	0.9270	389.0	14.33%	6470.3	13.89%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.333e+00	0.9270	27.0	0.99%	404.6	0.87%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.333e+00	0.9270	126.0	4.64%	2039.4	4.38%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.332e+00	0.9270	46.0	1.69%	713.2	1.53%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.332e+00	0.9270	60.0	2.21%	943.4	2.03%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.327e+00	0.9270	346.0	12.74%	5744.1	12.33%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.327e+00	0.9270	214.0	7.88%	3516.1	7.55%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.322e+00	0.9270	89.0	3.28%	1424.7	3.06%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.306e+00	0.9270	489.0	18.01%	8174.2	17.55%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.305e+00	0.9270	3.0	0.11%	31.4	0.07%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.296e+00	0.9270	72.0	2.65%	1145.1	2.46%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.296e+00	0.9270	87.0	3.20%	1394.4	2.99%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.296e+00	0.9270	234.0	8.62%	3859.7	8.29%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.281e+00	0.9285	555.0	20.44%	9303.2	19.97%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.274e+00	0.9320	129.0	4.75%	2099.0	4.51%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.271e+00	0.9320	194.0	7.15%	3190.2	6.85%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-1.265e+00	0.9341	385.0	14.18%	6420.4	13.78%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.254e+00	0.9409	74.0	2.73%	1183.0	2.54%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.254e+00	0.9409	151.0	5.56%	2470.0	5.30%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.240e+00	0.9480	26.0	0.96%	394.3	0.85%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.240e+00	0.9480	114.0	4.20%	1852.5	3.98%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-1.231e+00	0.9504	1078.0	39.71%	18246.3	39.18%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.231e+00	0.9504	336.0	12.38%	5598.7	12.02%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.222e+00	0.9530	388.0	14.29%	6482.9	13.92%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.219e+00	0.9530	103.0	3.79%	1671.6	3.59%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.209e+00	0.9590	97.0	3.57%	1572.5	3.38%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.207e+00	0.9590	237.0	8.73%	3928.2	8.43%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.206e+00	0.9590	152.0	5.60%	2495.7	5.36%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.204e+00	0.9590	254.0	9.36%	4216.7	9.05%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.203e+00	0.9590	18.0	0.66%	267.4	0.57%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.203e+00	0.9590	120.0	4.42%	1958.0	4.20%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.202e+00	0.9590	167.0	6.15%	2748.1	5.90%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-1.201e+00	0.9590	40.0	1.47%	626.2	1.34%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-1.194e+00	0.9590	1361.0	50.13%	23109.5	49.62%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.191e+00	0.9590	107.0	3.94%	1742.6	3.74%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.189e+00	0.9590	100.0	3.68%	1625.2	3.49%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.182e+00	0.9590	14.0	0.52%	204.6	0.44%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.180e+00	0.9590	407.0	14.99%	6816.5	14.64%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.179e+00	0.9590	237.0	8.73%	3934.5	8.45%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-1.175e+00	0.9590	89.0	3.28%	1443.5	3.10%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.155e+00	0.9661	59.0	2.17%	945.2	2.03%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.153e+00	0.9661	57.0	2.10%	912.8	1.96%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.150e+00	0.9661	9.0	0.33%	126.2	0.27%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.150e+00	0.9661	230.0	8.47%	3822.2	8.21%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-1.146e+00	0.9661	473.0	17.42%	7948.5	17.07%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.133e+00	0.9731	115.0	4.24%	1885.8	4.05%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.131e+00	0.9731	133.0	4.90%	2188.5	4.70%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.128e+00	0.9731	31.0	1.14%	484.5	1.04%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.128e+00	0.9731	31.0	1.14%	484.6	1.04%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.120e+00	0.9736	12.0	0.44%	175.8	0.38%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-1.114e+00	0.9767	78.0	2.87%	1267.8	2.72%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-1.114e+00	0.9767	287.0	10.57%	4796.8	10.30%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.113e+00	0.9767	47.0	1.73%	750.3	1.61%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-1.112e+00	0.9767	194.0	7.15%	3221.9	6.92%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.102e+00	0.9775	13.0	0.48%	192.0	0.41%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.101e+00	0.9775	288.0	10.61%	4816.0	10.34%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.095e+00	0.9782	115.0	4.24%	1891.4	4.06%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.091e+00	0.9799	92.0	3.39%	1505.3	3.23%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.089e+00	0.9799	93.0	3.43%	1522.3	3.27%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.087e+00	0.9799	85.0	3.13%	1388.9	2.98%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.069e+00	0.9922	18.0	0.66%	275.2	0.59%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.069e+00	0.9922	55.0	2.03%	888.0	1.91%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.054e+00	1.0000	137.0	5.05%	2269.9	4.87%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.048e+00	1.0000	803.0	29.58%	13612.2	29.23%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.045e+00	1.0000	109.0	4.01%	1799.0	3.86%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-1.045e+00	1.0000	445.0	16.39%	7502.9	16.11%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-1.044e+00	1.0000	888.0	32.71%	15067.5	32.35%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.043e+00	1.0000	111.0	4.09%	1832.4	3.93%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.041e+00	1.0000	68.0	2.50%	1109.6	2.38%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.039e+00	1.0000	340.0	12.52%	5716.6	12.27%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.037e+00	1.0000	98.0	3.61%	1614.5	3.47%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.031e+00	1.0000	74.0	2.73%	1211.6	2.60%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.025e+00	1.0000	152.0	5.60%	2528.8	5.43%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-1.018e+00	1.0000	158.0	5.82%	2631.7	5.65%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-1.009e+00	1.0000	456.0	16.80%	7701.6	16.54%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-1.004e+00	1.0000	428.0	15.76%	7225.6	15.51%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.002e+00	1.0000	324.0	11.93%	5454.2	11.71%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-9.961e-01	1.0000	57.0	2.10%	930.3	2.00%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-9.932e-01	1.0000	342.0	12.60%	5763.8	12.38%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-9.894e-01	1.0000	172.0	6.34%	2874.6	6.17%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-9.869e-01	1.0000	1.0	0.04%	8.6	0.02%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-9.811e-01	1.0000	129.0	4.75%	2148.0	4.61%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-9.788e-01	1.0000	179.0	6.59%	2995.9	6.43%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.741e-01	1.0000	42.0	1.55%	681.3	1.46%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-9.721e-01	1.0000	21.0	0.77%	331.1	0.71%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-9.714e-01	1.0000	301.0	11.09%	5071.3	10.89%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.695e-01	1.0000	278.0	10.24%	4680.2	10.05%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-9.678e-01	1.0000	249.0	9.17%	4187.6	8.99%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.648e-01	1.0000	9.0	0.33%	134.8	0.29%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-9.640e-01	1.0000	3.0	0.11%	38.2	0.08%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-9.612e-01	1.0000	268.0	9.87%	4512.1	9.69%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-9.590e-01	1.0000	82.0	3.02%	1356.9	2.91%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.549e-01	1.0000	202.0	7.44%	3391.3	7.28%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-9.528e-01	1.0000	91.0	3.35%	1509.8	3.24%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-9.394e-01	1.0000	764.0	28.14%	12988.4	27.89%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-9.345e-01	1.0000	156.0	5.75%	2614.2	5.61%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-9.328e-01	1.0000	280.0	10.31%	4724.1	10.14%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-9.301e-01	1.0000	384.0	14.14%	6498.2	13.95%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.202e-01	1.0000	114.0	4.20%	1904.1	4.09%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-9.150e-01	1.0000	22.0	0.81%	352.3	0.76%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-9.091e-01	1.0000	77.0	2.84%	1279.1	2.75%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-9.065e-01	1.0000	141.0	5.19%	2365.1	5.08%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.048e-01	1.0000	25.0	0.92%	403.6	0.87%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.925e-01	1.0000	5.0	0.18%	72.4	0.16%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-8.817e-01	1.0000	186.0	6.85%	3136.7	6.73%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-8.784e-01	1.0000	192.0	7.07%	3239.6	6.96%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-8.724e-01	1.0000	8.0	0.29%	122.8	0.26%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-8.672e-01	1.0000	133.0	4.90%	2238.0	4.80%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.670e-01	1.0000	130.0	4.79%	2186.3	4.69%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.668e-01	1.0000	100.0	3.68%	1676.4	3.60%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.620e-01	1.0000	15.0	0.55%	239.6	0.51%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.530e-01	1.0000	359.0	13.22%	6096.8	13.09%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.527e-01	1.0000	255.0	9.39%	4320.3	9.28%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-8.474e-01	1.0000	217.0	7.99%	3673.7	7.89%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-8.396e-01	1.0000	66.0	2.43%	1103.8	2.37%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.391e-01	1.0000	229.0	8.43%	3880.8	8.33%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.388e-01	1.0000	5.0	0.18%	74.9	0.16%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.364e-01	1.0000	14.0	0.52%	224.3	0.48%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-8.340e-01	1.0000	103.0	3.79%	1733.6	3.72%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-8.291e-01	1.0000	48.0	1.77%	799.1	1.72%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-8.261e-01	1.0000	36.0	1.33%	596.3	1.28%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.251e-01	1.0000	426.0	15.69%	7251.1	15.57%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-8.212e-01	1.0000	616.0	22.69%	10504.9	22.55%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.208e-01	1.0000	85.0	3.13%	1429.3	3.07%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-8.170e-01	1.0000	1.0	0.04%	11.0	0.02%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-8.132e-01	1.0000	70.0	2.58%	1175.4	2.52%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-8.106e-01	1.0000	231.0	8.51%	3922.6	8.42%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-8.105e-01	1.0000	571.0	21.03%	9738.4	20.91%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-8.101e-01	1.0000	179.0	6.59%	3034.4	6.52%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-8.091e-01	1.0000	238.0	8.77%	4042.7	8.68%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-8.083e-01	1.0000	80.0	2.95%	1346.9	2.89%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-7.976e-01	1.0000	7.0	0.26%	109.4	0.23%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.966e-01	1.0000	119.0	4.38%	2013.6	4.32%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.939e-01	1.0000	532.0	19.59%	9077.0	19.49%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.937e-01	1.0000	67.0	2.47%	1128.0	2.42%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-7.928e-01	1.0000	8.0	0.29%	126.7	0.27%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-7.925e-01	1.0000	281.0	10.35%	4782.1	10.27%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-7.882e-01	1.0000	5.0	0.18%	76.5	0.16%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.846e-01	1.0000	1246.0	45.89%	21318.6	45.77%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-7.844e-01	1.0000	217.0	7.99%	3690.3	7.92%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-7.830e-01	1.0000	74.0	2.73%	1248.6	2.68%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-7.708e-01	1.0000	159.0	5.86%	2702.6	5.80%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-7.682e-01	1.0000	795.0	29.28%	13595.0	29.19%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.680e-01	1.0000	230.0	8.47%	3917.1	8.41%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-7.669e-01	1.0000	298.0	10.98%	5081.3	10.91%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-7.666e-01	1.0000	217.0	7.99%	3695.9	7.94%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-7.649e-01	1.0000	240.0	8.84%	4089.9	8.78%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-7.637e-01	1.0000	356.0	13.11%	6075.2	13.04%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.601e-01	1.0000	288.0	10.61%	4912.8	10.55%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-7.515e-01	1.0000	143.0	5.27%	2433.6	5.22%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-7.436e-01	1.0000	237.0	8.73%	4044.4	8.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.386e-01	1.0000	16.0	0.59%	265.9	0.57%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.371e-01	1.0000	95.0	3.50%	1615.6	3.47%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-7.125e-01	1.0000	198.0	7.29%	3385.7	7.27%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.121e-01	1.0000	57.0	2.10%	969.7	2.08%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-7.105e-01	1.0000	55.0	2.03%	935.1	2.01%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.100e-01	1.0000	22.0	0.81%	370.4	0.80%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.058e-01	1.0000	240.0	8.84%	4107.3	8.82%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-7.034e-01	1.0000	118.0	4.35%	2017.0	4.33%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-7.006e-01	1.0000	93.0	3.43%	1588.6	3.41%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-7.006e-01	1.0000	715.0	26.34%	12255.9	26.31%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-6.991e-01	1.0000	565.0	20.81%	9683.0	20.79%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-6.911e-01	1.0000	665.0	24.49%	11402.0	24.48%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.902e-01	1.0000	16.0	0.59%	269.5	0.58%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.860e-01	1.0000	56.0	2.06%	956.4	2.05%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-6.845e-01	1.0000	305.0	11.23%	5229.7	11.23%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.802e-01	1.0000	233.0	8.58%	3995.5	8.58%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.782e-01	1.0000	32.0	1.18%	545.6	1.17%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-6.764e-01	1.0000	349.0	12.85%	5987.9	12.86%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-6.753e-01	1.0000	591.0	21.77%	10140.7	21.77%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.674e-01	1.0000	197.0	7.26%	3381.4	7.26%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-6.665e-01	1.0000	2707.0	99.71%	46429.4	99.69%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-6.571e-01	1.0000	152.0	5.60%	2611.8	5.61%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.566e-01	1.0000	67.0	2.47%	1150.9	2.47%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.506e-01	1.0000	26.0	0.96%	445.5	0.96%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-6.478e-01	1.0000	554.0	20.41%	9518.4	20.44%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.476e-01	1.0000	37.0	1.36%	635.8	1.37%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.474e-01	1.0000	423.0	15.58%	7269.1	15.61%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-6.446e-01	1.0000	145.0	5.34%	2494.4	5.36%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-6.439e-01	1.0000	170.0	6.26%	2924.0	6.28%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-6.405e-01	1.0000	54.0	1.99%	930.0	2.00%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-6.356e-01	1.0000	163.0	6.00%	2806.0	6.02%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-6.325e-01	1.0000	101.0	3.72%	1740.3	3.74%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.307e-01	1.0000	25.0	0.92%	430.3	0.92%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.298e-01	1.0000	15.0	0.55%	257.6	0.55%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-6.280e-01	1.0000	202.0	7.44%	3479.6	7.47%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.242e-01	1.0000	59.0	2.17%	1018.7	2.19%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.222e-01	1.0000	188.0	6.92%	3240.4	6.96%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.215e-01	1.0000	187.0	6.89%	3223.1	6.92%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-6.200e-01	1.0000	68.0	2.50%	1174.4	2.52%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.163e-01	1.0000	20.0	0.74%	345.5	0.74%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.143e-01	1.0000	7.0	0.26%	119.3	0.26%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.111e-01	1.0000	73.0	2.69%	1263.0	2.71%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.110e-01	1.0000	522.0	19.23%	8986.8	19.29%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.056e-01	1.0000	6.0	0.22%	102.4	0.22%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.051e-01	1.0000	155.0	5.71%	2677.1	5.75%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-6.048e-01	1.0000	177.0	6.52%	3056.8	6.56%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.021e-01	1.0000	262.0	9.65%	4520.6	9.71%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-6.012e-01	1.0000	133.0	4.90%	2299.7	4.94%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-6.011e-01	1.0000	112.0	4.13%	1937.6	4.16%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.986e-01	1.0000	57.0	2.10%	988.6	2.12%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-5.978e-01	1.0000	172.0	6.34%	2972.6	6.38%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-5.915e-01	1.0000	461.0	16.98%	7947.8	17.06%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-5.913e-01	1.0000	185.0	6.81%	3198.3	6.87%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-5.890e-01	1.0000	523.0	19.26%	9014.1	19.35%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-5.883e-01	1.0000	696.0	25.64%	11987.3	25.74%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-5.863e-01	1.0000	2.0	0.07%	32.0	0.07%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-5.844e-01	1.0000	159.0	5.86%	2752.6	5.91%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.827e-01	1.0000	7.0	0.26%	121.2	0.26%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-5.810e-01	1.0000	14.0	0.52%	244.3	0.52%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.808e-01	1.0000	12.0	0.44%	209.2	0.45%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-5.782e-01	1.0000	258.0	9.50%	4460.7	9.58%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-5.773e-01	1.0000	87.0	3.20%	1511.5	3.25%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.763e-01	1.0000	5.0	0.18%	87.0	0.19%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.754e-01	1.0000	17.0	0.63%	297.8	0.64%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-5.721e-01	1.0000	320.0	11.79%	5530.5	11.87%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-5.706e-01	1.0000	345.0	12.71%	5961.5	12.80%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-5.624e-01	1.0000	73.0	2.69%	1272.1	2.73%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-5.621e-01	1.0000	55.0	2.03%	960.8	2.06%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-5.545e-01	1.0000	144.0	5.30%	2502.3	5.37%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-5.543e-01	1.0000	185.0	6.81%	3210.8	6.89%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-5.541e-01	1.0000	270.0	9.94%	4676.5	10.04%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.515e-01	1.0000	159.0	5.86%	2762.5	5.93%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-5.489e-01	1.0000	576.0	21.22%	9946.8	21.36%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-5.488e-01	1.0000	278.0	10.24%	4816.2	10.34%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.475e-01	1.0000	29.0	1.07%	510.5	1.10%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-5.441e-01	1.0000	28.0	1.03%	493.8	1.06%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-5.411e-01	1.0000	16.0	0.59%	283.8	0.61%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.384e-01	1.0000	67.0	2.47%	1173.9	2.52%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.371e-01	1.0000	86.0	3.17%	1503.5	3.23%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-5.340e-01	1.0000	81.0	2.98%	1417.1	3.04%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-5.338e-01	1.0000	474.0	17.46%	8199.7	17.60%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-5.280e-01	1.0000	329.0	12.12%	5704.3	12.25%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-5.279e-01	1.0000	97.0	3.57%	1696.1	3.64%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.274e-01	1.0000	11.0	0.41%	196.7	0.42%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.274e-01	1.0000	11.0	0.41%	196.7	0.42%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-5.265e-01	1.0000	187.0	6.89%	3254.0	6.99%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-5.245e-01	1.0000	75.0	2.76%	1315.4	2.82%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-5.218e-01	1.0000	562.0	20.70%	9720.3	20.87%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-5.214e-01	1.0000	371.0	13.66%	6431.2	13.81%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-5.186e-01	1.0000	1359.0	50.06%	23413.7	50.27%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-5.134e-01	1.0000	130.0	4.79%	2272.4	4.88%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-5.132e-01	1.0000	766.0	28.21%	13235.0	28.42%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-5.108e-01	1.0000	220.0	8.10%	3830.7	8.22%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.106e-01	1.0000	93.0	3.43%	1631.4	3.50%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-5.092e-01	1.0000	243.0	8.95%	4228.7	9.08%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-5.006e-01	1.0000	116.0	4.27%	2033.1	4.37%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-4.990e-01	1.0000	364.0	13.41%	6321.1	13.57%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-4.978e-01	1.0000	440.0	16.21%	7632.7	16.39%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-4.966e-01	1.0000	999.0	36.80%	17250.0	37.04%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.905e-01	1.0000	32.0	1.18%	571.7	1.23%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.899e-01	1.0000	87.0	3.20%	1532.3	3.29%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.894e-01	1.0000	209.0	7.70%	3648.6	7.83%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-4.882e-01	1.0000	48.0	1.77%	852.0	1.83%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-4.874e-01	1.0000	442.0	16.28%	7672.8	16.47%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.844e-01	1.0000	63.0	2.32%	1115.2	2.39%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-4.832e-01	1.0000	7.0	0.26%	128.1	0.27%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-4.813e-01	1.0000	168.0	6.19%	2941.9	6.32%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.808e-01	1.0000	144.0	5.30%	2525.8	5.42%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-4.781e-01	1.0000	58.0	2.14%	1029.2	2.21%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-4.749e-01	1.0000	625.0	23.02%	10833.0	23.26%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-4.730e-01	1.0000	183.0	6.74%	3205.0	6.88%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-4.715e-01	1.0000	620.0	22.84%	10748.1	23.08%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.702e-01	1.0000	47.0	1.73%	839.0	1.80%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-4.676e-01	1.0000	509.0	18.75%	8838.2	18.98%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-4.667e-01	1.0000	571.0	21.03%	9907.8	21.27%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e0	-4.637e-01	1.0000	280.0	10.31%	4887.2	10.49%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-4.613e-01	1.0000	659.0	24.27%	11426.5	24.53%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.577e-01	1.0000	71.0	2.62%	1261.9	2.71%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-4.526e-01	1.0000	26.0	0.96%	471.6	1.01%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-4.516e-01	1.0000	322.0	11.86%	5619.8	12.07%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-4.455e-01	1.0000	7.0	0.26%	131.9	0.28%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-4.453e-01	1.0000	541.0	19.93%	9403.7	20.19%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-4.431e-01	1.0000	132.0	4.86%	2329.2	5.00%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-4.423e-01	1.0000	10.0	0.37%	186.2	0.40%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.408e-01	1.0000	145.0	5.34%	2556.3	5.49%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.404e-01	1.0000	6.0	0.22%	113.1	0.24%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.404e-01	1.0000	6.0	0.22%	113.1	0.24%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-4.378e-01	1.0000	100.0	3.68%	1773.8	3.81%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-4.376e-01	1.0000	8.0	0.29%	150.9	0.32%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-4.307e-01	1.0000	227.0	8.36%	3984.4	8.55%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.269e-01	1.0000	81.0	2.98%	1444.4	3.10%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-4.241e-01	1.0000	643.0	23.68%	11175.5	23.99%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-4.225e-01	1.0000	171.0	6.30%	3015.5	6.47%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-4.194e-01	1.0000	250.0	9.21%	4388.0	9.42%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-4.149e-01	1.0000	189.0	6.96%	3331.5	7.15%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.146e-01	1.0000	104.0	3.83%	1850.8	3.97%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.113e-01	1.0000	34.0	1.25%	620.9	1.33%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-4.105e-01	1.0000	7.0	0.26%	134.8	0.29%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.102e-01	1.0000	425.0	15.65%	7422.5	15.94%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.077e-01	1.0000	372.0	13.70%	6507.1	13.97%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-4.032e-01	1.0000	6.0	0.22%	116.4	0.25%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-4.024e-01	1.0000	233.0	8.58%	4102.0	8.81%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-4.020e-01	1.0000	129.0	4.75%	2292.0	4.92%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.012e-01	1.0000	38.0	1.40%	693.4	1.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.992e-01	1.0000	163.0	6.00%	2885.2	6.19%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-3.962e-01	1.0000	131.0	4.83%	2328.9	5.00%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-3.951e-01	1.0000	39.0	1.44%	712.1	1.53%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-3.939e-01	1.0000	40.0	1.47%	730.6	1.57%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-3.927e-01	1.0000	660.0	24.31%	11491.0	24.67%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.923e-01	1.0000	94.0	3.46%	1682.5	3.61%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.922e-01	1.0000	32.0	1.18%	588.3	1.26%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.873e-01	1.0000	3.0	0.11%	60.8	0.13%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-3.860e-01	1.0000	336.0	12.38%	5896.6	12.66%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-3.853e-01	1.0000	54.0	1.99%	980.9	2.11%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-3.816e-01	1.0000	114.0	4.20%	2036.3	4.37%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-3.789e-01	1.0000	126.0	4.64%	2247.5	4.83%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.749e-01	1.0000	56.0	2.06%	1018.2	2.19%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-3.743e-01	1.0000	84.0	3.09%	1512.0	3.25%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.730e-01	1.0000	85.0	3.13%	1530.8	3.29%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-3.719e-01	1.0000	829.0	30.53%	14418.1	30.96%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.718e-01	1.0000	2.0	0.07%	41.6	0.09%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.701e-01	1.0000	17.0	0.63%	322.1	0.69%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.680e-01	1.0000	23.0	0.85%	431.1	0.93%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-3.674e-01	1.0000	167.0	6.15%	2968.0	6.37%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.670e-01	1.0000	171.0	6.30%	3038.9	6.52%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-3.652e-01	1.0000	150.0	5.52%	2672.3	5.74%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.652e-01	1.0000	118.0	4.35%	2112.3	4.54%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.649e-01	1.0000	58.0	2.14%	1056.5	2.27%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-3.647e-01	1.0000	18.0	0.66%	341.4	0.73%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-3.637e-01	1.0000	43.0	1.58%	790.1	1.70%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-3.616e-01	1.0000	371.0	13.66%	6517.2	13.99%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-3.606e-01	1.0000	242.0	8.91%	4278.2	9.19%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-3.606e-01	1.0000	130.0	4.79%	2324.9	4.99%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.568e-01	1.0000	17.0	0.63%	324.2	0.70%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.541e-01	1.0000	320.0	11.79%	5637.5	12.10%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.537e-01	1.0000	2.0	0.07%	42.7	0.09%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-3.521e-01	1.0000	287.0	10.57%	5065.9	10.88%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-3.521e-01	1.0000	196.0	7.22%	3481.0	7.47%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.448e-01	1.0000	9.0	0.33%	178.8	0.38%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-3.438e-01	1.0000	12.0	0.44%	234.7	0.50%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-3.427e-01	1.0000	110.0	4.05%	1980.7	4.25%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-3.402e-01	1.0000	311.0	11.45%	5489.7	11.79%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.394e-01	1.0000	232.0	8.55%	4115.2	8.84%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-3.391e-01	1.0000	42.0	1.55%	778.8	1.67%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.380e-01	1.0000	259.0	9.54%	4586.5	9.85%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-3.371e-01	1.0000	36.0	1.33%	671.8	1.44%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.368e-01	1.0000	129.0	4.75%	2316.6	4.97%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-3.368e-01	1.0000	250.0	9.21%	4430.3	9.51%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.363e-01	1.0000	337.0	12.41%	5943.6	12.76%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-3.331e-01	1.0000	598.0	22.03%	10465.6	22.47%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-3.330e-01	1.0000	34.0	1.25%	636.9	1.37%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-3.325e-01	1.0000	182.0	6.70%	3246.5	6.97%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-3.322e-01	1.0000	314.0	11.57%	5546.5	11.91%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-3.292e-01	1.0000	204.0	7.51%	3632.6	7.80%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.215e-01	1.0000	18.0	0.66%	348.1	0.75%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-3.199e-01	1.0000	198.0	7.29%	3533.0	7.59%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-3.175e-01	1.0000	80.0	2.95%	1460.3	3.14%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-3.163e-01	1.0000	4.0	0.15%	85.2	0.18%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-3.116e-01	1.0000	479.0	17.64%	8423.1	18.08%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-3.091e-01	1.0000	126.0	4.64%	2275.4	4.89%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-3.081e-01	1.0000	686.0	25.27%	12006.4	25.78%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.065e-01	1.0000	182.0	6.70%	3259.2	7.00%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-3.056e-01	1.0000	1060.0	39.04%	18454.0	39.62%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-3.032e-01	1.0000	1.0	0.04%	23.1	0.05%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.026e-01	1.0000	3.0	0.11%	66.7	0.14%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-3.024e-01	1.0000	174.0	6.41%	3121.3	6.70%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-3.018e-01	1.0000	549.0	20.22%	9643.2	20.70%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-3.009e-01	1.0000	167.0	6.15%	2999.8	6.44%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-3.009e-01	1.0000	25.0	0.92%	480.4	1.03%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.002e-01	1.0000	303.0	11.16%	5375.4	11.54%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-3.000e-01	1.0000	126.0	4.64%	2279.2	4.89%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.991e-01	1.0000	6.0	0.22%	126.5	0.27%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.990e-01	1.0000	380.0	14.00%	6715.5	14.42%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-2.989e-01	1.0000	343.0	12.63%	6072.9	13.04%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-2.957e-01	1.0000	303.0	11.16%	5378.2	11.55%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.941e-01	1.0000	33.0	1.22%	627.0	1.35%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.904e-01	1.0000	3.0	0.11%	67.8	0.15%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.891e-01	1.0000	193.0	7.11%	3461.3	7.43%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.881e-01	1.0000	8.0	0.29%	166.6	0.36%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.870e-01	1.0000	84.0	3.09%	1542.2	3.31%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.842e-01	1.0000	109.0	4.01%	1986.6	4.27%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-2.834e-01	1.0000	721.0	26.56%	12633.8	27.13%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-2.827e-01	1.0000	2710.0	99.82%	46504.6	99.85%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.819e-01	1.0000	140.0	5.16%	2534.1	5.44%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.773e-01	1.0000	245.0	9.02%	4378.5	9.40%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-2.770e-01	1.0000	421.0	15.51%	7444.2	15.98%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-2.749e-01	1.0000	13.0	0.48%	263.5	0.57%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.735e-01	1.0000	25.0	0.92%	486.4	1.04%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-2.726e-01	1.0000	119.0	4.38%	2168.1	4.65%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-2.715e-01	1.0000	356.0	13.11%	6318.9	13.57%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.715e-01	1.0000	30.0	1.10%	578.7	1.24%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-2.699e-01	1.0000	427.0	15.73%	7554.9	16.22%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.673e-01	1.0000	236.0	8.69%	4227.3	9.08%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.664e-01	1.0000	33.0	1.22%	634.6	1.36%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.641e-01	1.0000	89.0	3.28%	1640.2	3.52%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.626e-01	1.0000	647.0	23.83%	11374.3	24.42%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.625e-01	1.0000	168.0	6.19%	3037.0	6.52%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-2.621e-01	1.0000	214.0	7.88%	3845.0	8.26%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-2.595e-01	1.0000	307.0	11.31%	5473.4	11.75%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-2.566e-01	1.0000	3.0	0.11%	70.7	0.15%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-2.565e-01	1.0000	50.0	1.84%	945.4	2.03%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.542e-01	1.0000	461.0	16.98%	8158.0	17.52%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-2.526e-01	1.0000	34.0	1.25%	656.0	1.41%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-2.493e-01	1.0000	172.0	6.34%	3115.7	6.69%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.486e-01	1.0000	5.0	0.18%	112.2	0.24%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.476e-01	1.0000	7.0	0.26%	152.1	0.33%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-2.476e-01	1.0000	139.0	5.12%	2534.6	5.44%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.476e-01	1.0000	232.0	8.55%	4170.0	8.95%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.464e-01	1.0000	19.0	0.70%	381.7	0.82%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.454e-01	1.0000	183.0	6.74%	3311.0	7.11%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.434e-01	1.0000	32.0	1.18%	622.4	1.34%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.420e-01	1.0000	34.0	1.25%	660.0	1.42%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.415e-01	1.0000	6.0	0.22%	133.5	0.29%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-2.408e-01	1.0000	138.0	5.08%	2520.2	5.41%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.398e-01	1.0000	260.0	9.58%	4666.2	10.02%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-2.380e-01	1.0000	146.0	5.38%	2663.7	5.72%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.362e-01	1.0000	661.0	24.35%	11643.2	25.00%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.343e-01	1.0000	26.0	0.96%	514.3	1.10%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.336e-01	1.0000	30.0	1.10%	588.4	1.26%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.328e-01	1.0000	79.0	2.91%	1475.2	3.17%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-2.322e-01	1.0000	134.0	4.94%	2454.4	5.27%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-2.309e-01	1.0000	2705.0	99.63%	46435.9	99.70%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-2.298e-01	1.0000	62.0	2.28%	1171.9	2.52%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.266e-01	1.0000	30.0	1.10%	590.6	1.27%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-2.248e-01	1.0000	40.0	1.47%	774.4	1.66%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.245e-01	1.0000	19.0	0.70%	386.9	0.83%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-2.210e-01	1.0000	10.0	0.37%	215.5	0.46%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-2.210e-01	1.0000	18.0	0.66%	368.3	0.79%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-2.201e-01	1.0000	449.0	16.54%	7981.5	17.14%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.197e-01	1.0000	8.0	0.29%	176.7	0.38%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-2.183e-01	1.0000	1004.0	36.98%	17586.1	37.76%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.171e-01	1.0000	352.0	12.97%	6293.6	13.51%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-2.170e-01	1.0000	125.0	4.60%	2303.2	4.95%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-2.130e-01	1.0000	92.0	3.39%	1717.4	3.69%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.127e-01	1.0000	15.0	0.55%	313.8	0.67%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-2.112e-01	1.0000	33.0	1.22%	650.8	1.40%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.100e-01	1.0000	205.0	7.55%	3723.0	7.99%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.087e-01	1.0000	17.0	0.63%	352.2	0.76%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.087e-01	1.0000	17.0	0.63%	352.2	0.76%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-2.083e-01	1.0000	31.0	1.14%	614.1	1.32%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.060e-01	1.0000	36.0	1.33%	708.0	1.52%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.042e-01	1.0000	165.0	6.08%	3020.1	6.48%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-2.002e-01	1.0000	150.0	5.52%	2757.2	5.92%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.000e-01	1.0000	453.0	16.69%	8071.4	17.33%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.995e-01	1.0000	202.0	7.44%	3677.9	7.90%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.990e-01	1.0000	22.0	0.81%	449.8	0.97%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.988e-01	1.0000	26.0	0.96%	524.0	1.13%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-1.966e-01	1.0000	216.0	7.96%	3926.2	8.43%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.933e-01	1.0000	418.0	15.40%	7469.0	16.04%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.931e-01	1.0000	193.0	7.11%	3523.8	7.57%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.883e-01	1.0000	270.0	9.94%	4883.9	10.49%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-1.882e-01	1.0000	463.0	17.05%	8258.7	17.73%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-1.869e-01	1.0000	712.0	26.22%	12585.0	27.02%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-1.851e-01	1.0000	1287.0	47.40%	22498.9	48.31%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.849e-01	1.0000	122.0	4.49%	2269.8	4.87%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.836e-01	1.0000	254.0	9.36%	4606.5	9.89%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.822e-01	1.0000	113.0	4.16%	2110.8	4.53%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.806e-01	1.0000	10.0	0.37%	223.2	0.48%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.802e-01	1.0000	13.0	0.48%	282.1	0.61%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-1.802e-01	1.0000	339.0	12.49%	6101.8	13.10%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-1.802e-01	1.0000	32.0	1.18%	642.4	1.38%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.784e-01	1.0000	687.0	25.30%	12162.2	26.11%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.780e-01	1.0000	12.0	0.44%	263.9	0.57%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.776e-01	1.0000	17.0	0.63%	360.1	0.77%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.763e-01	1.0000	110.0	4.05%	2060.6	4.42%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.751e-01	1.0000	11.0	0.41%	244.8	0.53%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.730e-01	1.0000	42.0	1.55%	830.4	1.78%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.716e-01	1.0000	5.0	0.18%	123.5	0.27%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.694e-01	1.0000	3.0	0.11%	80.1	0.17%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.693e-01	1.0000	200.0	7.37%	3667.0	7.87%
Tal1	CATCTG	1e0	-1.687e-01	1.0000	214.0	7.88%	3914.2	8.40%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.686e-01	1.0000	56.0	2.06%	1089.5	2.34%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-1.682e-01	1.0000	478.0	17.61%	8543.1	18.34%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-1.667e-01	1.0000	149.0	5.49%	2763.3	5.93%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.640e-01	1.0000	429.0	15.80%	7693.1	16.52%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.639e-01	1.0000	132.0	4.86%	2462.3	5.29%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.638e-01	1.0000	393.0	14.48%	7064.3	15.17%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-1.635e-01	1.0000	637.0	23.46%	11315.4	24.29%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.598e-01	1.0000	244.0	8.99%	4453.0	9.56%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.578e-01	1.0000	1.0	0.04%	33.0	0.07%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.569e-01	1.0000	210.0	7.73%	3854.9	8.28%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-1.546e-01	1.0000	389.0	14.33%	7005.9	15.04%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.504e-01	1.0000	286.0	10.53%	5202.2	11.17%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.482e-01	1.0000	519.0	19.12%	9285.0	19.94%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.468e-01	1.0000	700.0	25.78%	12434.0	26.70%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.459e-01	1.0000	154.0	5.67%	2870.0	6.16%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.458e-01	1.0000	4.0	0.15%	106.9	0.23%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.445e-01	1.0000	5.0	0.18%	128.2	0.28%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.443e-01	1.0000	102.0	3.76%	1938.5	4.16%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-1.423e-01	1.0000	32.0	1.18%	657.6	1.41%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.414e-01	1.0000	58.0	2.14%	1140.4	2.45%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-1.413e-01	1.0000	6.0	0.22%	150.1	0.32%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-1.398e-01	1.0000	688.0	25.34%	12236.1	26.27%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.396e-01	1.0000	5.0	0.18%	129.7	0.28%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.377e-01	1.0000	279.0	10.28%	5093.3	10.94%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.377e-01	1.0000	544.0	20.04%	9735.7	20.90%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.370e-01	1.0000	34.0	1.25%	697.9	1.50%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.326e-01	1.0000	2.0	0.07%	62.6	0.13%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.314e-01	1.0000	437.0	16.10%	7877.0	16.91%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.297e-01	1.0000	772.0	28.43%	13710.8	29.44%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.269e-01	1.0000	13.0	0.48%	297.1	0.64%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-1.263e-01	1.0000	95.0	3.50%	1825.4	3.92%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.262e-01	1.0000	2.0	0.07%	63.7	0.14%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.258e-01	1.0000	148.0	5.45%	2780.7	5.97%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.258e-01	1.0000	51.0	1.88%	1020.6	2.19%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.250e-01	1.0000	45.0	1.66%	909.9	1.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.242e-01	1.0000	55.0	2.03%	1095.7	2.35%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.234e-01	1.0000	152.0	5.60%	2854.0	6.13%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.230e-01	1.0000	28.0	1.03%	590.4	1.27%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.225e-01	1.0000	89.0	3.28%	1719.4	3.69%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.223e-01	1.0000	114.0	4.20%	2172.9	4.67%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-1.204e-01	1.0000	97.0	3.57%	1866.8	4.01%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.197e-01	1.0000	221.0	8.14%	4088.8	8.78%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.167e-01	1.0000	91.0	3.35%	1760.6	3.78%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.156e-01	1.0000	284.0	10.46%	5209.6	11.19%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-1.156e-01	1.0000	197.0	7.26%	3666.2	7.87%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-1.153e-01	1.0000	13.0	0.48%	301.4	0.65%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.152e-01	1.0000	15.0	0.55%	341.0	0.73%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.138e-01	1.0000	171.0	6.30%	3204.6	6.88%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.118e-01	1.0000	181.0	6.67%	3385.7	7.27%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.094e-01	1.0000	79.0	2.91%	1547.8	3.32%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.093e-01	1.0000	160.0	5.89%	3012.6	6.47%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.093e-01	1.0000	59.0	2.17%	1179.8	2.53%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.084e-01	1.0000	188.0	6.92%	3514.6	7.55%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.083e-01	1.0000	11.0	0.41%	263.3	0.57%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.072e-01	1.0000	130.0	4.79%	2475.7	5.32%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-1.055e-01	1.0000	165.0	6.08%	3106.4	6.67%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.054e-01	1.0000	88.0	3.24%	1715.3	3.68%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.026e-01	1.0000	65.0	2.39%	1295.3	2.78%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-1.022e-01	1.0000	97.0	3.57%	1882.9	4.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.022e-01	1.0000	211.0	7.77%	3932.1	8.44%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-1.009e-01	1.0000	38.0	1.40%	793.0	1.70%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-9.953e-02	1.0000	355.0	13.08%	6486.2	13.93%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-9.902e-02	1.0000	53.0	1.95%	1075.3	2.31%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-9.872e-02	1.0000	47.0	1.73%	963.0	2.07%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-9.780e-02	1.0000	14.0	0.52%	328.0	0.70%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-9.770e-02	1.0000	39.0	1.44%	813.2	1.75%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-9.676e-02	1.0000	105.0	3.87%	2033.9	4.37%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-9.512e-02	1.0000	301.0	11.09%	5540.8	11.90%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-9.487e-02	1.0000	433.0	15.95%	7866.4	16.89%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-9.420e-02	1.0000	32.0	1.18%	682.9	1.47%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-9.347e-02	1.0000	1160.0	42.73%	20488.2	43.99%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-9.342e-02	1.0000	414.0	15.25%	7535.6	16.18%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.276e-02	1.0000	83.0	3.06%	1635.5	3.51%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-9.172e-02	1.0000	130.0	4.79%	2492.3	5.35%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-9.078e-02	1.0000	455.0	16.76%	8260.7	17.74%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.076e-02	1.0000	25.0	0.92%	549.5	1.18%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-9.006e-02	1.0000	11.0	0.41%	270.7	0.58%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.960e-02	1.0000	2.0	0.07%	70.0	0.15%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-8.884e-02	1.0000	14.0	0.52%	332.0	0.71%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-8.814e-02	1.0000	26.0	0.96%	570.7	1.23%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-8.778e-02	1.0000	773.0	28.47%	13814.9	29.66%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-8.774e-02	1.0000	650.0	23.94%	11675.8	25.07%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-8.647e-02	1.0000	59.0	2.17%	1197.7	2.57%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.609e-02	1.0000	42.0	1.55%	878.5	1.89%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-8.571e-02	1.0000	25.0	0.92%	552.6	1.19%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-8.524e-02	1.0000	15.0	0.55%	354.6	0.76%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-8.458e-02	1.0000	145.0	5.34%	2772.2	5.95%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-8.395e-02	1.0000	53.0	1.95%	1087.8	2.34%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-8.314e-02	1.0000	402.0	14.81%	7344.4	15.77%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-8.309e-02	1.0000	59.0	2.17%	1200.3	2.58%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-8.161e-02	1.0000	96.0	3.54%	1885.8	4.05%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.021e-02	1.0000	269.0	9.91%	4998.5	10.73%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-7.903e-02	1.0000	357.0	13.15%	6559.0	14.08%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.667e-02	1.0000	169.0	6.22%	3216.3	6.91%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-7.563e-02	1.0000	122.0	4.49%	2367.0	5.08%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-7.501e-02	1.0000	35.0	1.29%	753.1	1.62%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-7.362e-02	1.0000	2.0	0.07%	74.1	0.16%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-7.351e-02	1.0000	297.0	10.94%	5508.3	11.83%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.254e-02	1.0000	55.0	2.03%	1135.2	2.44%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-7.185e-02	1.0000	200.0	7.37%	3781.2	8.12%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.082e-02	1.0000	1.0	0.04%	46.1	0.10%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.082e-02	1.0000	1.0	0.04%	46.7	0.10%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-7.017e-02	1.0000	13.0	0.48%	321.6	0.69%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.783e-02	1.0000	243.0	8.95%	4559.0	9.79%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-6.668e-02	1.0000	128.0	4.71%	2489.2	5.34%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-6.527e-02	1.0000	49.0	1.80%	1029.6	2.21%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-6.461e-02	1.0000	20.0	0.74%	467.4	1.00%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-6.442e-02	1.0000	39.0	1.44%	839.5	1.80%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-6.388e-02	1.0000	9.0	0.33%	240.7	0.52%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.274e-02	1.0000	521.0	19.19%	9484.1	20.36%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-6.247e-02	1.0000	8.0	0.29%	219.5	0.47%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-6.237e-02	1.0000	47.0	1.73%	994.6	2.14%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.055e-02	1.0000	192.0	7.07%	3658.4	7.85%
 Ik-1	NHTTGGGAATRCC	1e0	-5.829e-02	1.0000	2715.0	100.00%	46576.1	100.00%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.783e-02	1.0000	79.0	2.91%	1601.2	3.44%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.533e-02	1.0000	4.0	0.15%	131.0	0.28%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-5.533e-02	1.0000	369.0	13.59%	6828.0	14.66%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-5.459e-02	1.0000	24.0	0.88%	555.3	1.19%
SeqBias: CA-repeat	CACACACACA	1e0	-5.147e-02	1.0000	1201.0	44.24%	21327.0	45.79%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.142e-02	1.0000	231.0	8.51%	4379.6	9.40%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.101e-02	1.0000	177.0	6.52%	3407.2	7.32%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-5.003e-02	1.0000	103.0	3.79%	2058.9	4.42%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.905e-02	1.0000	619.0	22.80%	11245.5	24.14%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-4.870e-02	1.0000	146.0	5.38%	2849.2	6.12%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.752e-02	1.0000	45.0	1.66%	973.2	2.09%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-4.729e-02	1.0000	415.0	15.29%	7665.3	16.46%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-4.728e-02	1.0000	85.0	3.13%	1729.5	3.71%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.706e-02	1.0000	204.0	7.51%	3904.2	8.38%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.589e-02	1.0000	9.0	0.33%	251.3	0.54%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-4.377e-02	1.0000	70.0	2.58%	1454.6	3.12%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-4.129e-02	1.0000	228.0	8.40%	4352.8	9.35%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.033e-02	1.0000	6.0	0.22%	187.2	0.40%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-3.700e-02	1.0000	4.0	0.15%	141.4	0.30%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.643e-02	1.0000	5.0	0.18%	166.3	0.36%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-3.553e-02	1.0000	28.0	1.03%	656.5	1.41%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-3.363e-02	1.0000	370.0	13.63%	6918.3	14.85%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-3.225e-02	1.0000	446.0	16.43%	8272.8	17.76%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-3.223e-02	1.0000	22.0	0.81%	539.2	1.16%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-3.209e-02	1.0000	20.0	0.74%	498.7	1.07%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-3.154e-02	1.0000	19.0	0.70%	478.4	1.03%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-3.088e-02	1.0000	213.0	7.85%	4115.5	8.84%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-3.064e-02	1.0000	256.0	9.43%	4892.4	10.50%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-3.029e-02	1.0000	56.0	2.06%	1213.4	2.61%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-3.024e-02	1.0000	52.0	1.92%	1136.4	2.44%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-2.988e-02	1.0000	479.0	17.64%	8867.8	19.04%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-2.975e-02	1.0000	481.0	17.72%	8903.5	19.12%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.957e-02	1.0000	44.0	1.62%	982.8	2.11%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.945e-02	1.0000	232.0	8.55%	4464.2	9.58%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-2.901e-02	1.0000	39.0	1.44%	885.8	1.90%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.875e-02	1.0000	49.0	1.80%	1081.4	2.32%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-2.850e-02	1.0000	415.0	15.29%	7742.0	16.62%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-2.789e-02	1.0000	376.0	13.85%	7051.2	15.14%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.789e-02	1.0000	124.0	4.57%	2498.9	5.37%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.746e-02	1.0000	59.0	2.17%	1277.1	2.74%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.646e-02	1.0000	75.0	2.76%	1585.9	3.40%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-2.639e-02	1.0000	61.0	2.25%	1318.3	2.83%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-2.557e-02	1.0000	4.0	0.15%	150.9	0.32%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.500e-02	1.0000	294.0	10.83%	5600.4	12.02%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-2.240e-02	1.0000	21.0	0.77%	534.6	1.15%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.154e-02	1.0000	70.0	2.58%	1504.8	3.23%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.033e-02	1.0000	16.0	0.59%	432.4	0.93%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.937e-02	1.0000	231.0	8.51%	4493.8	9.65%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.874e-02	1.0000	261.0	9.61%	5040.9	10.82%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.784e-02	1.0000	307.0	11.31%	5875.9	12.62%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.761e-02	1.0000	229.0	8.43%	4467.9	9.59%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.756e-02	1.0000	61.0	2.25%	1344.9	2.89%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-1.686e-02	1.0000	130.0	4.79%	2653.1	5.70%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.659e-02	1.0000	222.0	8.18%	4346.1	9.33%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.656e-02	1.0000	204.0	7.51%	4018.2	8.63%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.621e-02	1.0000	41.0	1.51%	956.9	2.05%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.603e-02	1.0000	111.0	4.09%	2302.5	4.94%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.603e-02	1.0000	111.0	4.09%	2302.5	4.94%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.588e-02	1.0000	80.0	2.95%	1716.6	3.69%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.575e-02	1.0000	87.0	3.20%	1850.6	3.97%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.560e-02	1.0000	148.0	5.45%	2994.2	6.43%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.493e-02	1.0000	12.0	0.44%	355.5	0.76%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.464e-02	1.0000	84.0	3.09%	1798.7	3.86%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-1.365e-02	1.0000	580.0	21.36%	10768.9	23.12%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.361e-02	1.0000	39.0	1.44%	925.9	1.99%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-1.352e-02	1.0000	95.0	3.50%	2013.7	4.32%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.313e-02	1.0000	80.0	2.95%	1729.4	3.71%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-1.294e-02	1.0000	149.0	5.49%	3029.7	6.50%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.278e-02	1.0000	198.0	7.29%	3934.0	8.45%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-1.254e-02	1.0000	22.0	0.81%	579.1	1.24%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.232e-02	1.0000	127.0	4.68%	2623.9	5.63%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.213e-02	1.0000	11.0	0.41%	339.5	0.73%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.135e-02	1.0000	288.0	10.61%	5585.6	11.99%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.081e-02	1.0000	5.0	0.18%	197.8	0.42%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-9.802e-03	1.0000	278.0	10.24%	5420.1	11.64%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-9.559e-03	1.0000	231.0	8.51%	4567.8	9.81%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-8.869e-03	1.0000	240.0	8.84%	4739.8	10.18%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-8.229e-03	1.0000	189.0	6.96%	3810.3	8.18%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-7.741e-03	1.0000	707.0	26.04%	13087.1	28.10%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-7.564e-03	1.0000	47.0	1.73%	1116.7	2.40%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.216e-03	1.0000	31.0	1.14%	798.9	1.72%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-6.200e-03	1.0000	32.0	1.18%	819.3	1.76%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-5.936e-03	1.0000	29.0	1.07%	758.1	1.63%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-5.865e-03	1.0000	75.0	2.76%	1684.7	3.62%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.065e-03	1.0000	11.0	0.41%	366.5	0.79%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-4.534e-03	1.0000	407.0	14.99%	7835.8	16.82%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-4.277e-03	1.0000	150.0	5.52%	3139.1	6.74%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-4.165e-03	1.0000	282.0	10.39%	5583.0	11.99%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.134e-03	1.0000	26.0	0.96%	709.7	1.52%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-4.127e-03	1.0000	261.0	9.61%	5199.0	11.16%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-3.624e-03	1.0000	181.0	6.67%	3733.3	8.02%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-3.412e-03	1.0000	184.0	6.78%	3794.5	8.15%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-3.244e-03	1.0000	67.0	2.47%	1561.1	3.35%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.009e-03	1.0000	22.0	0.81%	634.2	1.36%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-2.972e-03	1.0000	133.0	4.90%	2845.0	6.11%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.810e-03	1.0000	54.0	1.99%	1309.0	2.81%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-2.761e-03	1.0000	260.0	9.58%	5219.4	11.21%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-2.632e-03	1.0000	23.0	0.85%	661.3	1.42%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-2.353e-03	1.0000	29.0	1.07%	796.7	1.71%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-2.224e-03	1.0000	126.0	4.64%	2732.9	5.87%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.207e-03	1.0000	63.0	2.32%	1502.7	3.23%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.960e-03	1.0000	25.0	0.92%	716.9	1.54%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-1.692e-03	1.0000	213.0	7.85%	4393.2	9.43%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.686e-03	1.0000	126.0	4.64%	2751.4	5.91%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.501e-03	1.0000	3.0	0.11%	184.2	0.40%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.499e-03	1.0000	248.0	9.13%	5053.0	10.85%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.056e-03	1.0000	97.0	3.57%	2218.1	4.76%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.031e-03	1.0000	654.0	24.09%	12417.4	26.66%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-8.210e-04	1.0000	22.0	0.81%	681.0	1.46%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-6.520e-04	1.0000	81.0	2.98%	1928.5	4.14%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-5.160e-04	1.0000	158.0	5.82%	3446.0	7.40%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-4.410e-04	1.0000	110.0	4.05%	2525.5	5.42%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-3.980e-04	1.0000	180.0	6.63%	3883.1	8.34%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-3.960e-04	1.0000	142.0	5.23%	3155.5	6.77%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-3.860e-04	1.0000	106.0	3.90%	2454.8	5.27%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-2.350e-04	1.0000	265.0	9.76%	5524.0	11.86%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-2.260e-04	1.0000	84.0	3.09%	2044.3	4.39%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.210e-04	1.0000	142.0	5.23%	3192.4	6.85%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-2.180e-04	1.0000	108.0	3.98%	2526.7	5.42%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-1.390e-04	1.0000	110.0	4.05%	2591.8	5.56%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-4.300e-05	1.0000	23.0	0.85%	799.1	1.72%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-3.500e-05	1.0000	90.0	3.31%	2259.6	4.85%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.800e-05	1.0000	19.0	0.70%	727.5	1.56%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.700e-05	1.0000	202.0	7.44%	4515.3	9.69%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.400e-05	1.0000	98.0	3.61%	2467.8	5.30%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-8.000e-06	1.0000	275.0	10.13%	5960.1	12.80%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-2.000e-06	1.0000	73.0	2.69%	2034.6	4.37%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.000e-06	1.0000	34.0	1.25%	1179.5	2.53%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e0	-0.000e+00	1.0000	82.0	3.02%	2696.8	5.79%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	20.1	0.04%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	9.4	0.02%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	44.1	0.09%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	4.3	0.01%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	0.000e+00	1.0000	0.0	0.00%	27.3	0.06%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.6	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	12.3	0.03%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	0.000e+00	1.0000	0.0	0.00%	27.4	0.06%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	18.7	0.04%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	0.000e+00	1.0000	0.0	0.00%	35.7	0.08%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	5.8	0.01%