Information for 9-CGTGTTCG (Motif 23)

G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
Reverse Opposite:
G A T C T C A G C G T A G T C A A G T C C G T A A G T C C T A G
p-value:1e-9
log p-value:-2.081e+01
Information Content per bp:1.787
Number of Target Sequences with motif195.0
Percentage of Target Sequences with motif7.18%
Number of Background Sequences with motif2128.3
Percentage of Background Sequences with motif4.57%
Average Position of motif in Targets104.8 +/- 52.2bp
Average Position of motif in Background101.7 +/- 63.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

lin-14/MA0261.1/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CGTGTTCG
-GTGTTC-
 G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
A C G T T C A G G A C T A C T G A C G T A C G T A G T C A C G T

MA0261.1_lin-14/Jaspar

Match Rank:2
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CGTGTTCG
-GTGTTC-
 G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
A C G T T C A G G A C T A C T G A C G T A C G T A G T C A C G T

Tp_0225(RRM)/Thalassiosira_pseudonana-RNCMPT00225-PBM/HughesRNA

Match Rank:3
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-CGTGTTCG
GCGTGTT--
 A C G T G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
C T A G A G T C A C T G A G C T A T C G A C G T C G A T A C G T A C G T

Lm_0223(RRM)/Leishmania_major-RNCMPT00223-PBM/HughesRNA

Match Rank:4
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CGTGTTCG
CGTGTAA-
 G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
A G T C A C T G A C G T A C T G C G A T C G T A G T C A A C G T

HNRNPL(RRM)/Homo_sapiens-RNCMPT00091-PBM/HughesRNA

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CGTGTTCG
NTTGTGT---
 A C G T A C G T G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
A G C T A G C T A G C T A C T G A C G T A C T G A C G T A C G T A C G T A C G T

ZNF638(RRM)/Homo_sapiens-RNCMPT00164-PBM/HughesRNA

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CGTGTTCG-
--TGTTCGT
 G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G A C G T
A C G T A C G T A G C T A C T G A C G T A C G T A T G C A C T G A C G T

HAC1/MA0310.1/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CGTGTTCG
CACGTGTC--
 A C G T A C G T G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
A G T C C G T A A G T C A C T G A C G T A C T G A C G T G A T C A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:8
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CGTGTTCG
AACACGTGTT--
 A C G T A C G T A C G T A C G T G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T

CMTA3/MA0970.1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CGTGTTCG
CCGCGTTAC
 A C G T G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
T G A C G T A C C T A G G A T C C T A G G A C T G A C T T C G A A G T C

ara/MA0210.1/Jaspar

Match Rank:10
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CGTGTTCG
--TGTTA-
 G A T C C T A G C G A T A C T G A C G T G C A T A G T C C T A G
A C G T A C G T A C G T A C T G A C G T C G A T G C T A A C G T