Information for 9-TTTGTTAATTAA (Motif 12)

A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A
Reverse Opposite:
G C A T A G C T T C G A C G T A A C G T C G A T C G T A C G T A A T G C C G T A T G C A T G C A
p-value:1e-11
log p-value:-2.589e+01
Information Content per bp:1.691
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif768.9
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets101.6 +/- 60.3bp
Average Position of motif in Background95.5 +/- 59.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0091.1_Lhx1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA----
NNTTATTAATTAATNCN
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G

PH0069.1_Hoxc4/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA----
NNTNNTTAATTAATNCG
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
C A G T C G T A A C G T C G A T T C A G G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A G A C T C A G T A G T C A C T G

PH0051.1_Hoxa4/Jaspar

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TTTGTTAATTAA----
GATTATTAATTAACTTG
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
C T A G C T G A G A C T G A C T T C G A G C A T G A C T G T C A C G T A G A C T A C G T C T G A C G T A A G T C C A G T A G C T A C T G

br-Z1/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA
ACTTGTCAATTA-
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A
C G A T A G C T A C G T A C G T A C T G A C G T A G C T C G A T C G A T A C G T A C G T C G T A A C G T

PH0153.1_Prop1/Jaspar

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA----
GNNTNTTAATTAATNCN
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
C T A G G A C T G C A T G C A T G T A C G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A G C T A C G T A G T C A C T G

PH0059.1_Hoxb4/Jaspar

Match Rank:6
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA----
GNTNATTAATTAACNNG
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
C T A G C A T G A C G T C G T A T C G A G A C T G A C T G T C A C G T A C G A T A C G T C T G A C T G A A G T C C A T G A G T C A T C G

PH0100.1_Lmx1a/Jaspar

Match Rank:7
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA----
NNTTTTTAATTAATTCG
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
C T A G C T A G C G A T C G A T G C A T G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G A T C G A T A T G C A T C G

PH0101.1_Lmx1b/Jaspar

Match Rank:8
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TTTGTTAATTAA----
AGTTTTTAATTAATTTG
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PH0176.1_Vsx1/Jaspar

Match Rank:9
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA----
ANTNATTAATTAACTNG
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
T C G A C G T A A C G T G A C T C T G A G A C T G A C T G T C A C G T A G A C T A C G T C T G A C T G A G A T C C A G T A T G C C A T G

PH0093.1_Lhx3/Jaspar

Match Rank:10
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTAATTAA----
NNTATTTAATTAATTNN
 A C G T A C G T A C G T G C A T T A C G G C A T G C A T G C T A T G C A G C A T A G C T T C G A C G T A A C G T A C G T A C G T A C G T
T G C A C A G T C A G T G C T A G C A T G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A A G C T C A G T G C A T A T G C