Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 11923)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 36520)	% of Background Sequences with Motif
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-35	-8.270e+01	0.0000	1240.0	10.40%	2640.4	7.23%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-32	-7.563e+01	0.0000	1744.0	14.62%	4026.7	11.02%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-18	-4.224e+01	0.0000	804.0	6.74%	1788.3	4.90%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-16	-3.814e+01	0.0000	4298.0	36.04%	11838.7	32.41%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-16	-3.684e+01	0.0000	4761.0	39.92%	13249.0	36.27%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-13	-3.082e+01	0.0000	477.0	4.00%	1022.4	2.80%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-12	-2.958e+01	0.0000	5487.0	46.00%	15591.1	42.68%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-12	-2.771e+01	0.0000	3309.0	27.74%	9101.1	24.92%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-11	-2.558e+01	0.0000	1831.0	15.35%	4826.6	13.21%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-9	-2.140e+01	0.0000	2057.0	17.25%	5552.8	15.20%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-9	-2.099e+01	0.0000	1959.0	16.42%	5275.2	14.44%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-9	-2.076e+01	0.0000	859.0	7.20%	2142.9	5.87%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-8	-1.941e+01	0.0000	1610.0	13.50%	4294.7	11.76%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-7	-1.793e+01	0.0000	3272.0	27.43%	9209.2	25.21%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-7	-1.733e+01	0.0000	1408.0	11.81%	3749.2	10.26%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-7	-1.729e+01	0.0000	2331.0	19.54%	6438.2	17.63%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-7	-1.670e+01	0.0000	1259.0	10.56%	3332.8	9.12%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-7	-1.627e+01	0.0000	2019.0	16.93%	5545.7	15.18%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.542e+01	0.0000	2588.0	21.70%	7241.2	19.82%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-5	-1.304e+01	0.0001	1302.0	10.92%	3524.9	9.65%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-5	-1.283e+01	0.0001	2565.0	21.51%	7241.0	19.82%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-5	-1.224e+01	0.0002	3287.0	27.56%	9413.1	25.77%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-5	-1.205e+01	0.0003	3867.0	32.42%	11162.5	30.56%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-5	-1.185e+01	0.0003	4343.0	36.41%	12606.4	34.51%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-5	-1.185e+01	0.0003	1990.0	16.68%	5565.8	15.24%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-4	-1.116e+01	0.0006	1289.0	10.81%	3527.0	9.66%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-4	-1.105e+01	0.0006	275.0	2.31%	649.0	1.78%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-4	-1.042e+01	0.0011	1513.0	12.69%	4198.4	11.49%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-4	-1.031e+01	0.0012	3496.0	29.31%	10105.7	27.67%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-4	-1.029e+01	0.0012	2697.0	22.61%	7710.1	21.11%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-4	-1.028e+01	0.0012	1363.0	11.43%	3762.0	10.30%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-4	-1.023e+01	0.0012	2013.0	16.88%	5677.0	15.54%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-4	-9.684e+00	0.0019	2041.0	17.11%	5776.0	15.81%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-4	-9.640e+00	0.0019	2854.0	23.93%	8201.8	22.45%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-4	-9.614e+00	0.0019	802.0	6.72%	2148.8	5.88%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-4	-9.569e+00	0.0020	1411.0	11.83%	3920.1	10.73%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-4	-9.416e+00	0.0022	1227.0	10.29%	3385.3	9.27%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-4	-9.277e+00	0.0025	3979.0	33.36%	11600.9	31.76%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-3	-9.031e+00	0.0031	132.0	1.11%	288.5	0.79%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-3	-8.868e+00	0.0035	2846.0	23.86%	8204.6	22.46%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-3	-8.773e+00	0.0038	2070.0	17.36%	5890.9	16.13%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-3	-8.593e+00	0.0044	533.0	4.47%	1397.6	3.83%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-3	-8.476e+00	0.0049	2050.0	17.19%	5840.6	15.99%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-3	-8.430e+00	0.0050	2753.0	23.08%	7941.2	21.74%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-3	-8.246e+00	0.0059	1227.0	10.29%	3414.0	9.35%
SeqBias: CA-repeat	CACACACACA	1e-3	-8.109e+00	0.0066	5261.0	44.11%	15542.7	42.55%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-3	-7.999e+00	0.0072	806.0	6.76%	2192.2	6.00%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-3	-7.991e+00	0.0072	1105.0	9.26%	3064.0	8.39%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-3	-7.942e+00	0.0073	1664.0	13.95%	4711.7	12.90%
SeqBias: C/A-bias	MMMMMMMMMM	1e-3	-7.897e+00	0.0075	11901.0	99.78%	36379.1	99.60%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-3	-7.826e+00	0.0079	823.0	6.90%	2245.8	6.15%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-3	-7.683e+00	0.0089	3286.0	27.55%	9572.2	26.21%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-3	-7.683e+00	0.0089	1131.0	9.48%	3147.5	8.62%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-3	-7.665e+00	0.0089	788.0	6.61%	2147.4	5.88%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-7.341e+00	0.0119	2179.0	18.27%	6263.2	17.15%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-3	-7.264e+00	0.0126	1670.0	14.00%	4750.1	13.00%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-3	-7.241e+00	0.0126	1208.0	10.13%	3385.4	9.27%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-3	-6.993e+00	0.0159	1697.0	14.23%	4839.5	13.25%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e-2	-6.902e+00	0.0172	1318.0	11.05%	3719.7	10.18%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-2	-6.836e+00	0.0180	1459.0	12.23%	4138.3	11.33%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-2	-6.783e+00	0.0187	1777.0	14.90%	5084.8	13.92%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-2	-6.759e+00	0.0188	2592.0	21.73%	7522.5	20.59%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-2	-6.739e+00	0.0189	1846.0	15.48%	5291.3	14.49%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-2	-6.664e+00	0.0201	4233.0	35.49%	12482.8	34.17%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-2	-6.645e+00	0.0201	970.0	8.13%	2702.6	7.40%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-2	-6.538e+00	0.0221	2313.0	19.39%	6694.4	18.33%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-2	-6.488e+00	0.0228	834.0	6.99%	2308.6	6.32%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-2	-6.436e+00	0.0237	1783.0	14.95%	5114.4	14.00%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-2	-6.375e+00	0.0248	2638.0	22.12%	7676.1	21.02%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-2	-6.375e+00	0.0248	2067.0	17.33%	5964.5	16.33%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-6.342e+00	0.0250	1550.0	13.00%	4424.9	12.11%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-2	-6.266e+00	0.0266	2089.0	17.51%	6034.0	16.52%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-2	-6.259e+00	0.0266	11881.0	99.61%	36314.1	99.42%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-2	-6.258e+00	0.0266	2768.0	23.21%	8073.0	22.10%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-2	-6.163e+00	0.0283	1054.0	8.84%	2962.6	8.11%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-6.107e+00	0.0295	716.0	6.00%	1973.1	5.40%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-6.050e+00	0.0308	892.0	7.48%	2490.0	6.82%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-2	-6.036e+00	0.0308	615.0	5.16%	1681.3	4.60%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-2	-5.947e+00	0.0333	2228.0	18.68%	6463.1	17.69%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-2	-5.876e+00	0.0353	968.0	8.12%	2717.1	7.44%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-2	-5.861e+00	0.0354	1619.0	13.57%	4646.9	12.72%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-2	-5.837e+00	0.0358	2464.0	20.66%	7176.4	19.65%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.828e+00	0.0358	2357.0	19.76%	6855.4	18.77%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-2	-5.822e+00	0.0358	127.0	1.06%	301.8	0.83%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-2	-5.771e+00	0.0369	2486.0	20.84%	7245.0	19.83%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-2	-5.756e+00	0.0370	907.0	7.60%	2541.4	6.96%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e-2	-5.737e+00	0.0373	400.0	3.35%	1067.0	2.92%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-2	-5.733e+00	0.0373	3215.0	26.96%	9444.4	25.86%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-2	-5.600e+00	0.0418	2648.0	22.20%	7740.4	21.19%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-2	-5.518e+00	0.0448	2258.0	18.93%	6571.7	17.99%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-2	-5.516e+00	0.0448	2203.0	18.47%	6406.1	17.54%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e-2	-5.514e+00	0.0448	792.0	6.64%	2210.6	6.05%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-2	-5.406e+00	0.0485	23.0	0.19%	38.3	0.10%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-5.395e+00	0.0486	1198.0	10.04%	3411.3	9.34%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-2	-5.365e+00	0.0495	440.0	3.69%	1189.1	3.26%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-2	-5.355e+00	0.0495	3052.0	25.59%	8970.8	24.56%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.346e+00	0.0495	1893.0	15.87%	5484.3	15.01%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-2	-5.334e+00	0.0495	1989.0	16.68%	5772.5	15.80%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-2	-5.321e+00	0.0497	913.0	7.65%	2571.6	7.04%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-2	-5.242e+00	0.0532	3285.0	27.54%	9681.0	26.50%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-2	-5.197e+00	0.0551	1915.0	16.06%	5556.7	15.21%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.191e+00	0.0551	163.0	1.37%	406.1	1.11%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-2	-5.175e+00	0.0552	63.0	0.53%	137.9	0.38%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-2	-5.155e+00	0.0558	2508.0	21.03%	7339.9	20.09%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-2	-5.134e+00	0.0564	234.0	1.96%	605.4	1.66%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-5.108e+00	0.0574	5566.0	46.67%	16626.0	45.52%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-2	-5.086e+00	0.0582	3119.0	26.15%	9187.0	25.15%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-5.064e+00	0.0589	662.0	5.55%	1841.8	5.04%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-2	-5.042e+00	0.0596	1380.0	11.57%	3964.9	10.85%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-2	-5.040e+00	0.0596	1483.0	12.43%	4271.2	11.69%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.007e+00	0.0606	1169.0	9.80%	3338.5	9.14%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-2	-4.888e+00	0.0677	2726.0	22.86%	8009.7	21.93%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-2	-4.882e+00	0.0677	567.0	4.75%	1568.0	4.29%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-2	-4.876e+00	0.0677	460.0	3.86%	1257.4	3.44%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-2	-4.835e+00	0.0695	1417.0	11.88%	4082.8	11.18%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-4.807e+00	0.0709	1019.0	8.54%	2900.5	7.94%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-2	-4.798e+00	0.0709	201.0	1.69%	517.5	1.42%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-2	-4.786e+00	0.0711	1629.0	13.66%	4717.6	12.92%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-2	-4.683e+00	0.0782	1551.0	13.00%	4488.1	12.29%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-2	-4.676e+00	0.0782	2503.0	20.99%	7347.1	20.11%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-2	-4.666e+00	0.0783	700.0	5.87%	1963.7	5.38%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-2	-4.658e+00	0.0783	479.0	4.02%	1317.2	3.61%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-2	-4.655e+00	0.0783	332.0	2.78%	892.1	2.44%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-2	-4.631e+00	0.0791	1351.0	11.33%	3893.7	10.66%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-4.588e+00	0.0819	737.0	6.18%	2074.1	5.68%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-4.562e+00	0.0834	1023.0	8.58%	2920.6	8.00%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-4.549e+00	0.0837	357.0	2.99%	967.0	2.65%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-1	-4.544e+00	0.0837	91.0	0.76%	216.6	0.59%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-4.403e+00	0.0955	242.0	2.03%	639.7	1.75%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-4.396e+00	0.0955	1716.0	14.39%	4994.2	13.67%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-1	-4.382e+00	0.0960	2222.0	18.63%	6515.8	17.84%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-4.370e+00	0.0964	1361.0	11.41%	3933.9	10.77%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-1	-4.367e+00	0.0964	851.0	7.14%	2417.3	6.62%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-4.362e+00	0.0964	43.0	0.36%	92.0	0.25%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-1	-4.352e+00	0.0964	1867.0	15.65%	5449.9	14.92%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-4.341e+00	0.0964	39.0	0.33%	81.5	0.22%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-1	-4.337e+00	0.0964	4907.0	41.14%	14661.7	40.14%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-4.329e+00	0.0964	5353.0	44.88%	16023.4	43.87%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-4.324e+00	0.0964	58.0	0.49%	130.3	0.36%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-1	-4.313e+00	0.0964	978.0	8.20%	2795.2	7.65%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-4.302e+00	0.0966	1526.0	12.79%	4429.0	12.13%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.291e+00	0.0970	1599.0	13.41%	4648.3	12.73%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-1	-4.286e+00	0.0970	2567.0	21.52%	7561.0	20.70%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-4.284e+00	0.0970	645.0	5.41%	1812.0	4.96%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-1	-4.269e+00	0.0971	652.0	5.47%	1833.7	5.02%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-1	-4.264e+00	0.0971	1249.0	10.47%	3603.8	9.87%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-4.250e+00	0.0976	1433.0	12.01%	4153.8	11.37%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-1	-4.240e+00	0.0979	585.0	4.90%	1637.1	4.48%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-4.219e+00	0.0993	734.0	6.15%	2076.8	5.69%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e-1	-4.204e+00	0.1001	1161.0	9.73%	3343.5	9.15%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-4.171e+00	0.1028	3424.0	28.71%	10160.2	27.82%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-4.148e+00	0.1045	1463.0	12.27%	4247.2	11.63%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-1	-4.121e+00	0.1068	605.0	5.07%	1699.4	4.65%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-1	-4.108e+00	0.1074	982.0	8.23%	2814.3	7.70%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-4.106e+00	0.1074	330.0	2.77%	897.2	2.46%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-4.099e+00	0.1074	898.0	7.53%	2565.3	7.02%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-4.091e+00	0.1074	52.0	0.44%	116.1	0.32%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-1	-4.086e+00	0.1074	557.0	4.67%	1559.6	4.27%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-1	-3.979e+00	0.1184	721.0	6.05%	2046.0	5.60%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-1	-3.938e+00	0.1225	1476.0	12.38%	4295.9	11.76%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.892e+00	0.1275	113.0	0.95%	283.2	0.78%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-1	-3.848e+00	0.1324	5333.0	44.71%	15994.6	43.79%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-3.843e+00	0.1324	551.0	4.62%	1548.6	4.24%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-3.798e+00	0.1375	223.0	1.87%	595.3	1.63%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.794e+00	0.1375	1995.0	16.73%	5861.3	16.05%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-1	-3.786e+00	0.1375	2120.0	17.77%	6238.1	17.08%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-1	-3.747e+00	0.1421	1154.0	9.68%	3340.1	9.14%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-3.670e+00	0.1526	365.0	3.06%	1008.7	2.76%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-1	-3.640e+00	0.1563	186.0	1.56%	492.1	1.35%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e-1	-3.638e+00	0.1563	362.0	3.04%	1000.3	2.74%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-1	-3.628e+00	0.1564	1491.0	12.50%	4354.0	11.92%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-1	-3.622e+00	0.1564	1998.0	16.75%	5880.0	16.10%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e-1	-3.605e+00	0.1581	670.0	5.62%	1906.7	5.22%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-1	-3.577e+00	0.1617	1264.0	10.60%	3676.5	10.07%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.571e+00	0.1617	528.0	4.43%	1488.4	4.07%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.563e+00	0.1621	1049.0	8.80%	3035.0	8.31%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-3.558e+00	0.1621	517.0	4.33%	1456.4	3.99%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-3.543e+00	0.1635	1037.0	8.69%	2999.7	8.21%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.510e+00	0.1680	1250.0	10.48%	3637.2	9.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.491e+00	0.1694	103.0	0.86%	260.3	0.71%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.491e+00	0.1694	103.0	0.86%	260.3	0.71%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.490e+00	0.1694	7.0	0.06%	9.5	0.03%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e-1	-3.421e+00	0.1797	133.0	1.12%	345.4	0.95%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e-1	-3.390e+00	0.1844	553.0	4.64%	1567.1	4.29%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-3.370e+00	0.1871	1130.0	9.47%	3284.2	8.99%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-3.355e+00	0.1888	1650.0	13.83%	4845.1	13.26%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-3.349e+00	0.1890	1382.0	11.59%	4040.4	11.06%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e-1	-3.341e+00	0.1894	30.0	0.25%	64.0	0.18%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-1	-3.321e+00	0.1922	2038.0	17.09%	6016.8	16.47%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-3.317e+00	0.1922	11385.0	95.46%	34736.1	95.10%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-1	-3.312e+00	0.1922	1882.0	15.78%	5546.1	15.18%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.310e+00	0.1922	222.0	1.86%	601.6	1.65%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-1	-3.306e+00	0.1922	1101.0	9.23%	3200.1	8.76%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.296e+00	0.1922	704.0	5.90%	2017.8	5.52%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-3.255e+00	0.1990	943.0	7.91%	2730.8	7.48%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.206e+00	0.2081	568.0	4.76%	1617.5	4.43%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-3.205e+00	0.2081	593.0	4.97%	1691.8	4.63%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-1	-3.180e+00	0.2113	743.0	6.23%	2137.4	5.85%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-1	-3.152e+00	0.2162	2003.0	16.79%	5920.1	16.21%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-1	-3.151e+00	0.2162	962.0	8.07%	2791.7	7.64%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.120e+00	0.2209	1119.0	9.38%	3262.0	8.93%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-1	-3.110e+00	0.2222	1459.0	12.23%	4283.8	11.73%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.107e+00	0.2222	179.0	1.50%	482.0	1.32%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-1	-3.096e+00	0.2231	1756.0	14.72%	5178.7	14.18%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-1	-3.093e+00	0.2231	1200.0	10.06%	3507.0	9.60%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-3.087e+00	0.2231	159.0	1.33%	424.8	1.16%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-3.081e+00	0.2232	84.0	0.70%	212.7	0.58%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-1	-3.052e+00	0.2285	1138.0	9.54%	3323.0	9.10%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-1	-3.019e+00	0.2350	2389.0	20.03%	7095.5	19.43%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-1	-3.014e+00	0.2351	1571.0	13.17%	4625.5	12.66%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-1	-3.003e+00	0.2367	723.0	6.06%	2084.6	5.71%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-1	-2.981e+00	0.2407	2373.0	19.90%	7049.4	19.30%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-1	-2.962e+00	0.2443	801.0	6.72%	2318.9	6.35%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-2.929e+00	0.2513	540.0	4.53%	1543.1	4.22%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e-1	-2.924e+00	0.2514	1103.0	9.25%	3223.6	8.83%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-2.906e+00	0.2547	894.0	7.50%	2598.8	7.11%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-2.896e+00	0.2562	2591.0	21.72%	7715.6	21.12%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-2.879e+00	0.2594	48.0	0.40%	115.7	0.32%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-1	-2.873e+00	0.2597	209.0	1.75%	572.5	1.57%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.869e+00	0.2597	103.0	0.86%	268.9	0.74%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-1	-2.865e+00	0.2597	996.0	8.35%	2905.6	7.95%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.835e+00	0.2660	894.0	7.50%	2602.0	7.12%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-2.835e+00	0.2660	364.0	3.05%	1026.2	2.81%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-1	-2.818e+00	0.2682	1139.0	9.55%	3336.2	9.13%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.816e+00	0.2682	141.0	1.18%	377.7	1.03%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-1	-2.810e+00	0.2682	54.0	0.45%	132.6	0.36%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-2.769e+00	0.2780	667.0	5.59%	1926.1	5.27%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-2.756e+00	0.2802	972.0	8.15%	2838.7	7.77%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.750e+00	0.2808	2229.0	18.69%	6628.5	18.15%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-1	-2.727e+00	0.2861	1244.0	10.43%	3656.0	10.01%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.710e+00	0.2899	1932.0	16.20%	5732.6	15.69%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-1	-2.687e+00	0.2952	734.0	6.15%	2129.6	5.83%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.686e+00	0.2952	387.0	3.24%	1098.1	3.01%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.668e+00	0.2983	74.0	0.62%	189.2	0.52%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-1	-2.642e+00	0.3050	813.0	6.82%	2367.8	6.48%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-2.635e+00	0.3058	2135.0	17.90%	6351.2	17.39%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e-1	-2.605e+00	0.3138	980.0	8.22%	2869.7	7.86%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-1	-2.593e+00	0.3163	1410.0	11.82%	4163.8	11.40%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-1	-2.591e+00	0.3163	176.0	1.48%	482.7	1.32%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-2.570e+00	0.3207	1317.0	11.04%	3884.2	10.63%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-2.546e+00	0.3271	1656.0	13.88%	4908.5	13.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.540e+00	0.3278	28.0	0.23%	64.2	0.18%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-1	-2.528e+00	0.3305	2596.0	21.77%	7756.0	21.23%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-1	-2.511e+00	0.3347	1435.0	12.03%	4243.1	11.62%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e-1	-2.498e+00	0.3376	910.0	7.63%	2664.9	7.30%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e-1	-2.489e+00	0.3393	438.0	3.67%	1255.2	3.44%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-2.477e+00	0.3421	1776.0	14.89%	5275.5	14.44%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-2.469e+00	0.3434	1573.0	13.19%	4662.8	12.77%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.460e+00	0.3453	604.0	5.06%	1750.3	4.79%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-2.444e+00	0.3494	11019.0	92.39%	33621.8	92.05%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-1	-2.438e+00	0.3499	974.0	8.17%	2859.3	7.83%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.415e+00	0.3567	936.0	7.85%	2746.8	7.52%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-2.415e+00	0.3567	7303.0	61.23%	22144.3	60.62%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.380e+00	0.3665	549.0	4.60%	1589.9	4.35%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-2.372e+00	0.3679	914.0	7.66%	2682.3	7.34%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-1	-2.371e+00	0.3679	5464.0	45.81%	16512.9	45.21%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-1	-2.322e+00	0.3840	563.0	4.72%	1633.7	4.47%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.300e+00	0.3909	248.0	2.08%	699.3	1.91%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-2.286e+00	0.3949	31.0	0.26%	74.7	0.20%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-2.285e+00	0.3949	835.0	7.00%	2449.9	6.71%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.276e+00	0.3959	210.0	1.76%	588.9	1.61%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-2.261e+00	0.4003	187.0	1.57%	521.8	1.43%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.253e+00	0.4020	930.0	7.80%	2736.1	7.49%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.244e+00	0.4041	49.0	0.41%	124.6	0.34%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-2.243e+00	0.4041	833.0	6.98%	2445.2	6.69%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-2.240e+00	0.4041	510.0	4.28%	1478.5	4.05%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.224e+00	0.4076	118.0	0.99%	321.9	0.88%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-2.220e+00	0.4078	2339.0	19.61%	6999.6	19.16%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-2.216e+00	0.4078	451.0	3.78%	1303.9	3.57%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-2.208e+00	0.4096	890.0	7.46%	2618.3	7.17%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.199e+00	0.4118	113.0	0.95%	307.8	0.84%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-2.198e+00	0.4118	1247.0	10.46%	3694.0	10.11%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-2.161e+00	0.4247	140.0	1.17%	386.8	1.06%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.155e+00	0.4254	667.0	5.59%	1951.3	5.34%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.153e+00	0.4254	467.0	3.92%	1353.0	3.70%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-2.132e+00	0.4321	1437.0	12.05%	4272.3	11.70%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.132e+00	0.4321	998.0	8.37%	2947.3	8.07%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-2.131e+00	0.4321	367.0	3.08%	1057.0	2.89%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-2.115e+00	0.4352	609.0	5.11%	1779.7	4.87%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.113e+00	0.4352	37.0	0.31%	92.9	0.25%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.112e+00	0.4352	14.0	0.12%	30.8	0.08%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-2.111e+00	0.4352	2013.0	16.88%	6018.5	16.48%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-2.108e+00	0.4352	879.0	7.37%	2590.0	7.09%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.105e+00	0.4352	362.0	3.04%	1042.2	2.85%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-2.102e+00	0.4352	1439.0	12.07%	4280.4	11.72%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-2.093e+00	0.4352	4328.0	36.29%	13067.4	35.77%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.085e+00	0.4357	5.0	0.04%	8.0	0.02%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.072e+00	0.4400	106.0	0.89%	289.3	0.79%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-2.068e+00	0.4403	335.0	2.81%	963.1	2.64%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-2.065e+00	0.4403	117.0	0.98%	322.0	0.88%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.060e+00	0.4408	311.0	2.61%	892.4	2.44%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.056e+00	0.4408	525.0	4.40%	1530.6	4.19%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.055e+00	0.4408	533.0	4.47%	1554.4	4.26%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.043e+00	0.4434	1072.0	8.99%	3176.0	8.69%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.020e+00	0.4525	3348.0	28.07%	10086.0	27.61%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-2.014e+00	0.4534	3401.0	28.52%	10247.3	28.05%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.996e+00	0.4602	966.0	8.10%	2858.3	7.83%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.955e+00	0.4778	1253.0	10.51%	3728.0	10.21%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.955e+00	0.4778	288.0	2.41%	827.8	2.27%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.944e+00	0.4800	1877.0	15.74%	5618.3	15.38%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.939e+00	0.4806	1013.0	8.49%	3003.3	8.22%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.936e+00	0.4806	351.0	2.94%	1015.7	2.78%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.935e+00	0.4806	411.0	3.45%	1194.9	3.27%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.934e+00	0.4806	997.0	8.36%	2955.1	8.09%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.921e+00	0.4829	1736.0	14.56%	5192.4	14.22%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.897e+00	0.4933	1771.0	14.85%	5300.2	14.51%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.887e+00	0.4965	826.0	6.93%	2442.0	6.69%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.867e+00	0.5050	1000.0	8.38%	2968.8	8.13%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.857e+00	0.5085	67.0	0.56%	180.3	0.49%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.854e+00	0.5085	1675.0	14.04%	5012.0	13.72%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.847e+00	0.5103	605.0	5.07%	1779.4	4.87%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.840e+00	0.5119	69.0	0.58%	186.4	0.51%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.839e+00	0.5119	54.0	0.45%	143.8	0.39%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.831e+00	0.5135	333.0	2.79%	965.8	2.64%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.824e+00	0.5153	1022.0	8.57%	3037.7	8.32%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.822e+00	0.5153	708.0	5.94%	2090.0	5.72%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.820e+00	0.5153	698.0	5.85%	2060.0	5.64%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.818e+00	0.5153	1052.0	8.82%	3128.8	8.57%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.809e+00	0.5165	391.0	3.28%	1139.8	3.12%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.802e+00	0.5184	1216.0	10.20%	3625.9	9.93%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.801e+00	0.5184	955.0	8.01%	2836.0	7.76%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.784e+00	0.5250	1280.0	10.73%	3820.8	10.46%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.769e+00	0.5311	641.0	5.37%	1891.9	5.18%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.769e+00	0.5311	2707.0	22.70%	8157.0	22.33%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-1.753e+00	0.5364	526.0	4.41%	1546.3	4.23%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.746e+00	0.5387	95.0	0.80%	263.9	0.72%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.734e+00	0.5432	1300.0	10.90%	3884.0	10.63%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.732e+00	0.5432	394.0	3.30%	1151.5	3.15%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.729e+00	0.5432	509.0	4.27%	1496.9	4.10%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.729e+00	0.5432	413.0	3.46%	1209.0	3.31%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.727e+00	0.5432	450.0	3.77%	1319.2	3.61%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-1.727e+00	0.5432	934.0	7.83%	2777.8	7.60%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.711e+00	0.5461	888.0	7.45%	2639.8	7.23%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.709e+00	0.5461	1241.0	10.40%	3707.2	10.15%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.704e+00	0.5464	1263.0	10.59%	3774.2	10.33%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.704e+00	0.5464	431.0	3.61%	1263.8	3.46%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.673e+00	0.5603	1911.0	16.02%	5743.7	15.72%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.668e+00	0.5612	2972.0	24.92%	8973.9	24.57%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.652e+00	0.5689	285.0	2.39%	828.1	2.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.647e+00	0.5697	629.0	5.27%	1861.5	5.10%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-1.640e+00	0.5721	499.0	4.18%	1470.5	4.03%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.635e+00	0.5736	1359.0	11.39%	4070.6	11.14%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.633e+00	0.5736	369.0	3.09%	1080.7	2.96%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.633e+00	0.5736	420.0	3.52%	1233.9	3.38%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.620e+00	0.5773	504.0	4.23%	1486.3	4.07%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.619e+00	0.5773	297.0	2.49%	865.0	2.37%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.615e+00	0.5773	120.0	1.01%	339.9	0.93%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.613e+00	0.5773	704.0	5.90%	2089.9	5.72%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.610e+00	0.5773	428.0	3.59%	1258.1	3.44%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.605e+00	0.5776	732.0	6.14%	2174.3	5.95%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.604e+00	0.5776	781.0	6.55%	2322.0	6.36%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-1.588e+00	0.5841	1314.0	11.02%	3937.7	10.78%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.582e+00	0.5856	115.0	0.96%	325.2	0.89%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.580e+00	0.5856	597.0	5.01%	1768.0	4.84%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.580e+00	0.5856	713.0	5.98%	2118.2	5.80%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.575e+00	0.5856	167.0	1.40%	479.8	1.31%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.559e+00	0.5925	341.0	2.86%	999.7	2.74%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.551e+00	0.5956	681.0	5.71%	2023.3	5.54%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.550e+00	0.5956	78.0	0.65%	217.6	0.60%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.537e+00	0.6010	392.0	3.29%	1153.0	3.16%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.526e+00	0.6055	49.0	0.41%	133.2	0.36%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.516e+00	0.6100	683.0	5.73%	2031.8	5.56%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.511e+00	0.6114	949.0	7.96%	2836.7	7.77%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.497e+00	0.6185	78.0	0.65%	218.4	0.60%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.496e+00	0.6185	1731.0	14.51%	5211.1	14.27%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.486e+00	0.6216	2131.0	17.87%	6429.3	17.60%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.483e+00	0.6223	37.0	0.31%	99.2	0.27%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-1.475e+00	0.6252	2519.0	21.12%	7612.6	20.84%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.472e+00	0.6258	412.0	3.45%	1216.6	3.33%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.455e+00	0.6345	1141.0	9.57%	3423.0	9.37%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.455e+00	0.6345	92.0	0.77%	260.1	0.71%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.452e+00	0.6345	1734.0	14.54%	5224.5	14.30%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.451e+00	0.6345	1354.0	11.35%	4069.1	11.14%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.450e+00	0.6345	1298.0	10.88%	3899.1	10.67%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.449e+00	0.6345	1214.0	10.18%	3644.7	9.98%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.446e+00	0.6345	11.0	0.09%	26.3	0.07%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.427e+00	0.6407	958.0	8.03%	2869.0	7.85%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-1.424e+00	0.6407	3382.0	28.36%	10250.8	28.06%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.415e+00	0.6448	89.0	0.75%	252.6	0.69%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.414e+00	0.6448	352.0	2.95%	1038.0	2.84%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.414e+00	0.6448	600.0	5.03%	1786.2	4.89%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.413e+00	0.6448	437.0	3.66%	1294.5	3.54%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.413e+00	0.6448	90.0	0.75%	255.6	0.70%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.407e+00	0.6448	2393.0	20.06%	7235.1	19.81%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.406e+00	0.6448	93.0	0.78%	264.6	0.72%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.405e+00	0.6448	741.0	6.21%	2213.2	6.06%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.404e+00	0.6448	159.0	1.33%	460.8	1.26%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.401e+00	0.6448	1834.0	15.38%	5533.6	15.15%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.393e+00	0.6448	30.0	0.25%	80.6	0.22%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.384e+00	0.6462	1186.0	9.94%	3564.2	9.76%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.383e+00	0.6462	211.0	1.77%	616.8	1.69%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.383e+00	0.6462	1072.0	8.99%	3218.0	8.81%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.374e+00	0.6481	152.0	1.27%	440.6	1.21%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.373e+00	0.6481	32.0	0.27%	86.7	0.24%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.369e+00	0.6481	3164.0	26.53%	9591.4	26.26%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.367e+00	0.6481	1577.0	13.22%	4754.5	13.02%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.358e+00	0.6517	394.0	3.30%	1167.9	3.20%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.356e+00	0.6517	1874.0	15.71%	5659.3	15.49%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.339e+00	0.6606	864.0	7.24%	2590.5	7.09%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-1.338e+00	0.6606	399.0	3.35%	1183.3	3.24%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-1.332e+00	0.6621	3457.0	28.98%	10490.2	28.72%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.327e+00	0.6636	985.0	8.26%	2958.5	8.10%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.324e+00	0.6639	240.0	2.01%	705.6	1.93%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.324e+00	0.6639	831.0	6.97%	2491.9	6.82%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.322e+00	0.6639	124.0	1.04%	358.4	0.98%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.322e+00	0.6639	4.0	0.03%	8.4	0.02%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.299e+00	0.6743	172.0	1.44%	502.2	1.37%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-1.285e+00	0.6820	123.0	1.03%	356.5	0.98%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.278e+00	0.6854	493.0	4.13%	1470.4	4.03%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.273e+00	0.6870	250.0	2.10%	737.3	2.02%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.272e+00	0.6870	150.0	1.26%	437.0	1.20%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-1.262e+00	0.6909	962.0	8.07%	2893.0	7.92%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.256e+00	0.6938	895.0	7.50%	2690.8	7.37%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.250e+00	0.6961	964.0	8.08%	2900.1	7.94%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-1.246e+00	0.6972	540.0	4.53%	1614.4	4.42%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.241e+00	0.6989	141.0	1.18%	411.6	1.13%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.239e+00	0.6991	967.0	8.11%	2910.6	7.97%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.238e+00	0.6991	161.0	1.35%	471.6	1.29%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.224e+00	0.7058	6933.0	58.13%	21141.5	57.88%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.224e+00	0.7058	529.0	4.44%	1582.4	4.33%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.219e+00	0.7064	979.0	8.21%	2948.4	8.07%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-1.217e+00	0.7064	401.0	3.36%	1195.4	3.27%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.216e+00	0.7064	301.0	2.52%	893.8	2.45%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.202e+00	0.7135	262.0	2.20%	776.8	2.13%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.198e+00	0.7142	54.0	0.45%	153.5	0.42%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-1.194e+00	0.7156	1617.0	13.56%	4893.0	13.40%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.191e+00	0.7158	1717.0	14.40%	5197.0	14.23%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.191e+00	0.7158	626.0	5.25%	1878.3	5.14%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.183e+00	0.7181	1466.0	12.29%	4433.1	12.14%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.178e+00	0.7207	360.0	3.02%	1073.1	2.94%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.174e+00	0.7219	3165.0	26.54%	9618.7	26.33%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.173e+00	0.7219	67.0	0.56%	192.7	0.53%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.165e+00	0.7244	1022.0	8.57%	3083.2	8.44%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.160e+00	0.7264	366.0	3.07%	1092.8	2.99%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.160e+00	0.7264	214.0	1.79%	633.7	1.73%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.147e+00	0.7329	296.0	2.48%	881.7	2.41%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.146e+00	0.7329	338.0	2.83%	1008.2	2.76%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.142e+00	0.7333	592.0	4.96%	1778.4	4.87%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.132e+00	0.7385	788.0	6.61%	2374.3	6.50%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.122e+00	0.7449	11901.0	99.78%	36437.3	99.76%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.121e+00	0.7449	664.0	5.57%	1998.4	5.47%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.121e+00	0.7449	176.0	1.48%	520.8	1.43%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.119e+00	0.7449	1686.0	14.14%	5110.3	13.99%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-1.111e+00	0.7457	2220.0	18.61%	6740.1	18.45%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-1.103e+00	0.7502	759.0	6.36%	2288.8	6.27%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.098e+00	0.7523	189.0	1.58%	560.6	1.53%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-1.096e+00	0.7525	565.0	4.74%	1699.4	4.65%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.094e+00	0.7525	1199.0	10.05%	3629.0	9.94%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.090e+00	0.7532	528.0	4.43%	1587.8	4.35%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.090e+00	0.7532	30.0	0.25%	84.8	0.23%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.086e+00	0.7532	576.0	4.83%	1733.2	4.75%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.083e+00	0.7539	32.0	0.27%	90.8	0.25%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.080e+00	0.7543	1644.0	13.78%	4986.7	13.65%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.075e+00	0.7559	354.0	2.97%	1060.8	2.90%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.075e+00	0.7559	117.0	0.98%	344.5	0.94%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.073e+00	0.7559	102.0	0.86%	299.3	0.82%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.070e+00	0.7559	377.0	3.16%	1130.7	3.10%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.067e+00	0.7559	270.0	2.26%	806.1	2.21%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.061e+00	0.7589	1090.0	9.14%	3299.9	9.03%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-1.055e+00	0.7611	1372.0	11.50%	4159.2	11.39%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.053e+00	0.7612	1686.0	14.14%	5117.0	14.01%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.053e+00	0.7612	1118.0	9.37%	3385.6	9.27%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.034e+00	0.7727	11910.0	99.86%	36467.2	99.84%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.033e+00	0.7727	820.0	6.88%	2479.5	6.79%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.031e+00	0.7727	632.0	5.30%	1907.0	5.22%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.029e+00	0.7727	2569.0	21.54%	7816.2	21.40%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.027e+00	0.7727	963.0	8.07%	2915.3	7.98%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.020e+00	0.7749	31.0	0.26%	88.4	0.24%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.016e+00	0.7767	405.0	3.40%	1218.7	3.34%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.016e+00	0.7767	14.0	0.12%	38.1	0.10%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.011e+00	0.7774	2252.0	18.88%	6850.6	18.75%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.009e+00	0.7774	2193.0	18.39%	6670.1	18.26%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.005e+00	0.7782	749.0	6.28%	2265.2	6.20%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-1.003e+00	0.7782	1733.0	14.53%	5266.0	14.42%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.001e+00	0.7782	16.0	0.13%	44.6	0.12%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-9.905e-01	0.7833	18.0	0.15%	50.3	0.14%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-9.905e-01	0.7833	18.0	0.15%	50.5	0.14%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-9.857e-01	0.7854	244.0	2.05%	731.7	2.00%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-9.829e-01	0.7859	1266.0	10.61%	3843.2	10.52%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-9.820e-01	0.7859	20.0	0.17%	56.5	0.15%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-9.677e-01	0.7947	1448.0	12.14%	4401.0	12.05%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.626e-01	0.7971	178.0	1.49%	532.5	1.46%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-9.567e-01	0.8001	77.0	0.65%	227.4	0.62%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-9.494e-01	0.8043	49.0	0.41%	143.2	0.39%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.494e-01	0.8043	50.0	0.42%	146.5	0.40%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-9.429e-01	0.8062	2854.0	23.93%	8699.9	23.82%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-9.320e-01	0.8134	952.0	7.98%	2891.0	7.91%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-9.308e-01	0.8134	169.0	1.42%	506.7	1.39%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-9.186e-01	0.8210	1715.0	14.38%	5221.4	14.29%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-9.175e-01	0.8210	5035.0	42.22%	15376.8	42.10%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-9.152e-01	0.8210	471.0	3.95%	1425.7	3.90%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-9.147e-01	0.8210	1358.0	11.39%	4131.5	11.31%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.115e-01	0.8210	65.0	0.54%	192.7	0.53%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-9.015e-01	0.8267	1257.0	10.54%	3825.0	10.47%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.989e-01	0.8272	39.0	0.33%	114.7	0.31%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-8.948e-01	0.8289	184.0	1.54%	553.8	1.52%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.861e-01	0.8345	174.0	1.46%	523.1	1.43%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-8.843e-01	0.8345	572.0	4.80%	1735.3	4.75%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-8.832e-01	0.8345	143.0	1.20%	429.4	1.18%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.739e-01	0.8397	133.0	1.12%	399.6	1.09%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-8.730e-01	0.8397	732.0	6.14%	2224.2	6.09%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-8.724e-01	0.8397	368.0	3.09%	1114.2	3.05%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.684e-01	0.8397	275.0	2.31%	831.1	2.28%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-8.649e-01	0.8405	57.0	0.48%	170.0	0.47%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-8.641e-01	0.8405	1525.0	12.79%	4647.2	12.72%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-8.560e-01	0.8446	1842.0	15.44%	5617.0	15.38%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.538e-01	0.8449	1503.0	12.60%	4581.6	12.54%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-8.467e-01	0.8492	708.0	5.94%	2154.0	5.90%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-8.413e-01	0.8521	199.0	1.67%	601.7	1.65%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-8.393e-01	0.8522	99.0	0.83%	297.6	0.81%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.359e-01	0.8534	301.0	2.52%	912.6	2.50%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-8.359e-01	0.8534	96.0	0.80%	288.7	0.79%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-8.324e-01	0.8534	960.0	8.05%	2924.4	8.01%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-8.287e-01	0.8534	208.0	1.74%	629.8	1.72%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-8.287e-01	0.8534	208.0	1.74%	629.3	1.72%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-8.243e-01	0.8550	246.0	2.06%	745.7	2.04%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.239e-01	0.8550	1194.0	10.01%	3640.2	9.97%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-8.142e-01	0.8604	413.0	3.46%	1255.8	3.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.103e-01	0.8620	46.0	0.39%	137.7	0.38%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-8.018e-01	0.8678	2243.0	18.81%	6851.6	18.76%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-7.822e-01	0.8832	354.0	2.97%	1077.1	2.95%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.820e-01	0.8832	260.0	2.18%	790.1	2.16%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.770e-01	0.8844	879.0	7.37%	2682.5	7.34%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-7.760e-01	0.8844	860.0	7.21%	2624.4	7.18%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-7.676e-01	0.8894	46.0	0.39%	138.9	0.38%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.611e-01	0.8935	293.0	2.46%	892.6	2.44%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.594e-01	0.8935	416.0	3.49%	1268.8	3.47%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.458e-01	0.9038	673.0	5.64%	2055.4	5.63%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-7.397e-01	0.9076	1331.0	11.16%	4069.6	11.14%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-7.387e-01	0.9076	4635.0	38.86%	14184.8	38.83%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-7.301e-01	0.9129	1803.0	15.12%	5515.8	15.10%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.300e-01	0.9129	565.0	4.74%	1726.3	4.73%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.196e-01	0.9191	1011.0	8.48%	3092.5	8.47%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.178e-01	0.9191	1416.0	11.87%	4333.0	11.86%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-7.169e-01	0.9191	1006.0	8.43%	3077.7	8.43%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-7.152e-01	0.9191	279.0	2.34%	852.2	2.33%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-7.144e-01	0.9191	936.0	7.85%	2864.0	7.84%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-7.122e-01	0.9191	638.0	5.35%	1951.9	5.34%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-7.108e-01	0.9191	158.0	1.32%	482.4	1.32%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.094e-01	0.9191	273.0	2.29%	834.5	2.28%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-7.085e-01	0.9191	1849.0	15.50%	5659.3	15.49%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-7.056e-01	0.9191	449.0	3.76%	1373.7	3.76%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.038e-01	0.9191	1418.0	11.89%	4340.9	11.88%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-7.027e-01	0.9191	640.0	5.37%	1958.8	5.36%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-7.010e-01	0.9191	5782.0	48.48%	17704.3	48.47%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-6.985e-01	0.9191	1294.0	10.85%	3961.2	10.84%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.963e-01	0.9191	66.0	0.55%	201.8	0.55%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-6.959e-01	0.9191	17.0	0.14%	52.0	0.14%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.920e-01	0.9191	2370.0	19.87%	7257.9	19.87%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.913e-01	0.9191	271.0	2.27%	829.9	2.27%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-6.822e-01	0.9229	168.0	1.41%	514.3	1.41%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-6.795e-01	0.9238	1604.0	13.45%	4913.3	13.45%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.781e-01	0.9238	761.0	6.38%	2331.9	6.38%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-6.779e-01	0.9238	666.0	5.58%	2040.8	5.59%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.779e-01	0.9238	103.0	0.86%	315.5	0.86%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.692e-01	0.9266	1375.0	11.53%	4213.1	11.53%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-6.690e-01	0.9266	887.0	7.44%	2719.0	7.44%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-6.688e-01	0.9266	1075.0	9.01%	3294.2	9.02%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.675e-01	0.9266	1403.0	11.76%	4299.7	11.77%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.615e-01	0.9271	983.0	8.24%	3013.2	8.25%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-6.562e-01	0.9303	1394.0	11.69%	4273.9	11.70%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-6.560e-01	0.9303	725.0	6.08%	2223.8	6.09%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-6.557e-01	0.9303	282.0	2.36%	865.9	2.37%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.548e-01	0.9303	955.0	8.01%	2928.5	8.02%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-6.547e-01	0.9303	1110.0	9.31%	3403.8	9.32%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.491e-01	0.9303	380.0	3.19%	1167.0	3.19%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-6.475e-01	0.9303	215.0	1.80%	660.9	1.81%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.470e-01	0.9303	32.0	0.27%	98.1	0.27%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.323e-01	0.9395	28.0	0.23%	86.2	0.24%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-6.318e-01	0.9395	2645.0	22.18%	8110.7	22.20%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-6.260e-01	0.9421	633.0	5.31%	1944.4	5.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.254e-01	0.9421	50.0	0.42%	154.9	0.42%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-6.169e-01	0.9474	136.0	1.14%	419.2	1.15%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.154e-01	0.9474	2256.0	18.92%	6921.5	18.95%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-6.124e-01	0.9483	3165.0	26.54%	9707.8	26.58%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.094e-01	0.9496	13.0	0.11%	40.1	0.11%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-6.058e-01	0.9513	911.0	7.64%	2799.8	7.67%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.010e-01	0.9543	313.0	2.62%	964.4	2.64%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-6.007e-01	0.9543	481.0	4.03%	1480.8	4.05%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-6.002e-01	0.9543	31.0	0.26%	96.5	0.26%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-5.932e-01	0.9568	278.0	2.33%	857.2	2.35%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-5.819e-01	0.9659	2606.0	21.85%	8000.6	21.90%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-5.785e-01	0.9676	5667.0	47.51%	17379.3	47.58%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-5.745e-01	0.9698	3.0	0.03%	9.0	0.02%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-5.685e-01	0.9739	85.0	0.71%	264.9	0.73%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-5.680e-01	0.9739	1350.0	11.32%	4151.5	11.37%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-5.667e-01	0.9739	2728.0	22.87%	8377.8	22.94%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-5.661e-01	0.9739	397.0	3.33%	1225.7	3.36%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-5.660e-01	0.9739	1127.0	9.45%	3467.2	9.49%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-5.568e-01	0.9771	698.0	5.85%	2151.0	5.89%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-5.539e-01	0.9783	396.0	3.32%	1223.1	3.35%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-5.536e-01	0.9783	2992.0	25.09%	9189.5	25.16%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.456e-01	0.9831	1590.0	13.33%	4891.0	13.39%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-5.453e-01	0.9831	75.0	0.63%	234.6	0.64%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-5.433e-01	0.9831	1599.0	13.41%	4919.3	13.47%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-5.428e-01	0.9831	74.0	0.62%	231.6	0.63%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.398e-01	0.9831	2.0	0.02%	6.7	0.02%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.396e-01	0.9831	44.0	0.37%	138.9	0.38%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-5.351e-01	0.9835	26.0	0.22%	82.8	0.23%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.333e-01	0.9836	178.0	1.49%	553.2	1.51%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.308e-01	0.9844	930.0	7.80%	2867.3	7.85%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-5.272e-01	0.9864	1076.0	9.02%	3316.3	9.08%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-5.180e-01	0.9938	947.0	7.94%	2921.7	8.00%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-5.180e-01	0.9938	319.0	2.67%	989.4	2.71%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.160e-01	0.9938	10.0	0.08%	32.5	0.09%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-5.148e-01	0.9938	900.0	7.55%	2777.1	7.60%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-5.107e-01	0.9945	758.0	6.36%	2341.3	6.41%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.066e-01	0.9970	52.0	0.44%	164.9	0.45%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-5.038e-01	0.9981	158.0	1.32%	493.2	1.35%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-4.978e-01	1.0000	684.0	5.73%	2115.3	5.79%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.977e-01	1.0000	443.0	3.71%	1373.8	3.76%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-4.930e-01	1.0000	1672.0	14.02%	5152.1	14.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.865e-01	1.0000	288.0	2.41%	896.6	2.45%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.847e-01	1.0000	275.0	2.31%	856.1	2.34%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-4.837e-01	1.0000	18.0	0.15%	58.0	0.16%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-4.830e-01	1.0000	1688.0	14.15%	5203.8	14.25%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-4.788e-01	1.0000	616.0	5.16%	1908.1	5.22%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-4.776e-01	1.0000	1409.0	11.81%	4347.6	11.90%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-4.767e-01	1.0000	290.0	2.43%	903.3	2.47%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-4.738e-01	1.0000	29.0	0.24%	93.9	0.26%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.732e-01	1.0000	1606.0	13.47%	4953.6	13.56%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-4.701e-01	1.0000	741.0	6.21%	2295.0	6.28%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.695e-01	1.0000	702.0	5.89%	2174.1	5.95%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-4.681e-01	1.0000	725.0	6.08%	2245.5	6.15%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-4.648e-01	1.0000	732.0	6.14%	2267.5	6.21%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.615e-01	1.0000	1062.0	8.90%	3283.9	8.99%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-4.584e-01	1.0000	1943.0	16.29%	5991.3	16.40%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.570e-01	1.0000	987.0	8.28%	3053.4	8.36%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-4.563e-01	1.0000	3.0	0.03%	10.5	0.03%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-4.550e-01	1.0000	2619.0	21.96%	8067.2	22.09%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.534e-01	1.0000	6.0	0.05%	20.8	0.06%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-4.499e-01	1.0000	1504.0	12.61%	4644.8	12.72%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-4.492e-01	1.0000	254.0	2.13%	794.6	2.18%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-4.489e-01	1.0000	44.0	0.37%	141.2	0.39%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-4.474e-01	1.0000	715.0	5.99%	2217.9	6.07%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-4.411e-01	1.0000	955.0	8.01%	2957.7	8.10%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.395e-01	1.0000	18.0	0.15%	59.1	0.16%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-4.341e-01	1.0000	401.0	3.36%	1250.6	3.42%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-4.308e-01	1.0000	17.0	0.14%	56.6	0.15%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.305e-01	1.0000	419.0	3.51%	1306.6	3.58%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-4.303e-01	1.0000	289.0	2.42%	904.5	2.48%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.301e-01	1.0000	5.0	0.04%	17.2	0.05%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.274e-01	1.0000	74.0	0.62%	236.7	0.65%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-4.263e-01	1.0000	205.0	1.72%	644.8	1.77%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.250e-01	1.0000	583.0	4.89%	1813.6	4.97%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-4.237e-01	1.0000	581.0	4.87%	1807.5	4.95%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-4.229e-01	1.0000	21.0	0.18%	69.8	0.19%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.176e-01	1.0000	31.0	0.26%	101.5	0.28%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-4.152e-01	1.0000	169.0	1.42%	533.6	1.46%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-4.119e-01	1.0000	15.0	0.13%	50.1	0.14%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-4.079e-01	1.0000	435.0	3.65%	1358.3	3.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.078e-01	1.0000	288.0	2.41%	903.5	2.47%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.036e-01	1.0000	119.0	1.00%	378.3	1.04%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-4.023e-01	1.0000	1278.0	10.72%	3958.4	10.84%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-3.987e-01	1.0000	350.0	2.93%	1096.5	3.00%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.949e-01	1.0000	38.0	0.32%	124.0	0.34%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-3.947e-01	1.0000	594.0	4.98%	1851.5	5.07%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.935e-01	1.0000	56.0	0.47%	181.7	0.50%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.896e-01	1.0000	654.0	5.48%	2037.7	5.58%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-3.851e-01	1.0000	1491.0	12.50%	4617.4	12.64%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-3.843e-01	1.0000	760.0	6.37%	2365.0	6.47%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-3.841e-01	1.0000	458.0	3.84%	1432.8	3.92%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-3.839e-01	1.0000	1856.0	15.56%	5740.7	15.72%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.834e-01	1.0000	384.0	3.22%	1203.0	3.29%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.834e-01	1.0000	109.0	0.91%	348.3	0.95%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-3.795e-01	1.0000	615.0	5.16%	1919.0	5.25%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-3.778e-01	1.0000	818.0	6.86%	2545.5	6.97%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-3.708e-01	1.0000	472.0	3.96%	1477.3	4.04%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-3.677e-01	1.0000	927.0	7.77%	2883.7	7.89%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-3.668e-01	1.0000	1672.0	14.02%	5178.4	14.18%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-3.626e-01	1.0000	3.0	0.03%	11.4	0.03%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-3.626e-01	1.0000	3.0	0.03%	11.5	0.03%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-3.599e-01	1.0000	795.0	6.67%	2477.1	6.78%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.552e-01	1.0000	156.0	1.31%	497.5	1.36%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-3.545e-01	1.0000	89.0	0.75%	287.1	0.79%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.474e-01	1.0000	67.0	0.56%	218.4	0.60%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-3.435e-01	1.0000	1640.0	13.75%	5085.6	13.92%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-3.404e-01	1.0000	245.0	2.05%	776.2	2.13%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-3.397e-01	1.0000	511.0	4.28%	1602.6	4.39%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.384e-01	1.0000	161.0	1.35%	514.4	1.41%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.287e-01	1.0000	140.0	1.17%	449.5	1.23%
 Ik-1	NHTTGGGAATRCC	1e0	-3.265e-01	1.0000	11927.0	100.00%	36526.8	100.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.259e-01	1.0000	30.0	0.25%	101.5	0.28%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-3.258e-01	1.0000	541.0	4.54%	1697.6	4.65%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-3.258e-01	1.0000	461.0	3.87%	1449.5	3.97%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-3.212e-01	1.0000	819.0	6.87%	2558.7	7.00%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-3.193e-01	1.0000	1566.0	13.13%	4863.4	13.31%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.176e-01	1.0000	87.0	0.73%	283.2	0.78%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-3.148e-01	1.0000	1098.0	9.21%	3421.9	9.37%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.127e-01	1.0000	424.0	3.55%	1336.9	3.66%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-3.125e-01	1.0000	3112.0	26.09%	9620.9	26.34%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.093e-01	1.0000	915.0	7.67%	2857.7	7.82%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-3.069e-01	1.0000	10.0	0.08%	36.7	0.10%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.041e-01	1.0000	54.0	0.45%	179.3	0.49%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-3.008e-01	1.0000	26.0	0.22%	89.5	0.24%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-2.992e-01	1.0000	195.0	1.63%	624.5	1.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.912e-01	1.0000	1372.0	11.50%	4272.1	11.70%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.906e-01	1.0000	852.0	7.14%	2666.4	7.30%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.849e-01	1.0000	116.0	0.97%	377.1	1.03%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-2.841e-01	1.0000	450.0	3.77%	1421.5	3.89%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.835e-01	1.0000	74.0	0.62%	245.0	0.67%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.830e-01	1.0000	31.0	0.26%	106.5	0.29%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.810e-01	1.0000	196.0	1.64%	629.6	1.72%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.805e-01	1.0000	2197.0	18.42%	6817.6	18.66%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-2.757e-01	1.0000	292.0	2.45%	930.3	2.55%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.740e-01	1.0000	13.0	0.11%	47.6	0.13%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-2.669e-01	1.0000	113.0	0.95%	369.3	1.01%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.654e-01	1.0000	647.0	5.42%	2036.2	5.57%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-2.637e-01	1.0000	2552.0	21.40%	7915.3	21.67%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.574e-01	1.0000	820.0	6.88%	2574.9	7.05%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.557e-01	1.0000	55.0	0.46%	185.8	0.51%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-2.533e-01	1.0000	217.0	1.82%	698.8	1.91%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.522e-01	1.0000	709.0	5.94%	2231.6	6.11%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-2.520e-01	1.0000	148.0	1.24%	482.0	1.32%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.512e-01	1.0000	592.0	4.96%	1869.0	5.12%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-2.506e-01	1.0000	1867.0	15.65%	5810.2	15.91%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-2.494e-01	1.0000	1683.0	14.11%	5243.4	14.35%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.423e-01	1.0000	897.0	7.52%	2816.6	7.71%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.404e-01	1.0000	227.0	1.90%	731.5	2.00%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.384e-01	1.0000	403.0	3.38%	1282.3	3.51%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.356e-01	1.0000	77.0	0.65%	257.3	0.70%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-2.356e-01	1.0000	77.0	0.65%	258.0	0.71%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.312e-01	1.0000	147.0	1.23%	480.5	1.32%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.299e-01	1.0000	17.0	0.14%	62.8	0.17%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-2.292e-01	1.0000	2292.0	19.22%	7128.0	19.51%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-2.287e-01	1.0000	1561.0	13.09%	4873.1	13.34%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.281e-01	1.0000	524.0	4.39%	1661.5	4.55%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.281e-01	1.0000	472.0	3.96%	1499.6	4.11%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.259e-01	1.0000	51.0	0.43%	174.8	0.48%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.205e-01	1.0000	152.0	1.27%	497.5	1.36%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-2.180e-01	1.0000	541.0	4.54%	1716.0	4.70%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-2.175e-01	1.0000	620.0	5.20%	1962.8	5.37%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.143e-01	1.0000	13.0	0.11%	49.4	0.14%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-2.136e-01	1.0000	1233.0	10.34%	3864.2	10.58%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.108e-01	1.0000	412.0	3.45%	1315.4	3.60%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-2.102e-01	1.0000	2946.0	24.70%	9148.4	25.05%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-2.101e-01	1.0000	468.0	3.92%	1490.4	4.08%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-2.082e-01	1.0000	719.0	6.03%	2272.6	6.22%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-2.080e-01	1.0000	4033.0	33.81%	12490.9	34.20%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.078e-01	1.0000	100.0	0.84%	333.5	0.91%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.050e-01	1.0000	476.0	3.99%	1516.6	4.15%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-2.047e-01	1.0000	334.0	2.80%	1072.0	2.93%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.043e-01	1.0000	38.0	0.32%	133.7	0.37%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.043e-01	1.0000	38.0	0.32%	133.7	0.37%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-2.039e-01	1.0000	2041.0	17.11%	6364.0	17.42%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.039e-01	1.0000	363.0	3.04%	1163.3	3.18%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.032e-01	1.0000	10.0	0.08%	39.5	0.11%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.998e-01	1.0000	830.0	6.96%	2619.4	7.17%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.998e-01	1.0000	37.0	0.31%	130.5	0.36%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.975e-01	1.0000	563.0	4.72%	1789.4	4.90%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-1.969e-01	1.0000	159.0	1.33%	522.7	1.43%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.909e-01	1.0000	302.0	2.53%	974.8	2.67%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.885e-01	1.0000	77.0	0.65%	261.0	0.71%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.826e-01	1.0000	1121.0	9.40%	3527.6	9.66%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.824e-01	1.0000	1061.0	8.90%	3341.6	9.15%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.808e-01	1.0000	2914.0	24.43%	9063.7	24.81%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.772e-01	1.0000	3996.0	33.50%	12392.9	33.93%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.771e-01	1.0000	252.0	2.11%	819.9	2.24%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-1.730e-01	1.0000	1727.0	14.48%	5406.4	14.80%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.706e-01	1.0000	1553.0	13.02%	4869.3	13.33%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.703e-01	1.0000	47.0	0.39%	165.1	0.45%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.697e-01	1.0000	213.0	1.79%	697.6	1.91%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-1.693e-01	1.0000	114.0	0.96%	383.0	1.05%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.638e-01	1.0000	917.0	7.69%	2900.4	7.94%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.637e-01	1.0000	1481.0	12.42%	4649.1	12.73%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.623e-01	1.0000	1765.0	14.80%	5528.5	15.14%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.621e-01	1.0000	9.0	0.08%	37.1	0.10%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.591e-01	1.0000	108.0	0.91%	364.4	1.00%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.584e-01	1.0000	77.0	0.65%	264.0	0.72%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.579e-01	1.0000	1920.0	16.10%	6009.5	16.45%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.568e-01	1.0000	189.0	1.58%	623.4	1.71%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-1.537e-01	1.0000	4240.0	35.55%	13155.3	36.02%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.513e-01	1.0000	157.0	1.32%	522.2	1.43%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.508e-01	1.0000	55.0	0.46%	193.4	0.53%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.491e-01	1.0000	145.0	1.22%	484.9	1.33%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.463e-01	1.0000	29.0	0.24%	107.8	0.30%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.461e-01	1.0000	158.0	1.32%	526.0	1.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.418e-01	1.0000	947.0	7.94%	3001.2	8.22%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.393e-01	1.0000	333.0	2.79%	1082.7	2.96%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.385e-01	1.0000	306.0	2.57%	997.3	2.73%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.368e-01	1.0000	83.0	0.70%	287.0	0.79%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.366e-01	1.0000	108.0	0.91%	367.9	1.01%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.364e-01	1.0000	20.0	0.17%	77.4	0.21%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.335e-01	1.0000	138.0	1.16%	464.2	1.27%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.316e-01	1.0000	192.0	1.61%	637.9	1.75%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.285e-01	1.0000	103.0	0.86%	352.1	0.96%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-1.280e-01	1.0000	1060.0	8.89%	3358.3	9.19%
Tal1	CATCTG	1e0	-1.242e-01	1.0000	965.0	8.09%	3064.6	8.39%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.233e-01	1.0000	27.0	0.23%	102.3	0.28%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.196e-01	1.0000	1054.0	8.84%	3343.3	9.15%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.187e-01	1.0000	962.0	8.07%	3057.0	8.37%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.183e-01	1.0000	883.0	7.40%	2811.3	7.70%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.182e-01	1.0000	350.0	2.93%	1141.5	3.13%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.180e-01	1.0000	942.0	7.90%	2995.9	8.20%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.141e-01	1.0000	1857.0	15.57%	5837.3	15.98%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.132e-01	1.0000	848.0	7.11%	2704.2	7.40%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.130e-01	1.0000	178.0	1.49%	596.4	1.63%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.116e-01	1.0000	162.0	1.36%	545.8	1.49%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.067e-01	1.0000	260.0	2.18%	859.7	2.35%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.022e-01	1.0000	191.0	1.60%	641.0	1.75%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.012e-01	1.0000	332.0	2.78%	1089.5	2.98%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-9.932e-02	1.0000	89.0	0.75%	311.5	0.85%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-9.894e-02	1.0000	408.0	3.42%	1330.7	3.64%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-9.774e-02	1.0000	74.0	0.62%	262.3	0.72%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.721e-02	1.0000	38.0	0.32%	142.3	0.39%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-9.681e-02	1.0000	455.0	3.81%	1479.3	4.05%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.540e-02	1.0000	847.0	7.10%	2709.3	7.42%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-9.527e-02	1.0000	1558.0	13.06%	4922.8	13.48%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-9.474e-02	1.0000	286.0	2.40%	945.8	2.59%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-9.453e-02	1.0000	796.0	6.67%	2550.2	6.98%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-9.378e-02	1.0000	104.0	0.87%	361.6	0.99%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-9.326e-02	1.0000	1202.0	10.08%	3817.3	10.45%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-9.301e-02	1.0000	519.0	4.35%	1682.4	4.61%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-9.123e-02	1.0000	1900.0	15.93%	5985.3	16.39%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-9.044e-02	1.0000	117.0	0.98%	405.0	1.11%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-8.990e-02	1.0000	763.0	6.40%	2449.0	6.70%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-8.868e-02	1.0000	140.0	1.17%	479.1	1.31%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-8.585e-02	1.0000	271.0	2.27%	900.5	2.47%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-8.363e-02	1.0000	560.0	4.70%	1815.8	4.97%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-8.305e-02	1.0000	403.0	3.38%	1321.0	3.62%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-7.791e-02	1.0000	5604.0	46.99%	17401.9	47.64%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-7.786e-02	1.0000	860.0	7.21%	2759.1	7.55%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.618e-02	1.0000	1.0	0.01%	8.2	0.02%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.550e-02	1.0000	84.0	0.70%	299.6	0.82%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-7.374e-02	1.0000	422.0	3.54%	1384.1	3.79%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.286e-02	1.0000	58.0	0.49%	213.6	0.58%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-7.154e-02	1.0000	208.0	1.74%	703.2	1.93%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-7.040e-02	1.0000	28.0	0.23%	111.7	0.31%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.980e-02	1.0000	713.0	5.98%	2303.7	6.31%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.672e-02	1.0000	115.0	0.96%	403.8	1.11%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-6.424e-02	1.0000	498.0	4.18%	1629.5	4.46%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-6.263e-02	1.0000	9.0	0.08%	43.9	0.12%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.208e-02	1.0000	273.0	2.29%	915.2	2.51%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.098e-02	1.0000	106.0	0.89%	375.2	1.03%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-5.990e-02	1.0000	362.0	3.04%	1200.7	3.29%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-5.632e-02	1.0000	242.0	2.03%	818.4	2.24%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-5.588e-02	1.0000	40.0	0.34%	155.0	0.42%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-5.579e-02	1.0000	289.0	2.42%	969.1	2.65%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-5.436e-02	1.0000	1.0	0.01%	9.8	0.03%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-5.396e-02	1.0000	1393.0	11.68%	4441.4	12.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.373e-02	1.0000	2076.0	17.41%	6564.9	17.97%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-5.321e-02	1.0000	6.0	0.05%	32.0	0.09%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.181e-02	1.0000	57.0	0.48%	214.0	0.59%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-5.165e-02	1.0000	34.0	0.29%	135.4	0.37%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-5.143e-02	1.0000	454.0	3.81%	1497.5	4.10%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-5.143e-02	1.0000	454.0	3.81%	1497.5	4.10%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.139e-02	1.0000	645.0	5.41%	2101.9	5.75%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.064e-02	1.0000	26.0	0.22%	107.7	0.29%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.903e-02	1.0000	1107.0	9.28%	3554.0	9.73%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.841e-02	1.0000	466.0	3.91%	1537.7	4.21%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-4.840e-02	1.0000	4.0	0.03%	24.9	0.07%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-4.784e-02	1.0000	747.0	6.26%	2425.6	6.64%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-4.710e-02	1.0000	444.0	3.72%	1468.5	4.02%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-4.587e-02	1.0000	107.0	0.90%	383.5	1.05%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.585e-02	1.0000	889.0	7.45%	2873.9	7.87%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-4.553e-02	1.0000	2841.0	23.82%	8943.2	24.48%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.541e-02	1.0000	159.0	1.33%	554.9	1.52%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-4.445e-02	1.0000	1393.0	11.68%	4451.7	12.19%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-4.357e-02	1.0000	576.0	4.83%	1889.5	5.17%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.319e-02	1.0000	277.0	2.32%	937.1	2.57%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.280e-02	1.0000	1889.0	15.84%	5997.3	16.42%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-4.206e-02	1.0000	188.0	1.58%	650.6	1.78%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-4.165e-02	1.0000	2410.0	20.21%	7615.4	20.85%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.078e-02	1.0000	786.0	6.59%	2554.9	6.99%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-4.062e-02	1.0000	372.0	3.12%	1243.8	3.41%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.868e-02	1.0000	51.0	0.43%	197.8	0.54%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-3.797e-02	1.0000	502.0	4.21%	1659.7	4.54%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-3.748e-02	1.0000	244.0	2.05%	834.9	2.29%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-3.624e-02	1.0000	477.0	4.00%	1581.4	4.33%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-3.490e-02	1.0000	1894.0	15.88%	6024.6	16.49%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.385e-02	1.0000	157.0	1.32%	553.3	1.51%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-3.333e-02	1.0000	524.0	4.39%	1733.8	4.75%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-3.175e-02	1.0000	555.0	4.65%	1833.6	5.02%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-3.144e-02	1.0000	79.0	0.66%	295.3	0.81%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-3.136e-02	1.0000	422.0	3.54%	1410.9	3.86%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.094e-02	1.0000	875.0	7.34%	2845.1	7.79%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-3.020e-02	1.0000	1123.0	9.42%	3625.3	9.93%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-2.785e-02	1.0000	1054.0	8.84%	3412.5	9.34%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.529e-02	1.0000	322.0	2.70%	1095.3	3.00%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-2.381e-02	1.0000	166.0	1.39%	589.8	1.61%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-2.273e-02	1.0000	116.0	0.97%	424.4	1.16%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-2.153e-02	1.0000	84.0	0.70%	317.2	0.87%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-2.032e-02	1.0000	398.0	3.34%	1345.5	3.68%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.942e-02	1.0000	826.0	6.93%	2708.9	7.42%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.877e-02	1.0000	1295.0	10.86%	4185.6	11.46%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.784e-02	1.0000	832.0	6.98%	2730.7	7.48%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.741e-02	1.0000	993.0	8.33%	3239.3	8.87%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.737e-02	1.0000	627.0	5.26%	2081.6	5.70%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.684e-02	1.0000	123.0	1.03%	452.6	1.24%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-1.678e-02	1.0000	660.0	5.53%	2187.4	5.99%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.663e-02	1.0000	137.0	1.15%	499.9	1.37%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.659e-02	1.0000	444.0	3.72%	1498.8	4.10%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.647e-02	1.0000	219.0	1.84%	770.5	2.11%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.587e-02	1.0000	220.0	1.84%	774.0	2.12%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.585e-02	1.0000	747.0	6.26%	2465.6	6.75%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.542e-02	1.0000	353.0	2.96%	1207.2	3.30%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.493e-02	1.0000	1670.0	14.00%	5369.1	14.70%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.476e-02	1.0000	215.0	1.80%	759.8	2.08%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.345e-02	1.0000	230.0	1.93%	810.8	2.22%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.301e-02	1.0000	649.0	5.44%	2160.7	5.92%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.297e-02	1.0000	611.0	5.12%	2039.8	5.58%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.287e-02	1.0000	680.0	5.70%	2259.6	6.19%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.266e-02	1.0000	125.0	1.05%	463.7	1.27%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.258e-02	1.0000	879.0	7.37%	2891.4	7.92%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.240e-02	1.0000	625.0	5.24%	2085.3	5.71%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-1.232e-02	1.0000	1038.0	8.70%	3394.1	9.29%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-1.205e-02	1.0000	834.0	6.99%	2750.8	7.53%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.205e-02	1.0000	38.0	0.32%	163.7	0.45%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.198e-02	1.0000	182.0	1.53%	654.1	1.79%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-1.134e-02	1.0000	664.0	5.57%	2213.0	6.06%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.132e-02	1.0000	1272.0	10.66%	4134.1	11.32%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.131e-02	1.0000	992.0	8.32%	3252.6	8.90%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.074e-02	1.0000	29.0	0.24%	131.3	0.36%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-9.854e-03	1.0000	273.0	2.29%	957.7	2.62%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-9.202e-03	1.0000	78.0	0.65%	307.7	0.84%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-9.199e-03	1.0000	851.0	7.14%	2813.9	7.70%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-9.157e-03	1.0000	168.0	1.41%	612.6	1.68%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-8.920e-03	1.0000	1221.0	10.24%	3983.3	10.91%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-8.791e-03	1.0000	650.0	5.45%	2175.0	5.95%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-8.748e-03	1.0000	1176.0	9.86%	3842.2	10.52%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-8.612e-03	1.0000	53.0	0.44%	220.9	0.60%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-8.054e-03	1.0000	111.0	0.93%	422.4	1.16%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-7.570e-03	1.0000	162.0	1.36%	595.6	1.63%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.437e-03	1.0000	194.0	1.63%	702.8	1.92%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-7.253e-03	1.0000	2524.0	21.16%	8066.2	22.08%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.563e-03	1.0000	2909.0	24.39%	9267.9	25.37%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.450e-03	1.0000	172.0	1.44%	631.1	1.73%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.360e-03	1.0000	931.0	7.81%	3079.8	8.43%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.212e-03	1.0000	148.0	1.24%	552.0	1.51%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.143e-03	1.0000	315.0	2.64%	1104.8	3.02%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.062e-03	1.0000	400.0	3.35%	1381.0	3.78%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.985e-03	1.0000	302.0	2.53%	1062.0	2.91%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-5.982e-03	1.0000	20.0	0.17%	101.1	0.28%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-5.730e-03	1.0000	794.0	6.66%	2647.2	7.25%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-5.476e-03	1.0000	565.0	4.74%	1916.8	5.25%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-5.309e-03	1.0000	454.0	3.81%	1559.7	4.27%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-5.279e-03	1.0000	124.0	1.04%	472.2	1.29%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-5.259e-03	1.0000	764.0	6.41%	2554.5	6.99%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-4.841e-03	1.0000	611.0	5.12%	2067.5	5.66%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-4.837e-03	1.0000	126.0	1.06%	480.5	1.32%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-4.787e-03	1.0000	259.0	2.17%	925.1	2.53%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-4.599e-03	1.0000	330.0	2.77%	1159.9	3.18%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-4.539e-03	1.0000	646.0	5.42%	2181.5	5.97%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-4.394e-03	1.0000	189.0	1.58%	694.6	1.90%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-4.319e-03	1.0000	606.0	5.08%	2054.4	5.62%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-4.193e-03	1.0000	845.0	7.08%	2819.1	7.72%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.968e-03	1.0000	305.0	2.56%	1080.9	2.96%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-3.726e-03	1.0000	1133.0	9.50%	3737.3	10.23%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.718e-03	1.0000	257.0	2.15%	923.4	2.53%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-3.705e-03	1.0000	634.0	5.32%	2148.1	5.88%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-3.676e-03	1.0000	468.0	3.92%	1613.1	4.42%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-3.620e-03	1.0000	1793.0	15.03%	5816.7	15.92%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.176e-03	1.0000	426.0	3.57%	1480.2	4.05%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.969e-03	1.0000	456.0	3.82%	1579.9	4.33%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.799e-03	1.0000	260.0	2.18%	939.0	2.57%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.620e-03	1.0000	652.0	5.47%	2215.5	6.07%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-2.612e-03	1.0000	135.0	1.13%	519.3	1.42%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-2.341e-03	1.0000	1439.0	12.07%	4720.4	12.92%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-2.202e-03	1.0000	754.0	6.32%	2547.8	6.98%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.181e-03	1.0000	114.0	0.96%	450.0	1.23%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-2.122e-03	1.0000	393.0	3.30%	1381.6	3.78%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.007e-03	1.0000	360.0	3.02%	1274.8	3.49%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-1.750e-03	1.0000	872.0	7.31%	2931.1	8.02%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.743e-03	1.0000	601.0	5.04%	2061.8	5.64%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.455e-03	1.0000	1995.0	16.73%	6486.6	17.76%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-1.347e-03	1.0000	562.0	4.71%	1941.7	5.32%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-1.281e-03	1.0000	549.0	4.60%	1900.5	5.20%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.253e-03	1.0000	491.0	4.12%	1712.3	4.69%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.222e-03	1.0000	1341.0	11.24%	4433.3	12.14%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.217e-03	1.0000	594.0	4.98%	2048.0	5.61%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.171e-03	1.0000	2318.0	19.43%	7506.9	20.55%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.104e-03	1.0000	197.0	1.65%	743.0	2.03%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.031e-03	1.0000	266.0	2.23%	975.6	2.67%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-9.940e-04	1.0000	222.0	1.86%	828.5	2.27%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-8.820e-04	1.0000	3318.0	27.82%	10633.3	29.11%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-8.020e-04	1.0000	101.0	0.85%	415.6	1.14%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-7.090e-04	1.0000	2788.0	23.38%	8994.1	24.62%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-6.870e-04	1.0000	423.0	3.55%	1503.0	4.11%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-5.940e-04	1.0000	604.0	5.06%	2096.0	5.74%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-5.570e-04	1.0000	2157.0	18.09%	7031.3	19.25%
SeqBias: TA-repeat	TATATATATA	1e0	-4.530e-04	1.0000	2895.0	24.27%	9346.3	25.59%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.370e-04	1.0000	2426.0	20.34%	7883.8	21.58%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-4.300e-04	1.0000	668.0	5.60%	2311.8	6.33%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.110e-04	1.0000	200.0	1.68%	770.3	2.11%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-1.620e-04	1.0000	661.0	5.54%	2310.8	6.33%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-8.800e-05	1.0000	3014.0	25.27%	9781.9	26.78%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-8.400e-05	1.0000	1920.0	16.10%	6351.1	17.39%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-7.800e-05	1.0000	586.0	4.91%	2081.0	5.70%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.200e-05	1.0000	192.0	1.61%	768.4	2.10%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e0	-4.000e-05	1.0000	661.0	5.54%	2339.9	6.41%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-2.100e-05	1.0000	454.0	3.81%	1667.1	4.56%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.400e-05	1.0000	2501.0	20.97%	8239.6	22.56%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-1.200e-05	1.0000	434.0	3.64%	1609.6	4.41%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-7.000e-06	1.0000	515.0	4.32%	1889.2	5.17%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.000e-06	1.0000	747.0	6.26%	2667.4	7.30%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.000e-06	1.0000	1052.0	8.82%	3679.3	10.07%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-0.000e+00	1.0000	294.0	2.46%	1194.6	3.27%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-0.000e+00	1.0000	396.0	3.32%	1555.2	4.26%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-0.000e+00	1.0000	622.0	5.22%	2346.5	6.42%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	1228.0	10.30%	4394.5	12.03%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-0.000e+00	1.0000	158.0	1.32%	826.5	2.26%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	4.5	0.01%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.4	0.00%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%