Information for 4-CATGCATCDA (Motif 4)

A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
Reverse Opposite:
G C A T G A T C A T C G C G T A C A G T A T C G A T G C C G T A C G A T T C A G
p-value:1e-22
log p-value:-5.105e+01
Information Content per bp:1.598
Number of Target Sequences with motif3522.0
Percentage of Target Sequences with motif29.53%
Number of Background Sequences with motif9335.2
Percentage of Background Sequences with motif25.56%
Average Position of motif in Targets99.9 +/- 55.7bp
Average Position of motif in Background99.2 +/- 60.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

A2BP1(RRM)/Drosophila_melanogaster-RNCMPT00123-PBM/HughesRNA

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATCDA
GCATGCAN---
 A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
A C T G A G T C C G T A A C G T A C T G A G T C C G T A G A T C A C G T A C G T A C G T

FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CATGCATCDA--
NNMCATGCANAWNNH
 A C G T A C G T A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A A C G T A C G T
A G C T G A C T T G C A A G T C C G T A A C G T A C T G A G T C C G T A T C G A G T C A C G A T C A G T G T C A G C T A

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATCDA
YCATCMATCA-
 A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
G A T C G T A C C T G A A C G T G A T C G T C A C T G A A C G T G A T C G C T A A C G T

FUS3/MA0565.2/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CATGCATCDA
AAACATGCAT---
 A C G T A C G T A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
C G T A G C T A C G T A A G T C T C G A G A C T A T C G A G T C C G T A G C A T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CATGCATCDA
GYCATCMATCAT
 A C G T A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

FOX-1(RRM)/Caenorhabditis_elegans-RNCMPT00017-PBM/HughesRNA

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATCDA
TCATGCA----
 A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T

RBFOX1(RRM)/Homo_sapiens-RNCMPT00168-PBM/HughesRNA

Match Rank:7
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATCDA
GCATGCA----
 A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
A C T G A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATGCATCDA------
TCACCCATCAATAAACA
 A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

ASD-1(RRM)/Caenorhabditis_elegans-RNCMPT00180-PBM/HughesRNA

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CATGCATCDA
TCATGCA----
 A C G T A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
C A G T A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T

unc-86/MA0926.1/Jaspar

Match Rank:10
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CATGCATCDA
-ATGCATAT-
 A G T C C G T A G C A T T A C G T A G C G T C A C G A T T A G C C T A G C G T A
A C G T C G T A A C G T A C T G G T A C G T C A A C G T C G T A G A C T A C G T