Information for 17-CTTATTGAGT (Motif 30)

A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A G T C C G T A C G T A A C G T C G T A C G T A A C T G
p-value:1e-7
log p-value:-1.620e+01
Information Content per bp:1.530
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets108.9 +/- 56.1bp
Average Position of motif in Background126.7 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tv_0226(RRM)/Trichomonas_vaginalis-RNCMPT00226-PBM/HughesRNA

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CTTATTGAGT
NTTATTGN--
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T
G T A C A C G T A C G T C G T A A C G T A C G T C T A G A C G T A C G T A C G T

ONECUT1/MA0679.2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTTATTGAGT----
NNTTTATTGATTTTTT
 A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G A T C G A T G A C T C T G A G C A T G A C T C A T G C G T A G A C T G A C T C G A T G C A T G C A T G C A T

NKX2-5/MA0063.2/Jaspar

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTTATTGAGT---
--NNTTGAGTGNN
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

PB0197.1_Zfp105_2/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----CTTATTGAGT---
NAAANTTATTGAANCAN
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTTATTGAGT
--TATTGAYY
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T
A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

z/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CTTATTGAGT-
----TTGAGTG
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T A C T G C G T A A C T G G A C T A C T G

NKX2-2/MA1645.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTTATTGAGT-----
-NNNTTGAGTGGNNN
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

ceh-48/MA0921.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTATTGAGT
-NTATCGATN
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T
A C G T C G A T C G A T C G T A C G A T G A T C C A T G C T G A G C A T G A C T

ONECUT3/MA0757.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTATTGAGT----
NTTATTGATTTTTT
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

z/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CTTATTGAGT----
----TTGAGTGATT
 A G T C A C G T A C G T C G T A A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C T A G C G T A C T A G G A C T A T C G T C G A C A G T G C A T