Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 11929)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 36538)	% of Background Sequences with Motif
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-30	-7.024e+01	0.0000	1744.0	14.62%	4074.0	11.15%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-29	-6.873e+01	0.0000	1240.0	10.40%	2737.7	7.49%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-16	-3.746e+01	0.0000	804.0	6.74%	1827.9	5.00%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-14	-3.407e+01	0.0000	4761.0	39.92%	13310.4	36.42%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-14	-3.333e+01	0.0000	4298.0	36.04%	11936.4	32.66%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-12	-2.771e+01	0.0000	5487.0	46.00%	15642.4	42.80%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-11	-2.592e+01	0.0000	477.0	4.00%	1058.8	2.90%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-10	-2.527e+01	0.0000	3309.0	27.74%	9156.5	25.05%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-10	-2.331e+01	0.0000	1960.0	16.43%	5239.3	14.34%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-9	-2.167e+01	0.0000	1259.0	10.56%	3255.9	8.91%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-9	-2.135e+01	0.0000	859.0	7.20%	2136.6	5.85%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-9	-2.121e+01	0.0000	1830.0	15.34%	4900.4	13.41%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-8	-2.034e+01	0.0000	1409.0	11.81%	3703.9	10.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-8	-1.886e+01	0.0000	2056.0	17.24%	5602.0	15.33%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-7	-1.612e+01	0.0000	1610.0	13.50%	4358.5	11.93%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-6	-1.516e+01	0.0000	2019.0	16.93%	5573.1	15.25%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-6	-1.472e+01	0.0000	3272.0	27.43%	9300.1	25.45%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-6	-1.413e+01	0.0000	1289.0	10.81%	3467.7	9.49%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-6	-1.386e+01	0.0001	1513.0	12.69%	4122.1	11.28%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-5	-1.363e+01	0.0001	1363.0	11.43%	3691.7	10.10%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-5	-1.286e+01	0.0001	2330.0	19.54%	6547.7	17.92%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-5	-1.283e+01	0.0001	3868.0	32.43%	11146.4	30.50%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-5	-1.223e+01	0.0002	2566.0	21.51%	7265.7	19.88%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-4	-1.145e+01	0.0004	533.0	4.47%	1355.9	3.71%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-4	-1.123e+01	0.0005	802.0	6.72%	2120.7	5.80%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-4	-1.120e+01	0.0005	3288.0	27.57%	9455.0	25.87%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-4	-1.119e+01	0.0005	1303.0	10.92%	3568.3	9.76%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-4	-1.103e+01	0.0006	2013.0	16.88%	5658.3	15.48%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-4	-1.044e+01	0.0010	3496.0	29.31%	10106.5	27.65%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-4	-1.010e+01	0.0014	2588.0	21.70%	7395.4	20.24%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-4	-1.008e+01	0.0014	132.0	1.11%	281.0	0.77%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-4	-1.001e+01	0.0014	1227.0	10.29%	3373.5	9.23%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-4	-9.856e+00	0.0016	1990.0	16.68%	5623.1	15.39%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e-4	-9.756e+00	0.0017	1318.0	11.05%	3645.8	9.98%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-4	-9.753e+00	0.0017	823.0	6.90%	2207.0	6.04%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-3	-9.056e+00	0.0033	2855.0	23.94%	8230.0	22.52%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-3	-8.959e+00	0.0035	275.0	2.31%	671.7	1.84%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-3	-8.866e+00	0.0037	2049.0	17.18%	5828.7	15.95%
SeqBias: C/A-bias	MMMMMMMMMM	1e-3	-8.844e+00	0.0037	11901.0	99.78%	36394.1	99.58%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-3	-8.834e+00	0.0037	971.0	8.14%	2654.1	7.26%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-3	-8.678e+00	0.0042	1131.0	9.48%	3124.6	8.55%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-3	-8.457e+00	0.0051	4232.0	35.48%	12406.9	33.95%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-3	-8.372e+00	0.0054	1208.0	10.13%	3357.4	9.19%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-3	-8.366e+00	0.0054	2698.0	22.62%	7783.6	21.30%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-3	-8.318e+00	0.0055	2071.0	17.36%	5911.3	16.17%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-3	-8.302e+00	0.0055	1106.0	9.27%	3060.1	8.37%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-3	-8.067e+00	0.0067	3286.0	27.55%	9562.8	26.17%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-3	-8.016e+00	0.0069	1226.0	10.28%	3419.5	9.36%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-7.940e+00	0.0073	1915.0	16.06%	5459.2	14.94%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-3	-7.914e+00	0.0074	787.0	6.60%	2140.0	5.86%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-3	-7.830e+00	0.0078	1697.0	14.23%	4815.6	13.18%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-3	-7.711e+00	0.0087	3979.0	33.36%	11671.8	31.94%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-3	-7.646e+00	0.0091	2041.0	17.11%	5844.6	15.99%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-7.385e+00	0.0116	2179.0	18.27%	6265.2	17.14%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-3	-7.105e+00	0.0150	1411.0	11.83%	3991.0	10.92%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-3	-7.085e+00	0.0150	907.0	7.60%	2508.1	6.86%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-7.049e+00	0.0153	4342.0	36.40%	12802.2	35.03%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-2	-6.898e+00	0.0175	1777.0	14.90%	5083.7	13.91%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-2	-6.896e+00	0.0175	2638.0	22.12%	7659.1	20.96%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-6.826e+00	0.0182	663.0	5.56%	1804.1	4.94%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-2	-6.800e+00	0.0184	807.0	6.77%	2223.2	6.08%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-2	-6.669e+00	0.0206	2753.0	23.08%	8014.0	21.93%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-2	-6.590e+00	0.0219	1670.0	14.00%	4775.2	13.07%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-2	-6.425e+00	0.0255	2592.0	21.73%	7540.3	20.63%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.354e+00	0.0269	5353.0	44.88%	15916.4	43.55%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-6.198e+00	0.0310	357.0	2.99%	937.7	2.57%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-2	-6.142e+00	0.0323	834.0	6.99%	2318.4	6.34%
SeqBias: CA-repeat	CACACACACA	1e-2	-5.992e+00	0.0370	5261.0	44.11%	15654.4	42.83%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-2	-5.987e+00	0.0370	1989.0	16.68%	5749.0	15.73%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-5.926e+00	0.0384	734.0	6.15%	2031.8	5.56%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-2	-5.890e+00	0.0392	2847.0	23.87%	8331.2	22.80%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-5.735e+00	0.0451	891.0	7.47%	2496.1	6.83%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-2	-5.722e+00	0.0451	615.0	5.16%	1689.0	4.62%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-2	-5.700e+00	0.0455	2089.0	17.51%	6060.1	16.58%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-2	-5.688e+00	0.0455	1361.0	11.41%	3887.1	10.64%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-2	-5.673e+00	0.0455	3284.0	27.53%	9661.9	26.44%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.649e+00	0.0460	1893.0	15.87%	5475.4	14.98%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-2	-5.639e+00	0.0460	3214.0	26.95%	9451.9	25.86%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-2	-5.629e+00	0.0460	700.0	5.87%	1939.2	5.31%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-2	-5.507e+00	0.0510	1664.0	13.95%	4796.9	13.12%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-2	-5.506e+00	0.0510	362.0	3.04%	963.5	2.64%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-2	-5.500e+00	0.0510	2567.0	21.52%	7505.5	20.54%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-2	-5.486e+00	0.0510	2508.0	21.03%	7328.8	20.05%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-2	-5.477e+00	0.0510	2464.0	20.66%	7196.1	19.69%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e-2	-5.440e+00	0.0513	670.0	5.62%	1856.7	5.08%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-2	-5.373e+00	0.0543	894.0	7.50%	2515.0	6.88%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-2	-5.318e+00	0.0567	645.0	5.41%	1786.4	4.89%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-2	-5.229e+00	0.0613	3118.0	26.14%	9181.5	25.12%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-5.212e+00	0.0616	58.0	0.49%	124.2	0.34%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-2	-5.201e+00	0.0616	440.0	3.69%	1193.3	3.27%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-5.100e+00	0.0674	5566.0	46.67%	16636.8	45.52%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.081e+00	0.0679	1250.0	10.48%	3578.2	9.79%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-5.076e+00	0.0679	1433.0	12.01%	4123.9	11.28%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.062e+00	0.0679	242.0	2.03%	629.8	1.72%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.061e+00	0.0679	1599.0	13.41%	4619.2	12.64%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-5.026e+00	0.0688	1550.0	13.00%	4474.8	12.24%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-2	-4.997e+00	0.0701	2595.0	21.76%	7613.6	20.83%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-2	-4.984e+00	0.0703	2313.0	19.39%	6764.3	18.51%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-2	-4.979e+00	0.0703	1620.0	13.58%	4685.9	12.82%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-2	-4.938e+00	0.0721	2393.0	20.06%	7007.2	19.17%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-4.859e+00	0.0773	898.0	7.53%	2542.5	6.96%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-2	-4.827e+00	0.0790	1459.0	12.23%	4210.0	11.52%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-4.826e+00	0.0790	113.0	0.95%	273.6	0.75%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-2	-4.807e+00	0.0790	1382.0	11.59%	3981.6	10.89%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e-2	-4.802e+00	0.0790	792.0	6.64%	2231.2	6.11%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-4.743e+00	0.0827	1252.0	10.50%	3596.1	9.84%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-2	-4.735e+00	0.0827	1846.0	15.48%	5372.5	14.70%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-2	-4.731e+00	0.0827	3051.0	25.58%	9004.0	24.64%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-2	-4.660e+00	0.0873	2067.0	17.33%	6039.1	16.52%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-4.637e+00	0.0886	998.0	8.37%	2845.2	7.79%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-1	-4.598e+00	0.0913	1867.0	15.65%	5441.7	14.89%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-4.568e+00	0.0933	23.0	0.19%	41.5	0.11%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-4.463e+00	0.1027	936.0	7.85%	2667.5	7.30%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-4.404e+00	0.1079	551.0	4.62%	1534.7	4.20%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-4.397e+00	0.1079	913.0	7.65%	2601.0	7.12%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-1	-4.387e+00	0.1079	557.0	4.67%	1552.3	4.25%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-1	-4.348e+00	0.1112	479.0	4.02%	1326.0	3.63%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-1	-4.328e+00	0.1125	4907.0	41.14%	14670.6	40.14%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-4.287e+00	0.1162	3424.0	28.71%	10159.9	27.80%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e-1	-4.282e+00	0.1162	133.0	1.12%	334.5	0.92%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-1	-4.277e+00	0.1162	2227.0	18.67%	6539.6	17.89%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.276e+00	0.1162	667.0	5.59%	1878.6	5.14%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-1	-4.240e+00	0.1178	982.0	8.23%	2811.0	7.69%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-1	-4.216e+00	0.1197	200.0	1.68%	523.8	1.43%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-4.151e+00	0.1267	1023.0	8.58%	2936.5	8.03%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-1	-4.084e+00	0.1344	2769.0	23.22%	8186.9	22.40%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.987e+00	0.1469	1118.0	9.37%	3225.1	8.82%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-3.970e+00	0.1484	966.0	8.10%	2773.1	7.59%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-1	-3.961e+00	0.1485	978.0	8.20%	2809.1	7.69%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-1	-3.958e+00	0.1485	1072.0	8.99%	3089.7	8.45%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.940e+00	0.1493	1169.0	9.80%	3379.4	9.25%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-3.871e+00	0.1587	365.0	3.06%	1004.7	2.75%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e-1	-3.867e+00	0.1587	1161.0	9.73%	3358.8	9.19%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-3.844e+00	0.1607	2504.0	20.99%	7398.3	20.24%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-1	-3.839e+00	0.1607	1629.0	13.66%	4761.6	13.03%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-1	-3.831e+00	0.1607	968.0	8.12%	2784.0	7.62%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-1	-3.807e+00	0.1632	567.0	4.75%	1597.9	4.37%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-1	-3.801e+00	0.1632	2487.0	20.85%	7349.5	20.11%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-1	-3.791e+00	0.1634	1483.0	12.43%	4325.8	11.84%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-3.704e+00	0.1770	223.0	1.87%	597.6	1.64%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.703e+00	0.1770	1463.0	12.27%	4269.8	11.68%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-1	-3.661e+00	0.1822	1380.0	11.57%	4022.1	11.01%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-1	-3.627e+00	0.1870	2222.0	18.63%	6558.5	17.95%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-1	-3.570e+00	0.1967	605.0	5.07%	1716.7	4.70%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-1	-3.535e+00	0.2023	186.0	1.56%	494.2	1.35%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-1	-3.511e+00	0.2057	2648.0	22.20%	7853.1	21.49%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.511e+00	0.2057	37.0	0.31%	81.6	0.22%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-1	-3.462e+00	0.2131	2003.0	16.79%	5906.7	16.16%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.457e+00	0.2131	2707.0	22.70%	8035.6	21.99%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-1	-3.455e+00	0.2131	2038.0	17.09%	6012.5	16.45%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-3.450e+00	0.2131	1198.0	10.04%	3486.5	9.54%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-1	-3.434e+00	0.2135	1551.0	13.00%	4546.1	12.44%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-3.416e+00	0.2159	737.0	6.18%	2112.3	5.78%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-3.382e+00	0.2219	7303.0	61.23%	22078.8	60.41%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.359e+00	0.2257	704.0	5.90%	2016.7	5.52%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-1	-3.338e+00	0.2289	563.0	4.72%	1599.7	4.38%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-3.333e+00	0.2289	1359.0	11.39%	3975.0	10.88%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.326e+00	0.2289	528.0	4.43%	1496.4	4.09%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-3.295e+00	0.2345	387.0	3.24%	1082.8	2.96%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-3.285e+00	0.2354	1776.0	14.89%	5232.0	14.32%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-3.263e+00	0.2392	330.0	2.77%	916.8	2.51%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-1	-3.244e+00	0.2423	1492.0	12.51%	4378.2	11.98%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-1	-3.213e+00	0.2484	1783.0	14.95%	5256.8	14.38%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-3.209e+00	0.2484	540.0	4.53%	1535.0	4.20%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-3.196e+00	0.2495	1037.0	8.69%	3015.1	8.25%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-1	-3.170e+00	0.2545	1054.0	8.84%	3067.1	8.39%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-3.162e+00	0.2551	833.0	6.98%	2407.1	6.59%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.158e+00	0.2551	704.0	5.90%	2023.5	5.54%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-1	-3.152e+00	0.2551	585.0	4.90%	1670.4	4.57%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-1	-3.146e+00	0.2551	721.0	6.05%	2074.2	5.68%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-3.131e+00	0.2570	667.0	5.59%	1914.2	5.24%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.122e+00	0.2577	179.0	1.50%	481.6	1.32%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-1	-3.109e+00	0.2595	234.0	1.96%	640.1	1.75%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-1	-3.105e+00	0.2595	5333.0	44.71%	16058.5	43.94%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e-1	-3.074e+00	0.2658	400.0	3.35%	1126.9	3.08%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-1	-3.057e+00	0.2688	652.0	5.47%	1872.7	5.12%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.053e+00	0.2688	2356.0	19.75%	6997.7	19.15%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.044e+00	0.2693	113.0	0.95%	294.5	0.81%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-3.038e+00	0.2693	2592.0	21.73%	7713.1	21.10%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.022e+00	0.2723	222.0	1.86%	607.3	1.66%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-3.007e+00	0.2748	499.0	4.18%	1420.6	3.89%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-2.998e+00	0.2758	1438.0	12.06%	4228.7	11.57%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.997e+00	0.2758	1526.0	12.79%	4493.3	12.29%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-1	-2.990e+00	0.2758	1244.0	10.43%	3645.7	9.98%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-2.940e+00	0.2874	2727.0	22.86%	8129.8	22.24%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-2.939e+00	0.2874	1656.0	13.88%	4888.4	13.38%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-2.934e+00	0.2874	593.0	4.97%	1701.1	4.65%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-2.904e+00	0.2932	1716.0	14.39%	5071.0	13.88%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-1	-2.893e+00	0.2948	420.0	3.52%	1190.9	3.26%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-1	-2.869e+00	0.3007	1249.0	10.47%	3666.7	10.03%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.860e+00	0.3018	78.0	0.65%	198.7	0.54%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-1	-2.817e+00	0.3132	1476.0	12.38%	4352.9	11.91%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-1	-2.807e+00	0.3146	168.0	1.41%	455.9	1.25%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-1	-2.803e+00	0.3146	1417.0	11.88%	4175.4	11.42%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.791e+00	0.3166	681.0	5.71%	1968.0	5.38%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-1	-2.775e+00	0.3200	333.0	2.79%	937.4	2.56%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.768e+00	0.3206	392.0	3.29%	1111.1	3.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.738e+00	0.3271	103.0	0.86%	270.6	0.74%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.738e+00	0.3271	103.0	0.86%	270.6	0.74%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.731e+00	0.3279	39.0	0.33%	92.0	0.25%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e-1	-2.728e+00	0.3279	30.0	0.25%	68.0	0.19%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-2.709e+00	0.3317	43.0	0.36%	103.4	0.28%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-1	-2.703e+00	0.3320	1459.0	12.23%	4307.2	11.79%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-1	-2.678e+00	0.3388	1998.0	16.75%	5937.2	16.25%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-1	-2.652e+00	0.3460	801.0	6.72%	2332.7	6.38%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-2.639e+00	0.3488	127.0	1.06%	340.2	0.93%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.625e+00	0.3519	7.0	0.06%	11.0	0.03%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-1	-2.620e+00	0.3522	1351.0	11.33%	3986.8	10.91%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e-1	-2.610e+00	0.3539	529.0	4.44%	1522.9	4.17%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-1	-2.609e+00	0.3539	5464.0	45.81%	16500.6	45.15%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-1	-2.600e+00	0.3541	2202.0	18.46%	6560.8	17.95%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-1	-2.590e+00	0.3558	605.0	5.07%	1749.1	4.79%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-2.574e+00	0.3599	1650.0	13.83%	4891.5	13.38%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-2.558e+00	0.3642	1012.0	8.48%	2969.9	8.13%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-1	-2.552e+00	0.3647	1882.0	15.78%	5594.6	15.31%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-1	-2.546e+00	0.3651	734.0	6.15%	2136.6	5.85%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.541e+00	0.3651	285.0	2.39%	802.0	2.19%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.533e+00	0.3665	1911.0	16.02%	5683.9	15.55%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.531e+00	0.3665	895.0	7.50%	2619.9	7.17%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-2.514e+00	0.3701	504.0	4.23%	1452.0	3.97%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.497e+00	0.3747	1019.0	8.54%	2993.8	8.19%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e-1	-2.490e+00	0.3757	1103.0	9.25%	3246.1	8.88%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.487e+00	0.3757	377.0	3.16%	1075.3	2.94%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-1	-2.480e+00	0.3761	1617.0	13.56%	4797.3	13.13%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-2.463e+00	0.3808	48.0	0.40%	119.6	0.33%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-1	-2.460e+00	0.3808	461.0	3.87%	1325.0	3.63%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-2.456e+00	0.3808	240.0	2.01%	672.5	1.84%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.454e+00	0.3808	716.0	6.00%	2086.5	5.71%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.393e+00	0.4011	120.0	1.01%	324.7	0.89%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-1	-2.380e+00	0.4047	2339.0	19.61%	6991.2	19.13%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-2.377e+00	0.4047	335.0	2.81%	954.3	2.61%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-1	-2.364e+00	0.4077	93.0	0.78%	247.1	0.68%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-2.359e+00	0.4083	533.0	4.47%	1543.4	4.22%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.344e+00	0.4124	568.0	4.76%	1648.5	4.51%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-2.343e+00	0.4124	914.0	7.66%	2685.8	7.35%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-1	-2.336e+00	0.4124	209.0	1.75%	585.0	1.60%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.318e+00	0.4180	152.0	1.27%	418.1	1.14%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.317e+00	0.4180	106.0	0.89%	285.9	0.78%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-1	-2.313e+00	0.4180	176.0	1.48%	488.3	1.34%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.304e+00	0.4187	38.0	0.32%	93.5	0.26%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.286e+00	0.4243	1300.0	10.90%	3851.7	10.54%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-2.281e+00	0.4247	1101.0	9.23%	3251.1	8.90%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-2.281e+00	0.4247	391.0	3.28%	1123.7	3.07%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.276e+00	0.4247	288.0	2.41%	818.7	2.24%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.273e+00	0.4247	250.0	2.10%	706.2	1.93%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.228e+00	0.4405	467.0	3.92%	1351.8	3.70%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-2.220e+00	0.4424	1874.0	15.71%	5592.9	15.30%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.214e+00	0.4434	972.0	8.15%	2866.9	7.84%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.207e+00	0.4446	210.0	1.76%	590.8	1.62%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.204e+00	0.4446	1933.0	16.21%	5772.8	15.80%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-2.198e+00	0.4450	890.0	7.46%	2620.3	7.17%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-2.189e+00	0.4470	1264.0	10.60%	3748.5	10.26%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-2.188e+00	0.4470	438.0	3.67%	1266.4	3.47%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-2.172e+00	0.4512	31.0	0.26%	75.6	0.21%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.163e+00	0.4534	248.0	2.08%	703.4	1.92%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-2.156e+00	0.4552	1214.0	10.18%	3599.7	9.85%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-2.137e+00	0.4619	723.0	6.06%	2121.4	5.80%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-2.129e+00	0.4636	936.0	7.85%	2763.0	7.56%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.118e+00	0.4673	141.0	1.18%	390.2	1.07%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.112e+00	0.4681	943.0	7.91%	2784.3	7.62%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-2.109e+00	0.4681	1438.0	12.06%	4279.9	11.71%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-2.107e+00	0.4681	1354.0	11.35%	4025.1	11.01%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-2.107e+00	0.4681	1717.0	14.40%	5124.3	14.02%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-2.090e+00	0.4714	2257.0	18.92%	6764.8	18.51%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.089e+00	0.4714	996.0	8.35%	2945.7	8.06%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-2.081e+00	0.4722	54.0	0.45%	140.8	0.39%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.078e+00	0.4722	437.0	3.66%	1267.5	3.47%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-2.075e+00	0.4722	117.0	0.98%	321.3	0.88%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-2.073e+00	0.4722	450.0	3.77%	1306.5	3.57%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.072e+00	0.4722	49.0	0.41%	126.3	0.35%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-2.072e+00	0.4722	1734.0	14.54%	5178.7	14.17%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.071e+00	0.4722	698.0	5.85%	2049.3	5.61%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-2.063e+00	0.4722	362.0	3.04%	1044.9	2.86%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.030e+00	0.4821	2134.0	17.89%	6395.9	17.50%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-2.028e+00	0.4821	11385.0	95.46%	34805.7	95.23%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.026e+00	0.4821	1756.0	14.72%	5248.0	14.36%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-2.020e+00	0.4821	451.0	3.78%	1311.4	3.59%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.008e+00	0.4859	90.0	0.75%	244.7	0.67%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.006e+00	0.4859	517.0	4.33%	1509.9	4.13%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.994e+00	0.4894	297.0	2.49%	853.0	2.33%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.986e+00	0.4914	1435.0	12.03%	4278.4	11.71%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-1.982e+00	0.4914	510.0	4.28%	1489.3	4.07%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.978e+00	0.4918	1771.0	14.85%	5298.0	14.50%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.963e+00	0.4976	11019.0	92.39%	33666.0	92.12%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.963e+00	0.4976	57.0	0.48%	150.5	0.41%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.961e+00	0.4976	176.0	1.48%	496.3	1.36%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.954e+00	0.4976	3164.0	26.53%	9536.5	26.09%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.953e+00	0.4976	1200.0	10.06%	3569.3	9.77%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.947e+00	0.4976	1000.0	8.38%	2965.7	8.11%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.946e+00	0.4976	1730.0	14.50%	5175.2	14.16%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.939e+00	0.4976	471.0	3.95%	1374.3	3.76%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.934e+00	0.4979	333.0	2.79%	962.8	2.63%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.931e+00	0.4979	103.0	0.86%	283.7	0.78%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.910e+00	0.5069	879.0	7.37%	2602.6	7.12%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.907e+00	0.5069	1876.0	15.73%	5621.7	15.38%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.900e+00	0.5084	413.0	3.46%	1202.4	3.29%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.886e+00	0.5135	713.0	5.98%	2103.7	5.76%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.884e+00	0.5135	91.0	0.76%	249.2	0.68%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-1.876e+00	0.5157	1315.0	11.03%	3922.4	10.73%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.872e+00	0.5157	1410.0	11.82%	4210.7	11.52%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.869e+00	0.5157	1109.0	9.30%	3299.9	9.03%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-1.869e+00	0.5157	609.0	5.11%	1791.2	4.90%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-1.849e+00	0.5226	1138.0	9.54%	3388.3	9.27%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-1.848e+00	0.5226	962.0	8.07%	2856.4	7.82%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.838e+00	0.5248	89.0	0.75%	244.9	0.67%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-1.835e+00	0.5249	743.0	6.23%	2196.8	6.01%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-1.832e+00	0.5249	1571.0	13.17%	4701.8	12.86%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.830e+00	0.5249	63.0	0.53%	169.2	0.46%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.820e+00	0.5273	147.0	1.23%	414.4	1.13%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.817e+00	0.5273	526.0	4.41%	1544.9	4.23%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.805e+00	0.5319	66.0	0.55%	178.3	0.49%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.805e+00	0.5319	301.0	2.52%	871.9	2.39%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.799e+00	0.5319	3349.0	28.08%	10115.4	27.68%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.782e+00	0.5393	11881.0	99.61%	36383.4	99.55%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.773e+00	0.5424	985.0	8.26%	2930.3	8.02%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.768e+00	0.5433	629.0	5.27%	1856.7	5.08%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.761e+00	0.5452	2569.0	21.54%	7741.1	21.18%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.747e+00	0.5513	5.0	0.04%	9.6	0.03%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.737e+00	0.5552	1130.0	9.47%	3371.9	9.23%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.733e+00	0.5557	67.0	0.56%	182.6	0.50%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.729e+00	0.5560	820.0	6.88%	2434.4	6.66%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-1.687e+00	0.5780	934.0	7.83%	2781.0	7.61%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.681e+00	0.5797	604.0	5.06%	1785.4	4.89%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.680e+00	0.5797	600.0	5.03%	1774.0	4.85%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.677e+00	0.5797	20.0	0.17%	49.4	0.14%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.668e+00	0.5821	279.0	2.34%	810.9	2.22%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.666e+00	0.5821	163.0	1.37%	465.9	1.27%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.666e+00	0.5821	960.0	8.05%	2861.8	7.83%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.651e+00	0.5868	2388.0	20.02%	7200.3	19.70%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.649e+00	0.5868	1199.0	10.05%	3586.8	9.81%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.648e+00	0.5868	788.0	6.61%	2342.1	6.41%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.647e+00	0.5868	52.0	0.44%	140.8	0.39%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.644e+00	0.5868	214.0	1.79%	617.7	1.69%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.640e+00	0.5868	275.0	2.31%	799.4	2.19%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.631e+00	0.5876	835.0	7.00%	2485.3	6.80%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.629e+00	0.5876	949.0	7.96%	2830.9	7.75%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.629e+00	0.5876	910.0	7.63%	2712.6	7.42%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.628e+00	0.5876	983.0	8.24%	2933.0	8.03%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.627e+00	0.5876	980.0	8.22%	2924.9	8.00%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.624e+00	0.5876	369.0	3.09%	1081.1	2.96%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.618e+00	0.5876	509.0	4.27%	1502.2	4.11%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.616e+00	0.5876	955.0	8.01%	2849.5	7.80%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.599e+00	0.5927	364.0	3.05%	1067.1	2.92%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.576e+00	0.6046	394.0	3.30%	1158.5	3.17%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.576e+00	0.6046	311.0	2.61%	910.0	2.49%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.575e+00	0.6046	967.0	8.11%	2888.0	7.90%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.550e+00	0.6151	1139.0	9.55%	3411.6	9.33%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.550e+00	0.6151	493.0	4.13%	1457.3	3.99%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.544e+00	0.6153	825.0	6.92%	2460.7	6.73%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.540e+00	0.6160	1263.0	10.59%	3788.3	10.37%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.538e+00	0.6160	2243.0	18.81%	6769.8	18.52%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.512e+00	0.6300	930.0	7.80%	2780.3	7.61%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.509e+00	0.6300	411.0	3.45%	1212.3	3.32%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.507e+00	0.6300	952.0	7.98%	2847.1	7.79%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.501e+00	0.6318	143.0	1.20%	411.0	1.12%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.500e+00	0.6318	2252.0	18.88%	6800.8	18.61%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.497e+00	0.6318	1849.0	15.50%	5573.1	15.25%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.476e+00	0.6420	572.0	4.80%	1699.1	4.65%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.467e+00	0.6462	1194.0	10.01%	3584.9	9.81%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.465e+00	0.6462	74.0	0.62%	207.4	0.57%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.445e+00	0.6567	301.0	2.52%	884.3	2.42%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.445e+00	0.6567	262.0	2.20%	767.1	2.10%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.438e+00	0.6578	2373.0	19.90%	7175.4	19.63%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-1.431e+00	0.6605	187.0	1.57%	543.7	1.49%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.428e+00	0.6606	352.0	2.95%	1038.8	2.84%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.425e+00	0.6608	1216.0	10.20%	3654.3	10.00%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.420e+00	0.6627	1736.0	14.56%	5236.5	14.33%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.415e+00	0.6640	974.0	8.17%	2920.1	7.99%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.401e+00	0.6716	1466.0	12.29%	4416.4	12.08%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.397e+00	0.6724	30.0	0.25%	80.2	0.22%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.394e+00	0.6726	394.0	3.30%	1166.9	3.19%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.390e+00	0.6738	1117.0	9.37%	3356.2	9.18%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-1.384e+00	0.6756	851.0	7.14%	2549.5	6.98%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.381e+00	0.6760	813.0	6.82%	2434.3	6.66%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.376e+00	0.6779	2119.0	17.77%	6407.4	17.53%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.363e+00	0.6843	254.0	2.13%	746.3	2.04%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.337e+00	0.7008	1241.0	10.40%	3737.3	10.23%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.332e+00	0.7023	338.0	2.83%	1000.9	2.74%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-1.331e+00	0.7023	3382.0	28.36%	10267.4	28.09%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e0	-1.331e+00	0.7023	1154.0	9.68%	3473.6	9.50%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.324e+00	0.7025	1013.0	8.49%	3045.1	8.33%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.324e+00	0.7025	1141.0	9.57%	3434.0	9.40%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.277e+00	0.7324	67.0	0.56%	190.8	0.52%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.274e+00	0.7329	360.0	3.02%	1069.2	2.93%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-1.267e+00	0.7359	708.0	5.94%	2123.6	5.81%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.261e+00	0.7388	1279.0	10.72%	3859.5	10.56%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.258e+00	0.7389	77.0	0.65%	220.5	0.60%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.255e+00	0.7389	412.0	3.45%	1227.7	3.36%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.250e+00	0.7409	997.0	8.36%	3002.9	8.22%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.246e+00	0.7417	159.0	1.33%	466.0	1.27%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.243e+00	0.7424	1803.0	15.12%	5457.8	14.93%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.241e+00	0.7424	597.0	5.01%	1788.5	4.89%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-1.239e+00	0.7424	1372.0	11.50%	4144.8	11.34%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.237e+00	0.7424	1187.0	9.95%	3581.0	9.80%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.236e+00	0.7424	95.0	0.80%	274.0	0.75%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.229e+00	0.7433	957.0	8.02%	2882.3	7.89%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.225e+00	0.7446	1022.0	8.57%	3080.9	8.43%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.216e+00	0.7493	74.0	0.62%	212.2	0.58%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.212e+00	0.7506	260.0	2.18%	770.5	2.11%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.197e+00	0.7596	92.0	0.77%	266.3	0.73%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.186e+00	0.7666	351.0	2.94%	1046.4	2.86%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.179e+00	0.7700	448.0	3.76%	1340.5	3.67%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.175e+00	0.7709	28.0	0.23%	77.6	0.21%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.165e+00	0.7769	3.0	0.03%	6.0	0.02%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.150e+00	0.7866	118.0	0.99%	345.7	0.95%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.150e+00	0.7866	761.0	6.38%	2292.9	6.27%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.132e+00	0.7966	244.0	2.05%	725.3	1.98%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.122e+00	0.8027	879.0	7.37%	2653.8	7.26%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.110e+00	0.8107	641.0	5.37%	1930.1	5.28%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.105e+00	0.8124	49.0	0.41%	140.9	0.39%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.104e+00	0.8124	50.0	0.42%	143.9	0.39%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.096e+00	0.8158	1834.0	15.38%	5567.3	15.23%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.081e+00	0.8267	275.0	2.31%	821.3	2.25%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.076e+00	0.8287	1715.0	14.38%	5206.9	14.25%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.074e+00	0.8287	333.0	2.79%	997.5	2.73%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-1.074e+00	0.8287	4328.0	36.29%	13195.6	36.11%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.066e+00	0.8305	211.0	1.77%	628.7	1.72%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.055e+00	0.8378	136.0	1.14%	402.5	1.10%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-1.054e+00	0.8378	759.0	6.36%	2293.8	6.28%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.053e+00	0.8378	889.0	7.45%	2689.5	7.36%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.049e+00	0.8378	1331.0	11.16%	4037.6	11.05%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.048e+00	0.8378	54.0	0.45%	156.5	0.43%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-1.047e+00	0.8378	1842.0	15.44%	5598.0	15.32%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.042e+00	0.8378	282.0	2.36%	844.3	2.31%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.040e+00	0.8378	84.0	0.70%	246.3	0.67%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.040e+00	0.8378	2193.0	18.39%	6670.9	18.25%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.038e+00	0.8378	161.0	1.35%	478.0	1.31%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.036e+00	0.8378	5.0	0.04%	12.9	0.04%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-1.034e+00	0.8378	2518.0	21.11%	7664.1	20.97%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.031e+00	0.8378	296.0	2.48%	887.0	2.43%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.027e+00	0.8378	1071.0	8.98%	3246.7	8.88%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-1.020e+00	0.8401	1448.0	12.14%	4397.4	12.03%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.018e+00	0.8401	14.0	0.12%	38.4	0.11%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.006e+00	0.8475	2973.0	24.93%	9059.8	24.79%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.001e+00	0.8499	416.0	3.49%	1253.1	3.43%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-9.902e-01	0.8571	11901.0	99.78%	36460.7	99.76%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-9.886e-01	0.8571	1573.0	13.19%	4782.5	13.09%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-9.825e-01	0.8598	115.0	0.96%	341.2	0.93%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.806e-01	0.8598	2.0	0.02%	4.7	0.01%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-9.727e-01	0.8644	1577.0	13.22%	4796.7	13.12%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-9.704e-01	0.8644	685.0	5.74%	2074.4	5.68%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.699e-01	0.8644	141.0	1.18%	420.8	1.15%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.686e-01	0.8644	208.0	1.74%	623.9	1.71%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-9.658e-01	0.8644	172.0	1.44%	515.0	1.41%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.606e-01	0.8651	1048.0	8.79%	3182.2	8.71%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.577e-01	0.8656	946.0	7.93%	2871.3	7.86%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-9.419e-01	0.8775	781.0	6.55%	2369.9	6.48%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-9.332e-01	0.8831	2131.0	17.87%	6494.6	17.77%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-9.238e-01	0.8895	14.0	0.12%	40.0	0.11%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-9.236e-01	0.8895	1278.0	10.72%	3888.4	10.64%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-9.219e-01	0.8895	4635.0	38.86%	14159.4	38.74%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.209e-01	0.8895	178.0	1.49%	534.9	1.46%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-9.205e-01	0.8895	396.0	3.32%	1197.3	3.28%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.186e-01	0.8895	69.0	0.58%	204.2	0.56%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-9.163e-01	0.8895	1006.0	8.43%	3058.7	8.37%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-9.161e-01	0.8895	640.0	5.37%	1941.7	5.31%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-9.148e-01	0.8895	1022.0	8.57%	3107.4	8.50%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-9.143e-01	0.8895	17.0	0.14%	48.4	0.13%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-9.114e-01	0.8895	167.0	1.40%	501.6	1.37%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-9.078e-01	0.8895	1727.0	14.48%	5262.8	14.40%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.061e-01	0.8895	664.0	5.57%	2015.3	5.51%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-8.987e-01	0.8895	633.0	5.31%	1921.9	5.26%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-8.977e-01	0.8895	1688.0	14.15%	5144.4	14.08%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-8.888e-01	0.8915	2854.0	23.93%	8712.8	23.84%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.851e-01	0.8928	1644.0	13.78%	5011.9	13.71%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-8.835e-01	0.8928	11910.0	99.86%	36490.2	99.84%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-8.771e-01	0.8961	955.0	8.01%	2906.9	7.95%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-8.767e-01	0.8961	638.0	5.35%	1938.5	5.30%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-8.643e-01	0.9038	860.0	7.21%	2617.3	7.16%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-8.626e-01	0.9038	673.0	5.64%	2047.0	5.60%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-8.603e-01	0.9038	319.0	2.67%	966.6	2.64%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.532e-01	0.9080	78.0	0.65%	233.3	0.64%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-8.512e-01	0.9080	1052.0	8.82%	3205.6	8.77%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-8.425e-01	0.9140	123.0	1.03%	370.4	1.01%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-8.403e-01	0.9140	11.0	0.09%	31.6	0.09%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.368e-01	0.9153	18.0	0.15%	52.9	0.14%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-8.351e-01	0.9153	1317.0	11.04%	4017.8	10.99%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-8.351e-01	0.9153	576.0	4.83%	1752.6	4.80%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.334e-01	0.9153	683.0	5.73%	2079.1	5.69%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.328e-01	0.9153	89.0	0.75%	267.3	0.73%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-8.317e-01	0.9153	5035.0	42.22%	15400.2	42.14%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-8.275e-01	0.9153	2993.0	25.09%	9147.2	25.03%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-8.182e-01	0.9190	367.0	3.08%	1115.4	3.05%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.122e-01	0.9226	341.0	2.86%	1036.7	2.84%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-8.119e-01	0.9226	1674.0	14.04%	5112.2	13.99%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-8.090e-01	0.9226	1062.0	8.90%	3240.6	8.87%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-8.035e-01	0.9249	549.0	4.60%	1672.5	4.58%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-7.970e-01	0.9290	887.0	7.44%	2706.5	7.41%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.910e-01	0.9328	443.0	3.71%	1349.9	3.69%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.860e-01	0.9355	732.0	6.14%	2234.0	6.11%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.859e-01	0.9355	28.0	0.23%	83.2	0.23%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-7.859e-01	0.9355	749.0	6.28%	2285.0	6.25%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.779e-01	0.9374	50.0	0.42%	150.8	0.41%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-7.751e-01	0.9381	1266.0	10.61%	3868.9	10.59%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-7.735e-01	0.9381	150.0	1.26%	455.2	1.25%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.690e-01	0.9400	1418.0	11.89%	4334.9	11.86%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-7.664e-01	0.9406	5782.0	48.48%	17701.0	48.43%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.635e-01	0.9414	1374.0	11.52%	4200.2	11.49%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-7.596e-01	0.9432	741.0	6.21%	2263.0	6.19%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-7.489e-01	0.9514	1247.0	10.46%	3813.4	10.43%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-7.428e-01	0.9553	3165.0	26.54%	9688.0	26.51%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.426e-01	0.9553	1685.0	14.13%	5155.2	14.11%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-7.417e-01	0.9553	399.0	3.35%	1218.8	3.33%
SeqBias: CG bias	SSSSSSSSSS	1e0	-7.362e-01	0.9560	6934.0	58.14%	21237.0	58.11%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.350e-01	0.9560	103.0	0.86%	313.1	0.86%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-7.330e-01	0.9560	553.0	4.64%	1690.4	4.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.309e-01	0.9560	987.0	8.28%	3019.2	8.26%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-7.252e-01	0.9589	526.0	4.41%	1608.8	4.40%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.227e-01	0.9595	732.0	6.14%	2239.8	6.13%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-7.222e-01	0.9595	278.0	2.33%	849.2	2.32%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-7.179e-01	0.9603	290.0	2.43%	886.7	2.43%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-7.125e-01	0.9636	397.0	3.33%	1214.6	3.32%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-7.100e-01	0.9641	2728.0	22.87%	8355.7	22.86%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-7.070e-01	0.9651	215.0	1.80%	657.1	1.80%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.068e-01	0.9651	102.0	0.86%	311.9	0.85%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-7.039e-01	0.9651	3165.0	26.54%	9695.5	26.53%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-6.994e-01	0.9668	366.0	3.07%	1120.7	3.07%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-6.974e-01	0.9669	1350.0	11.32%	4135.9	11.32%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-6.917e-01	0.9706	31.0	0.26%	94.2	0.26%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.886e-01	0.9717	30.0	0.25%	92.0	0.25%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-6.855e-01	0.9729	3112.0	26.09%	9536.9	26.09%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.854e-01	0.9729	29.0	0.24%	88.9	0.24%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.803e-01	0.9742	1686.0	14.14%	5167.5	14.14%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-6.790e-01	0.9742	252.0	2.11%	773.0	2.11%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-6.753e-01	0.9753	1089.0	9.13%	3338.3	9.13%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.688e-01	0.9798	741.0	6.21%	2272.8	6.22%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-6.677e-01	0.9798	3401.0	28.52%	10425.8	28.53%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.659e-01	0.9798	65.0	0.54%	199.3	0.55%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.624e-01	0.9806	10.0	0.08%	30.1	0.08%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-6.594e-01	0.9816	205.0	1.72%	629.3	1.72%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-6.554e-01	0.9837	289.0	2.42%	887.9	2.43%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-6.471e-01	0.9901	44.0	0.37%	135.6	0.37%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.457e-01	0.9901	124.0	1.04%	381.6	1.04%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.402e-01	0.9931	246.0	2.06%	756.9	2.07%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-6.394e-01	0.9931	189.0	1.58%	581.9	1.59%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-6.382e-01	0.9931	1409.0	11.81%	4324.4	11.83%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-6.381e-01	0.9931	188.0	1.58%	578.3	1.58%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-6.379e-01	0.9931	401.0	3.36%	1232.6	3.37%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.363e-01	0.9931	428.0	3.59%	1315.7	3.60%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-6.360e-01	0.9931	646.0	5.42%	1984.7	5.43%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-6.254e-01	0.9949	732.0	6.14%	2249.8	6.16%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-6.248e-01	0.9949	1098.0	9.21%	3372.5	9.23%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.221e-01	0.9949	313.0	2.62%	963.2	2.64%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-6.213e-01	0.9949	368.0	3.09%	1132.5	3.10%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-6.201e-01	0.9949	148.0	1.24%	456.2	1.25%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.172e-01	0.9949	476.0	3.99%	1465.0	4.01%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.169e-01	0.9949	159.0	1.33%	490.1	1.34%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.159e-01	0.9949	293.0	2.46%	902.0	2.47%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.150e-01	0.9949	431.0	3.61%	1326.5	3.63%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-6.101e-01	0.9949	481.0	4.03%	1480.1	4.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.066e-01	0.9954	32.0	0.27%	99.0	0.27%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-6.063e-01	0.9954	831.0	6.97%	2555.0	6.99%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.014e-01	0.9969	99.0	0.83%	306.1	0.84%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.009e-01	0.9969	1402.0	11.75%	4308.5	11.79%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-5.965e-01	0.9982	158.0	1.32%	488.7	1.34%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.939e-01	0.9990	1416.0	11.87%	4353.0	11.91%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-5.894e-01	1.0000	565.0	4.74%	1740.8	4.76%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.872e-01	1.0000	1503.0	12.60%	4620.4	12.64%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-5.852e-01	1.0000	18.0	0.15%	56.5	0.15%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.840e-01	1.0000	1994.0	16.72%	6127.9	16.77%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.832e-01	1.0000	354.0	2.97%	1092.4	2.99%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.830e-01	1.0000	2228.0	18.68%	6845.1	18.73%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.829e-01	1.0000	708.0	5.94%	2180.8	5.97%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-5.813e-01	1.0000	1504.0	12.61%	4624.1	12.65%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-5.792e-01	1.0000	592.0	4.96%	1825.0	4.99%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-5.744e-01	1.0000	384.0	3.22%	1185.3	3.24%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-5.743e-01	1.0000	5667.0	47.51%	17391.0	47.58%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-5.740e-01	1.0000	2012.0	16.87%	6184.7	16.92%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.718e-01	1.0000	16.0	0.13%	50.0	0.14%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-5.711e-01	1.0000	540.0	4.53%	1665.7	4.56%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-5.660e-01	1.0000	847.0	7.10%	2610.0	7.14%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-5.636e-01	1.0000	103.0	0.86%	320.7	0.88%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-5.587e-01	1.0000	725.0	6.08%	2235.4	6.12%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-5.531e-01	1.0000	21.0	0.18%	67.0	0.18%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-5.508e-01	1.0000	422.0	3.54%	1304.5	3.57%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.504e-01	1.0000	1590.0	13.33%	4893.9	13.39%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-5.503e-01	1.0000	1733.0	14.53%	5333.0	14.59%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-5.498e-01	1.0000	270.0	2.26%	836.9	2.29%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-5.497e-01	1.0000	140.0	1.17%	435.1	1.19%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.448e-01	1.0000	54.0	0.45%	169.7	0.46%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-5.418e-01	1.0000	540.0	4.53%	1668.3	4.56%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-5.331e-01	1.0000	1394.0	11.69%	4294.1	11.75%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-5.313e-01	1.0000	140.0	1.17%	436.3	1.19%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-5.312e-01	1.0000	1856.0	15.56%	5713.7	15.63%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.284e-01	1.0000	49.0	0.41%	154.1	0.42%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.277e-01	1.0000	32.0	0.27%	101.8	0.28%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-5.253e-01	1.0000	169.0	1.42%	526.4	1.44%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-5.236e-01	1.0000	354.0	2.97%	1097.3	3.00%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-5.229e-01	1.0000	31.0	0.26%	98.9	0.27%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-5.193e-01	1.0000	1075.0	9.01%	3316.6	9.07%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.165e-01	1.0000	174.0	1.46%	542.3	1.48%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-5.152e-01	1.0000	1121.0	9.40%	3459.0	9.46%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-5.150e-01	1.0000	1298.0	10.88%	4002.0	10.95%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-5.132e-01	1.0000	1294.0	10.85%	3990.1	10.92%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.126e-01	1.0000	109.0	0.91%	342.0	0.94%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-5.117e-01	1.0000	2606.0	21.85%	8019.5	21.94%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.106e-01	1.0000	108.0	0.91%	338.6	0.93%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-5.096e-01	1.0000	15.0	0.13%	48.7	0.13%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-5.019e-01	1.0000	895.0	7.50%	2765.6	7.57%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-5.007e-01	1.0000	401.0	3.36%	1244.3	3.40%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-4.990e-01	1.0000	3457.0	28.98%	10633.2	29.09%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-4.945e-01	1.0000	245.0	2.05%	763.5	2.09%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-4.932e-01	1.0000	1076.0	9.02%	3323.3	9.09%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-4.919e-01	1.0000	189.0	1.58%	590.5	1.62%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-4.910e-01	1.0000	927.0	7.77%	2865.5	7.84%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.908e-01	1.0000	583.0	4.89%	1806.7	4.94%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-4.903e-01	1.0000	4.0	0.03%	13.3	0.04%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.863e-01	1.0000	271.0	2.27%	844.6	2.31%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.849e-01	1.0000	864.0	7.24%	2672.5	7.31%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-4.823e-01	1.0000	620.0	5.20%	1921.0	5.26%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.781e-01	1.0000	565.0	4.74%	1752.7	4.80%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-4.781e-01	1.0000	626.0	5.25%	1940.9	5.31%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-4.777e-01	1.0000	169.0	1.42%	529.6	1.45%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-4.771e-01	1.0000	17.0	0.14%	55.9	0.15%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.739e-01	1.0000	100.0	0.84%	315.1	0.86%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-4.721e-01	1.0000	666.0	5.58%	2064.5	5.65%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-4.701e-01	1.0000	1358.0	11.39%	4194.9	11.48%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-4.636e-01	1.0000	405.0	3.40%	1260.4	3.45%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-4.629e-01	1.0000	199.0	1.67%	624.0	1.71%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.616e-01	1.0000	54.0	0.45%	172.3	0.47%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.587e-01	1.0000	138.0	1.16%	434.9	1.19%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-4.580e-01	1.0000	632.0	5.30%	1961.6	5.37%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.574e-01	1.0000	288.0	2.41%	899.7	2.46%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-4.569e-01	1.0000	3.0	0.03%	10.8	0.03%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-4.556e-01	1.0000	10.0	0.08%	33.8	0.09%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-4.546e-01	1.0000	897.0	7.52%	2778.7	7.60%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.543e-01	1.0000	6.0	0.05%	20.9	0.06%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-4.528e-01	1.0000	819.0	6.87%	2538.1	6.94%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-4.524e-01	1.0000	1920.0	16.10%	5925.1	16.21%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.511e-01	1.0000	44.0	0.37%	141.7	0.39%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-4.509e-01	1.0000	978.0	8.20%	3029.0	8.29%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.499e-01	1.0000	37.0	0.31%	119.3	0.33%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-4.499e-01	1.0000	37.0	0.31%	119.3	0.33%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-4.497e-01	1.0000	963.0	8.07%	2982.8	8.16%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-4.418e-01	1.0000	184.0	1.54%	578.1	1.58%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.409e-01	1.0000	18.0	0.15%	59.7	0.16%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-4.406e-01	1.0000	594.0	4.98%	1846.2	5.05%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.387e-01	1.0000	13.0	0.11%	43.9	0.12%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-4.385e-01	1.0000	77.0	0.65%	245.2	0.67%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.380e-01	1.0000	1257.0	10.54%	3889.9	10.64%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-4.369e-01	1.0000	162.0	1.36%	510.5	1.40%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-4.358e-01	1.0000	47.0	0.39%	151.1	0.41%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-4.341e-01	1.0000	1640.0	13.75%	5068.3	13.87%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-4.318e-01	1.0000	581.0	4.87%	1807.9	4.95%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.311e-01	1.0000	379.0	3.18%	1183.2	3.24%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.275e-01	1.0000	883.0	7.40%	2739.5	7.50%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-4.228e-01	1.0000	26.0	0.22%	85.3	0.23%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.190e-01	1.0000	56.0	0.47%	180.5	0.49%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-4.183e-01	1.0000	758.0	6.36%	2355.4	6.44%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-4.106e-01	1.0000	698.0	5.85%	2171.6	5.94%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.092e-01	1.0000	2197.0	18.42%	6786.6	18.57%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.031e-01	1.0000	117.0	0.98%	372.2	1.02%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-4.021e-01	1.0000	28.0	0.23%	93.0	0.25%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-4.009e-01	1.0000	1525.0	12.79%	4721.4	12.92%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.969e-01	1.0000	38.0	0.32%	124.3	0.34%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.969e-01	1.0000	38.0	0.32%	124.3	0.34%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.945e-01	1.0000	32.0	0.27%	105.3	0.29%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.935e-01	1.0000	196.0	1.64%	619.8	1.70%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-3.921e-01	1.0000	195.0	1.63%	616.8	1.69%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.919e-01	1.0000	89.0	0.75%	285.5	0.78%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.914e-01	1.0000	13.0	0.11%	44.4	0.12%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.914e-01	1.0000	13.0	0.11%	44.2	0.12%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-3.839e-01	1.0000	929.0	7.79%	2888.9	7.90%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.772e-01	1.0000	654.0	5.48%	2040.1	5.58%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-3.730e-01	1.0000	2292.0	19.22%	7087.1	19.39%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-3.685e-01	1.0000	450.0	3.77%	1410.5	3.86%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-3.631e-01	1.0000	3.0	0.03%	11.8	0.03%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.591e-01	1.0000	52.0	0.44%	170.1	0.47%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-3.578e-01	1.0000	831.0	6.97%	2590.2	7.09%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.520e-01	1.0000	592.0	4.96%	1852.9	5.07%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-3.516e-01	1.0000	1553.0	13.02%	4818.4	13.18%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-3.515e-01	1.0000	458.0	3.84%	1437.2	3.93%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-3.509e-01	1.0000	528.0	4.43%	1654.3	4.53%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.501e-01	1.0000	39.0	0.33%	129.6	0.35%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.472e-01	1.0000	413.0	3.46%	1298.9	3.55%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-3.424e-01	1.0000	725.0	6.08%	2265.7	6.20%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-3.421e-01	1.0000	350.0	2.93%	1103.0	3.02%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.375e-01	1.0000	1061.0	8.90%	3304.1	9.04%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-3.373e-01	1.0000	1672.0	14.02%	5188.7	14.20%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.359e-01	1.0000	87.0	0.73%	282.3	0.77%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-3.340e-01	1.0000	962.0	8.07%	2999.8	8.21%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.333e-01	1.0000	31.0	0.26%	104.9	0.29%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.322e-01	1.0000	423.0	3.55%	1331.3	3.64%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.276e-01	1.0000	524.0	4.39%	1645.5	4.50%
 Ik-1	NHTTGGGAATRCC	1e0	-3.264e-01	1.0000	11927.0	100.00%	36547.6	100.00%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-3.256e-01	1.0000	83.0	0.70%	270.1	0.74%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-3.246e-01	1.0000	461.0	3.87%	1451.0	3.97%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-3.191e-01	1.0000	541.0	4.54%	1699.4	4.65%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-3.175e-01	1.0000	74.0	0.62%	242.7	0.66%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.161e-01	1.0000	1.0	0.01%	4.5	0.01%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-3.150e-01	1.0000	85.0	0.71%	277.5	0.76%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.137e-01	1.0000	67.0	0.56%	220.5	0.60%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-3.098e-01	1.0000	1480.0	12.41%	4603.0	12.59%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-3.095e-01	1.0000	2221.0	18.62%	6886.3	18.84%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-3.092e-01	1.0000	2042.0	17.12%	6335.5	17.33%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-3.086e-01	1.0000	2646.0	22.18%	8194.6	22.42%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-3.081e-01	1.0000	2552.0	21.40%	7905.4	21.63%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.021e-01	1.0000	26.0	0.22%	89.2	0.24%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-3.011e-01	1.0000	955.0	8.01%	2984.8	8.17%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-3.011e-01	1.0000	289.0	2.42%	918.1	2.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.976e-01	1.0000	947.0	7.94%	2960.8	8.10%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.928e-01	1.0000	152.0	1.27%	490.2	1.34%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.882e-01	1.0000	156.0	1.31%	503.4	1.38%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-2.778e-01	1.0000	819.0	6.87%	2568.3	7.03%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-2.769e-01	1.0000	848.0	7.11%	2658.5	7.27%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-2.752e-01	1.0000	1943.0	16.29%	6040.5	16.53%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.749e-01	1.0000	161.0	1.35%	520.3	1.42%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-2.734e-01	1.0000	75.0	0.63%	248.8	0.68%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-2.719e-01	1.0000	159.0	1.33%	514.0	1.41%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-2.701e-01	1.0000	1603.0	13.44%	4993.9	13.66%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.689e-01	1.0000	10.0	0.08%	37.0	0.10%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.621e-01	1.0000	274.0	2.30%	876.1	2.40%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-2.585e-01	1.0000	1857.0	15.57%	5780.4	15.82%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.574e-01	1.0000	55.0	0.46%	185.6	0.51%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.532e-01	1.0000	747.0	6.26%	2350.7	6.43%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.529e-01	1.0000	9.0	0.08%	34.0	0.09%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.495e-01	1.0000	616.0	5.16%	1944.7	5.32%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.481e-01	1.0000	260.0	2.18%	834.7	2.28%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.415e-01	1.0000	31.0	0.26%	108.2	0.30%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.399e-01	1.0000	46.0	0.39%	157.5	0.43%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-2.357e-01	1.0000	511.0	4.28%	1620.2	4.43%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.344e-01	1.0000	852.0	7.14%	2680.0	7.33%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-2.344e-01	1.0000	1766.0	14.81%	5507.1	15.07%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-2.336e-01	1.0000	1558.0	13.06%	4865.6	13.31%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-2.306e-01	1.0000	2619.0	21.96%	8138.5	22.27%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-2.250e-01	1.0000	2946.0	24.70%	9147.6	25.03%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-2.249e-01	1.0000	468.0	3.92%	1488.9	4.07%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.237e-01	1.0000	46.0	0.39%	158.6	0.43%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.231e-01	1.0000	271.0	2.27%	872.2	2.39%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-2.160e-01	1.0000	715.0	5.99%	2260.0	6.18%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.149e-01	1.0000	2370.0	19.87%	7378.0	20.19%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.142e-01	1.0000	702.0	5.89%	2219.6	6.07%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.136e-01	1.0000	2255.0	18.91%	7023.3	19.22%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.127e-01	1.0000	77.0	0.65%	259.2	0.71%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.127e-01	1.0000	77.0	0.65%	259.7	0.71%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-2.111e-01	1.0000	615.0	5.16%	1949.5	5.33%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-2.083e-01	1.0000	334.0	2.80%	1072.3	2.93%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-2.073e-01	1.0000	760.0	6.37%	2401.6	6.57%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.056e-01	1.0000	38.0	0.32%	133.1	0.36%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-2.030e-01	1.0000	5604.0	46.99%	17321.2	47.39%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.985e-01	1.0000	964.0	8.08%	3037.8	8.31%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.972e-01	1.0000	472.0	3.96%	1506.7	4.12%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.955e-01	1.0000	145.0	1.22%	478.9	1.31%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-1.948e-01	1.0000	6.0	0.05%	25.3	0.07%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.941e-01	1.0000	302.0	2.53%	974.2	2.67%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-1.930e-01	1.0000	29.0	0.24%	104.5	0.29%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.927e-01	1.0000	57.0	0.48%	196.2	0.54%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-1.915e-01	1.0000	96.0	0.80%	322.5	0.88%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.914e-01	1.0000	795.0	6.67%	2514.6	6.88%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.882e-01	1.0000	119.0	1.00%	396.5	1.08%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-1.881e-01	1.0000	403.0	3.38%	1292.5	3.54%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.843e-01	1.0000	435.0	3.65%	1393.8	3.81%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.838e-01	1.0000	419.0	3.51%	1343.4	3.68%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.824e-01	1.0000	158.0	1.32%	521.9	1.43%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.823e-01	1.0000	1867.0	15.65%	5838.6	15.98%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.766e-01	1.0000	1053.0	8.83%	3320.8	9.09%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.766e-01	1.0000	563.0	4.72%	1795.4	4.91%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.742e-01	1.0000	796.0	6.67%	2522.4	6.90%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-1.735e-01	1.0000	1599.0	13.41%	5013.1	13.72%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.723e-01	1.0000	74.0	0.62%	253.5	0.69%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.704e-01	1.0000	708.0	5.94%	2249.7	6.16%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-1.697e-01	1.0000	910.0	7.63%	2878.8	7.88%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.665e-01	1.0000	30.0	0.25%	109.6	0.30%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.656e-01	1.0000	178.0	1.49%	587.9	1.61%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-1.653e-01	1.0000	1491.0	12.50%	4682.1	12.81%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.637e-01	1.0000	182.0	1.53%	600.3	1.64%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.614e-01	1.0000	412.0	3.45%	1326.1	3.63%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.613e-01	1.0000	113.0	0.95%	380.9	1.04%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.598e-01	1.0000	819.0	6.87%	2598.2	7.11%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.557e-01	1.0000	159.0	1.33%	528.5	1.45%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.541e-01	1.0000	1294.0	10.85%	4076.3	11.15%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.538e-01	1.0000	230.0	1.93%	754.8	2.07%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.477e-01	1.0000	1672.0	14.02%	5250.2	14.37%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.468e-01	1.0000	444.0	3.72%	1430.1	3.91%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.468e-01	1.0000	17.0	0.14%	66.1	0.18%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.454e-01	1.0000	40.0	0.34%	144.7	0.40%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.453e-01	1.0000	108.0	0.91%	366.5	1.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.449e-01	1.0000	26.0	0.22%	97.6	0.27%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-1.436e-01	1.0000	1683.0	14.11%	5286.9	14.47%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.406e-01	1.0000	157.0	1.32%	524.2	1.43%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.401e-01	1.0000	363.0	3.04%	1177.8	3.22%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.396e-01	1.0000	1123.0	9.42%	3552.0	9.72%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-1.392e-01	1.0000	524.0	4.39%	1683.9	4.61%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-1.385e-01	1.0000	1566.0	13.13%	4926.9	13.48%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.378e-01	1.0000	832.0	6.98%	2646.6	7.24%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.370e-01	1.0000	20.0	0.17%	77.8	0.21%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.349e-01	1.0000	273.0	2.29%	894.0	2.45%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-1.347e-01	1.0000	162.0	1.36%	541.2	1.48%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.334e-01	1.0000	208.0	1.74%	688.7	1.88%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-1.334e-01	1.0000	1127.0	9.45%	3566.7	9.76%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.315e-01	1.0000	104.0	0.87%	355.2	0.97%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.300e-01	1.0000	51.0	0.43%	182.8	0.50%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.290e-01	1.0000	172.0	1.44%	574.9	1.57%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.265e-01	1.0000	993.0	8.33%	3152.7	8.63%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.249e-01	1.0000	332.0	2.78%	1083.6	2.96%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.236e-01	1.0000	455.0	3.81%	1471.4	4.03%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.236e-01	1.0000	116.0	0.97%	395.6	1.08%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.211e-01	1.0000	1233.0	10.34%	3901.9	10.68%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.188e-01	1.0000	292.0	2.45%	958.3	2.62%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.177e-01	1.0000	859.0	7.20%	2738.2	7.49%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.176e-01	1.0000	1273.0	10.67%	4027.3	11.02%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-1.168e-01	1.0000	719.0	6.03%	2301.7	6.30%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.159e-01	1.0000	466.0	3.91%	1508.9	4.13%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.151e-01	1.0000	372.0	3.12%	1212.1	3.32%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-1.146e-01	1.0000	114.0	0.96%	390.2	1.07%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.145e-01	1.0000	403.0	3.38%	1311.0	3.59%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.117e-01	1.0000	4033.0	33.81%	12555.5	34.35%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-1.092e-01	1.0000	361.0	3.03%	1179.6	3.23%
Tal1	CATCTG	1e0	-1.037e-01	1.0000	965.0	8.09%	3075.6	8.42%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.030e-01	1.0000	560.0	4.70%	1808.1	4.95%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.022e-01	1.0000	1373.0	11.51%	4346.2	11.89%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.005e-01	1.0000	29.0	0.24%	111.6	0.31%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-9.977e-02	1.0000	132.0	1.11%	451.3	1.23%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-9.958e-02	1.0000	1605.0	13.46%	5068.4	13.87%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-9.850e-02	1.0000	1560.0	13.08%	4929.0	13.49%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-9.256e-02	1.0000	1895.0	15.89%	5972.4	16.34%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-9.237e-02	1.0000	353.0	2.96%	1159.8	3.17%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-9.189e-02	1.0000	27.0	0.23%	105.4	0.29%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-9.188e-02	1.0000	77.0	0.65%	273.9	0.75%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-9.033e-02	1.0000	116.0	0.97%	401.6	1.10%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-8.840e-02	1.0000	178.0	1.49%	602.1	1.65%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-8.798e-02	1.0000	350.0	2.93%	1151.3	3.15%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-8.709e-02	1.0000	20.0	0.17%	81.8	0.22%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-8.683e-02	1.0000	625.0	5.24%	2019.1	5.52%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-8.569e-02	1.0000	519.0	4.35%	1686.8	4.62%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-8.420e-02	1.0000	1222.0	10.25%	3887.7	10.64%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-8.394e-02	1.0000	4240.0	35.55%	13216.4	36.16%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-8.304e-02	1.0000	1055.0	8.85%	3367.4	9.21%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.171e-02	1.0000	277.0	2.32%	921.1	2.52%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.052e-02	1.0000	875.0	7.34%	2806.2	7.68%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-7.895e-02	1.0000	2914.0	24.43%	9135.4	25.00%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.870e-02	1.0000	158.0	1.32%	541.0	1.48%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.870e-02	1.0000	400.0	3.35%	1313.2	3.59%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-7.738e-02	1.0000	244.0	2.05%	817.0	2.24%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-7.680e-02	1.0000	34.0	0.29%	131.3	0.36%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-7.419e-02	1.0000	900.0	7.55%	2888.9	7.90%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-7.406e-02	1.0000	498.0	4.18%	1625.5	4.45%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-7.061e-02	1.0000	786.0	6.59%	2533.6	6.93%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-6.990e-02	1.0000	140.0	1.17%	484.6	1.33%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-6.900e-02	1.0000	845.0	7.08%	2719.5	7.44%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-6.782e-02	1.0000	661.0	5.54%	2142.2	5.86%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-6.504e-02	1.0000	1201.0	10.07%	3835.9	10.50%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-6.441e-02	1.0000	227.0	1.90%	767.1	2.10%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-6.394e-02	1.0000	217.0	1.82%	736.0	2.01%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-6.289e-02	1.0000	9.0	0.08%	43.6	0.12%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-6.066e-02	1.0000	4.0	0.03%	23.4	0.06%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-5.914e-02	1.0000	18.0	0.15%	77.4	0.21%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-5.715e-02	1.0000	917.0	7.69%	2954.0	8.08%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.693e-02	1.0000	468.0	3.92%	1540.0	4.21%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-5.690e-02	1.0000	1060.0	8.89%	3401.9	9.31%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.630e-02	1.0000	79.0	0.66%	287.1	0.79%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-5.504e-02	1.0000	3.0	0.03%	19.7	0.05%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-5.433e-02	1.0000	137.0	1.15%	479.3	1.31%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-5.317e-02	1.0000	111.0	0.93%	394.5	1.08%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.305e-02	1.0000	915.0	7.67%	2950.9	8.07%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-5.302e-02	1.0000	472.0	3.96%	1554.8	4.25%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-5.165e-02	1.0000	213.0	1.79%	727.6	1.99%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-5.125e-02	1.0000	1038.0	8.70%	3337.7	9.13%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-4.992e-02	1.0000	1176.0	9.86%	3770.2	10.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-4.806e-02	1.0000	942.0	7.90%	3039.2	8.32%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.731e-02	1.0000	1995.0	16.73%	6324.1	17.30%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-4.712e-02	1.0000	192.0	1.61%	661.0	1.81%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-4.536e-02	1.0000	422.0	3.54%	1400.7	3.83%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-4.475e-02	1.0000	575.0	4.82%	1886.5	5.16%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-4.428e-02	1.0000	2841.0	23.82%	8950.5	24.49%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-4.249e-02	1.0000	220.0	1.84%	754.1	2.06%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.242e-02	1.0000	58.0	0.49%	220.9	0.60%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-4.135e-02	1.0000	166.0	1.39%	579.9	1.59%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.118e-02	1.0000	713.0	5.98%	2325.6	6.36%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-4.020e-02	1.0000	3997.0	33.51%	12525.4	34.27%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-3.935e-02	1.0000	189.0	1.58%	655.3	1.79%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-3.791e-02	1.0000	851.0	7.14%	2763.6	7.56%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-3.756e-02	1.0000	611.0	5.12%	2006.3	5.49%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-3.671e-02	1.0000	1392.0	11.67%	4460.3	12.20%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-3.642e-02	1.0000	84.0	0.70%	310.6	0.85%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.526e-02	1.0000	115.0	0.96%	414.5	1.13%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.516e-02	1.0000	288.0	2.41%	978.7	2.68%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.490e-02	1.0000	931.0	7.81%	3018.9	8.26%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-3.451e-02	1.0000	74.0	0.62%	277.4	0.76%
SeqBias: TA-repeat	TATATATATA	1e0	-3.210e-02	1.0000	2895.0	24.27%	9139.0	25.01%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-3.170e-02	1.0000	660.0	5.53%	2167.1	5.93%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-3.148e-02	1.0000	2524.0	21.16%	7990.2	21.86%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-3.138e-02	1.0000	242.0	2.03%	832.4	2.28%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-3.038e-02	1.0000	215.0	1.80%	745.9	2.04%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.996e-02	1.0000	51.0	0.43%	200.7	0.55%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-2.972e-02	1.0000	834.0	6.99%	2719.1	7.44%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.866e-02	1.0000	315.0	2.64%	1070.5	2.93%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-2.771e-02	1.0000	477.0	4.00%	1590.8	4.35%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-2.661e-02	1.0000	78.0	0.65%	294.1	0.80%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-2.639e-02	1.0000	454.0	3.81%	1518.5	4.15%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.515e-02	1.0000	114.0	0.96%	416.7	1.14%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-2.439e-02	1.0000	408.0	3.42%	1373.4	3.76%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-2.412e-02	1.0000	2410.0	20.21%	7652.8	20.94%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.396e-02	1.0000	645.0	5.41%	2129.0	5.83%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.196e-02	1.0000	889.0	7.45%	2904.6	7.95%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-2.134e-02	1.0000	669.0	5.61%	2209.2	6.04%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-2.050e-02	1.0000	650.0	5.45%	2150.2	5.88%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.961e-02	1.0000	306.0	2.57%	1050.9	2.88%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.946e-02	1.0000	106.0	0.89%	393.2	1.08%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-1.930e-02	1.0000	2157.0	18.09%	6878.1	18.82%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.862e-02	1.0000	107.0	0.90%	397.4	1.09%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.861e-02	1.0000	1133.0	9.50%	3679.2	10.07%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.804e-02	1.0000	1900.0	15.93%	6081.8	16.64%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-1.730e-02	1.0000	664.0	5.57%	2200.4	6.02%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.705e-02	1.0000	101.0	0.85%	378.2	1.03%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.675e-02	1.0000	194.0	1.63%	688.2	1.88%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.633e-02	1.0000	594.0	4.98%	1979.9	5.42%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.570e-02	1.0000	55.0	0.46%	221.4	0.61%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.566e-02	1.0000	53.0	0.44%	215.0	0.59%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.510e-02	1.0000	208.0	1.74%	737.0	2.02%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-1.465e-02	1.0000	764.0	6.41%	2523.8	6.91%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.449e-02	1.0000	962.0	8.07%	3150.0	8.62%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.373e-02	1.0000	763.0	6.40%	2522.4	6.90%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.363e-02	1.0000	305.0	2.56%	1055.1	2.89%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.360e-02	1.0000	38.0	0.32%	162.4	0.44%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.347e-02	1.0000	1341.0	11.24%	4346.1	11.89%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.338e-02	1.0000	423.0	3.55%	1437.7	3.93%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.321e-02	1.0000	2318.0	19.43%	7399.5	20.25%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.317e-02	1.0000	1392.0	11.67%	4507.9	12.33%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-1.270e-02	1.0000	754.0	6.32%	2496.5	6.83%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.223e-02	1.0000	627.0	5.26%	2093.9	5.73%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-1.192e-02	1.0000	168.0	1.41%	608.5	1.66%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.180e-02	1.0000	454.0	3.81%	1540.6	4.22%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.180e-02	1.0000	454.0	3.81%	1540.6	4.22%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.172e-02	1.0000	444.0	3.72%	1508.6	4.13%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.155e-02	1.0000	2909.0	24.39%	9242.7	25.29%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.143e-02	1.0000	601.0	5.04%	2012.6	5.51%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.141e-02	1.0000	611.0	5.12%	2044.9	5.60%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.127e-02	1.0000	604.0	5.06%	2022.1	5.53%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.110e-02	1.0000	2076.0	17.41%	6654.1	18.21%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.100e-02	1.0000	330.0	2.77%	1141.5	3.12%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-1.092e-02	1.0000	794.0	6.66%	2628.4	7.19%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.041e-02	1.0000	426.0	3.57%	1453.4	3.98%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.018e-02	1.0000	879.0	7.37%	2900.6	7.94%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.943e-03	1.0000	84.0	0.70%	327.1	0.89%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-9.706e-03	1.0000	259.0	2.17%	912.3	2.50%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-9.692e-03	1.0000	3317.0	27.81%	10516.8	28.78%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-9.530e-03	1.0000	747.0	6.26%	2483.9	6.80%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-8.933e-03	1.0000	646.0	5.42%	2163.3	5.92%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-8.667e-03	1.0000	606.0	5.08%	2036.7	5.57%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.949e-03	1.0000	125.0	1.05%	470.9	1.29%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-7.860e-03	1.0000	117.0	0.98%	443.0	1.21%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-7.792e-03	1.0000	562.0	4.71%	1898.4	5.19%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-7.331e-03	1.0000	135.0	1.13%	505.7	1.38%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-7.297e-03	1.0000	257.0	2.15%	911.8	2.49%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-7.190e-03	1.0000	680.0	5.70%	2278.5	6.23%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.941e-03	1.0000	1107.0	9.28%	3635.8	9.95%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-6.783e-03	1.0000	549.0	4.60%	1861.0	5.09%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-6.638e-03	1.0000	393.0	3.30%	1357.0	3.71%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-6.221e-03	1.0000	502.0	4.21%	1711.2	4.68%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-5.712e-03	1.0000	1439.0	12.07%	4689.1	12.83%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-5.675e-03	1.0000	1920.0	16.10%	6198.1	16.96%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-5.652e-03	1.0000	191.0	1.60%	697.9	1.91%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-5.595e-03	1.0000	634.0	5.32%	2138.7	5.85%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-5.497e-03	1.0000	565.0	4.74%	1917.8	5.25%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.221e-03	1.0000	266.0	2.23%	947.9	2.59%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.178e-03	1.0000	148.0	1.24%	554.4	1.52%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-5.076e-03	1.0000	1890.0	15.85%	6109.4	16.72%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-4.943e-03	1.0000	322.0	2.70%	1132.3	3.10%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.243e-03	1.0000	1671.0	14.01%	5430.5	14.86%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-4.113e-03	1.0000	398.0	3.34%	1384.2	3.79%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-3.962e-03	1.0000	992.0	8.32%	3290.0	9.00%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.919e-03	1.0000	302.0	2.53%	1071.3	2.93%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-3.898e-03	1.0000	1.0	0.01%	17.1	0.05%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.871e-03	1.0000	123.0	1.03%	473.0	1.29%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-3.852e-03	1.0000	555.0	4.65%	1894.9	5.18%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-3.703e-03	1.0000	2788.0	23.38%	8925.5	24.42%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-3.441e-03	1.0000	491.0	4.12%	1690.5	4.63%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.966e-03	1.0000	652.0	5.47%	2213.0	6.06%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-2.895e-03	1.0000	286.0	2.40%	1024.8	2.80%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.335e-03	1.0000	219.0	1.84%	805.2	2.20%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.320e-03	1.0000	157.0	1.32%	596.3	1.63%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.148e-03	1.0000	650.0	5.45%	2215.5	6.06%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-2.059e-03	1.0000	872.0	7.31%	2928.3	8.01%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.789e-03	1.0000	360.0	3.02%	1277.8	3.50%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.693e-03	1.0000	124.0	1.04%	487.3	1.33%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.406e-03	1.0000	200.0	1.68%	749.4	2.05%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.250e-04	1.0000	192.0	1.61%	728.8	1.99%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-8.300e-04	1.0000	1792.0	15.02%	5873.9	16.07%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-7.710e-04	1.0000	2425.0	20.33%	7862.4	21.51%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-5.350e-04	1.0000	260.0	2.18%	966.3	2.64%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.540e-04	1.0000	197.0	1.65%	755.1	2.07%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-4.520e-04	1.0000	454.0	3.81%	1613.1	4.41%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.110e-04	1.0000	826.0	6.93%	2824.3	7.73%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.580e-04	1.0000	273.0	2.29%	1016.5	2.78%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e0	-3.250e-04	1.0000	661.0	5.54%	2296.9	6.28%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-3.080e-04	1.0000	126.0	1.06%	514.7	1.41%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-2.060e-04	1.0000	434.0	3.64%	1562.1	4.27%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.820e-04	1.0000	456.0	3.82%	1637.7	4.48%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.740e-04	1.0000	586.0	4.91%	2065.0	5.65%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.640e-04	1.0000	1051.0	8.81%	3571.9	9.77%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.170e-04	1.0000	222.0	1.86%	859.1	2.35%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-9.500e-05	1.0000	3015.0	25.28%	9787.6	26.78%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-8.000e-05	1.0000	515.0	4.32%	1847.5	5.06%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.000e-05	1.0000	2500.0	20.96%	8250.4	22.57%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-5.000e-06	1.0000	747.0	6.26%	2665.4	7.29%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.000e-06	1.0000	294.0	2.46%	1152.7	3.15%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-0.000e+00	1.0000	622.0	5.22%	2309.9	6.32%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-0.000e+00	1.0000	396.0	3.32%	1554.4	4.25%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	1228.0	10.30%	4333.8	11.86%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-0.000e+00	1.0000	158.0	1.32%	786.9	2.15%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.4	0.01%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	2.0	0.01%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%