Information for 4-CCGACACAAAAT (Motif 7)

A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
Reverse Opposite:
C G T A C A G T A G C T A C G T C A G T A T C G A G C T A C T G A C G T A G T C A C T G C T A G
p-value:1e-21
log p-value:-4.953e+01
Information Content per bp:1.849
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets90.1 +/- 53.8bp
Average Position of motif in Background60.1 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NDT80/MA0343.1/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CCGACACAAAAT-----
TTTCCGGCCACAAAAACGCAA
 A C G T A C G T A C G T A C G T A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G A C T A G C T G A T C G T A C A C T G C T A G T G A C G A T C T C G A G T A C C G T A C T G A C G T A C T G A G C T A G A T C T A C G T G A C C G T A T G C A

Ng_0261(RRM)/Naegleria_gruberi-RNCMPT00261-PBM/HughesRNA

Match Rank:2
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:CCGACACAAAAT-
------CAAAATT
 A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A G A C T A G C T

SUM1/SUM1_YPD/16-SUM1(Harbison)/Yeast

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCGACACAAAAT
GCGTCAGAAAA-
 A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
T C A G G A T C A T C G G C A T A G T C C T G A T A C G G C T A T C G A G T C A G C T A A C G T

At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCGACACAAAAT
NYACCGACAHNNNNN
 A C G T A C G T A C G T A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
A G C T G A T C C T G A A G T C A G T C A C T G C G T A A G T C C T G A G T C A G C A T C G A T G C T A G C A T C G T A

ARF18/MA1689.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCGACACAAAAT
ACCCGACAAAAAT-
 A C G T A C G T A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
C G T A T A G C G A T C T G A C C T A G T C G A A T G C T G C A T C G A T C G A T C G A C G T A C G A T A C G T

At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCGACACAAAAT
HACCGACAHA----
 A C G T A C G T A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
G A T C C T G A G A T C G A T C C T A G G C T A A G T C C T G A G C T A C G T A A C G T A C G T A C G T A C G T

ERF027/MA1227.2/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCGACACAAAAT
TTTTGCCGACAAAAT--
 A C G T A C G T A C G T A C G T A C G T A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
G C A T C G A T G A C T G A C T C T A G G A T C G T A C C T A G G C T A G A T C C T G A G C T A G C T A C G T A G C A T A C G T A C G T

AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCGACACAAAAT
ACCGACAHWD---
 A C G T A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
C T G A A G T C G A T C C A T G G C T A G A T C C T G A G C T A G C T A C G A T A C G T A C G T A C G T

RAP2-10/MA0980.2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCGACACAAAAT
TTGCCGACAAAA---
 A C G T A C G T A C G T A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
G A C T G A C T C T A G G A T C T A G C C T A G G C T A G A T C C T G A G C T A G C T A C G T A A C G T A C G T A C G T

ORB2(RRM)/Drosophila_melanogaster-RNCMPT00126-PBM/HughesRNA

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CCGACACAAAAT
----CCCAAAC-
 A G T C T A G C T A C G C G T A A G T C C T G A A T G C G C T A C G T A C T G A G C T A A C G T
A C G T A C G T A C G T A C G T G T A C G T A C G T A C C G T A C G T A C G T A G T A C A C G T