Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12556)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 35819)	% of Background Sequences with Motif
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-110	-2.544e+02	0.0000	1808.0	14.40%	2994.5	8.36%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-105	-2.439e+02	0.0000	924.0	7.36%	1187.1	3.31%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-96	-2.211e+02	0.0000	2348.0	18.70%	4372.8	12.20%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-49	-1.131e+02	0.0000	4116.0	32.78%	9602.8	26.80%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-38	-8.832e+01	0.0000	4023.0	32.04%	9598.5	26.79%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-37	-8.741e+01	0.0000	539.0	4.29%	839.5	2.34%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-37	-8.652e+01	0.0000	1925.0	15.33%	4119.2	11.50%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-34	-8.033e+01	0.0000	2273.0	18.10%	5054.2	14.11%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-31	-7.363e+01	0.0000	1503.0	11.97%	3160.9	8.82%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-30	-6.951e+01	0.0000	1701.0	13.55%	3687.4	10.29%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-29	-6.826e+01	0.0000	4259.0	33.91%	10470.2	29.22%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-27	-6.412e+01	0.0000	1057.0	8.42%	2132.6	5.95%
SeqBias: CA-repeat	CACACACACA	1e-26	-6.110e+01	0.0000	5794.0	46.14%	14829.9	41.39%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-24	-5.601e+01	0.0000	2820.0	22.46%	6732.2	18.79%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-23	-5.522e+01	0.0000	4220.0	33.60%	10535.8	29.40%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-23	-5.370e+01	0.0000	6535.0	52.04%	17039.7	47.56%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-22	-5.164e+01	0.0000	391.0	3.11%	652.2	1.82%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-21	-5.035e+01	0.0000	5029.0	40.05%	12847.8	35.86%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-21	-4.898e+01	0.0000	3222.0	25.66%	7900.9	22.05%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-21	-4.869e+01	0.0000	1451.0	11.55%	3231.7	9.02%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-21	-4.856e+01	0.0000	2716.0	21.63%	6545.5	18.27%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-20	-4.742e+01	0.0000	1625.0	12.94%	3689.6	10.30%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-18	-4.300e+01	0.0000	1637.0	13.04%	3765.0	10.51%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-18	-4.198e+01	0.0000	1984.0	15.80%	4683.7	13.07%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-18	-4.197e+01	0.0000	6465.0	51.48%	17036.3	47.55%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-17	-4.043e+01	0.0000	1401.0	11.16%	3182.3	8.88%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-17	-4.029e+01	0.0000	984.0	7.84%	2125.8	5.93%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-17	-3.935e+01	0.0000	1172.0	9.33%	2607.4	7.28%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-16	-3.898e+01	0.0000	2454.0	19.54%	5969.7	16.66%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-16	-3.884e+01	0.0000	2666.0	21.23%	6540.4	18.25%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-16	-3.755e+01	0.0000	3678.0	29.29%	9313.0	25.99%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-16	-3.742e+01	0.0000	1632.0	13.00%	3813.0	10.64%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-16	-3.713e+01	0.0000	2747.0	21.87%	6783.8	18.93%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-16	-3.686e+01	0.0000	2008.0	15.99%	4809.3	13.42%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-15	-3.684e+01	0.0000	1440.0	11.47%	3320.1	9.27%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-15	-3.675e+01	0.0000	513.0	4.09%	1001.0	2.79%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-15	-3.526e+01	0.0000	890.0	7.09%	1932.4	5.39%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-15	-3.520e+01	0.0000	2244.0	17.87%	5459.5	15.24%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-14	-3.426e+01	0.0000	889.0	7.08%	1938.3	5.41%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-14	-3.370e+01	0.0000	2357.0	18.77%	5783.1	16.14%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-14	-3.347e+01	0.0000	1233.0	9.82%	2821.2	7.87%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-14	-3.340e+01	0.0000	1006.0	8.01%	2241.2	6.25%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-14	-3.326e+01	0.0000	1785.0	14.21%	4265.2	11.90%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-14	-3.297e+01	0.0000	664.0	5.29%	1390.3	3.88%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-14	-3.283e+01	0.0000	1444.0	11.50%	3375.4	9.42%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-13	-3.206e+01	0.0000	2396.0	19.08%	5912.1	16.50%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-13	-3.178e+01	0.0000	2515.0	20.03%	6237.3	17.41%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-13	-3.152e+01	0.0000	1812.0	14.43%	4359.8	12.17%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-13	-3.068e+01	0.0000	874.0	6.96%	1932.1	5.39%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-13	-3.018e+01	0.0000	1380.0	10.99%	3239.6	9.04%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-13	-3.017e+01	0.0000	538.0	4.28%	1103.3	3.08%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-13	-3.010e+01	0.0000	292.0	2.33%	525.5	1.47%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-12	-2.978e+01	0.0000	779.0	6.20%	1701.9	4.75%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-12	-2.969e+01	0.0000	523.0	4.16%	1070.5	2.99%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-12	-2.959e+01	0.0000	4055.0	32.29%	10496.0	29.29%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-12	-2.842e+01	0.0000	1648.0	13.12%	3967.0	11.07%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-12	-2.834e+01	0.0000	1876.0	14.94%	4573.1	12.76%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-12	-2.815e+01	0.0000	976.0	7.77%	2216.5	6.19%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-11	-2.729e+01	0.0000	1497.0	11.92%	3582.9	10.00%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-11	-2.710e+01	0.0000	2000.0	15.93%	4923.9	13.74%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-11	-2.684e+01	0.0000	975.0	7.76%	2227.5	6.22%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-11	-2.681e+01	0.0000	1181.0	9.40%	2760.1	7.70%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-11	-2.653e+01	0.0000	478.0	3.81%	983.2	2.74%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-11	-2.638e+01	0.0000	1161.0	9.25%	2713.9	7.57%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-11	-2.636e+01	0.0000	2248.0	17.90%	5602.1	15.63%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-11	-2.623e+01	0.0000	1585.0	12.62%	3829.9	10.69%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-11	-2.614e+01	0.0000	1057.0	8.42%	2446.8	6.83%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-10	-2.520e+01	0.0000	825.0	6.57%	1860.5	5.19%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-10	-2.504e+01	0.0000	901.0	7.17%	2056.2	5.74%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e-10	-2.500e+01	0.0000	436.0	3.47%	892.8	2.49%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-10	-2.453e+01	0.0000	1301.0	10.36%	3102.3	8.66%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-10	-2.447e+01	0.0000	1125.0	8.96%	2642.4	7.37%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-10	-2.421e+01	0.0000	2323.0	18.50%	5841.8	16.30%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-10	-2.411e+01	0.0000	1270.0	10.11%	3026.7	8.45%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e-10	-2.394e+01	0.0000	1121.0	8.93%	2638.2	7.36%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-10	-2.348e+01	0.0000	2386.0	19.00%	6025.1	16.82%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-10	-2.339e+01	0.0000	1159.0	9.23%	2744.8	7.66%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-9	-2.297e+01	0.0000	1721.0	13.70%	4239.8	11.83%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-9	-2.233e+01	0.0000	912.0	7.26%	2114.4	5.90%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-9	-2.223e+01	0.0000	1516.0	12.07%	3703.1	10.33%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-9	-2.219e+01	0.0000	875.0	6.97%	2020.5	5.64%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-9	-2.217e+01	0.0000	968.0	7.71%	2261.8	6.31%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-9	-2.183e+01	0.0000	931.0	7.41%	2169.4	6.05%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-9	-2.095e+01	0.0000	252.0	2.01%	480.9	1.34%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-8	-2.069e+01	0.0000	1271.0	10.12%	3075.2	8.58%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-8	-2.040e+01	0.0000	1455.0	11.59%	3569.0	9.96%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-8	-2.006e+01	0.0000	600.0	4.78%	1339.1	3.74%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-8	-1.915e+01	0.0000	477.0	3.80%	1038.3	2.90%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-7	-1.836e+01	0.0000	1425.0	11.35%	3520.6	9.83%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-7	-1.825e+01	0.0000	1354.0	10.78%	3332.3	9.30%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-7	-1.817e+01	0.0000	257.0	2.05%	508.3	1.42%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-7	-1.802e+01	0.0000	208.0	1.66%	394.4	1.10%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-7	-1.763e+01	0.0000	2471.0	19.68%	6371.1	17.78%
SeqBias: GA-repeat	GAGAGAGAGA	1e-7	-1.749e+01	0.0000	8506.0	67.73%	23444.0	65.43%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-7	-1.702e+01	0.0000	739.0	5.88%	1728.8	4.82%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-7	-1.643e+01	0.0000	6246.0	49.74%	16980.6	47.39%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-6	-1.571e+01	0.0000	103.0	0.82%	169.1	0.47%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-6	-1.540e+01	0.0000	1832.0	14.59%	4672.5	13.04%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-6	-1.450e+01	0.0000	232.0	1.85%	472.2	1.32%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e-5	-1.361e+01	0.0000	49.0	0.39%	66.0	0.18%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-5	-1.343e+01	0.0000	635.0	5.06%	1502.9	4.19%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-5	-1.340e+01	0.0000	2974.0	23.68%	7861.8	21.94%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-5	-1.339e+01	0.0000	509.0	4.05%	1176.7	3.28%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-5	-1.336e+01	0.0000	5506.0	43.84%	14972.0	41.78%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e-5	-1.335e+01	0.0000	1316.0	10.48%	3315.0	9.25%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-5	-1.284e+01	0.0000	3818.0	30.40%	10231.2	28.55%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-5	-1.277e+01	0.0000	19.0	0.15%	15.7	0.04%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-5	-1.268e+01	0.0000	239.0	1.90%	502.3	1.40%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-5	-1.205e+01	0.0001	2460.0	19.59%	6473.3	18.07%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-5	-1.180e+01	0.0001	1046.0	8.33%	2616.2	7.30%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-5	-1.173e+01	0.0001	2407.0	19.17%	6335.9	17.68%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-5	-1.160e+01	0.0001	1351.0	10.76%	3443.5	9.61%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-4	-1.149e+01	0.0001	1980.0	15.77%	5164.0	14.41%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-4	-1.133e+01	0.0001	1106.0	8.81%	2786.4	7.78%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-4	-1.128e+01	0.0001	1599.0	12.73%	4125.9	11.51%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-4	-1.092e+01	0.0002	327.0	2.60%	737.6	2.06%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-4	-1.018e+01	0.0003	2238.0	17.82%	5910.6	16.50%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-4	-9.944e+00	0.0004	256.0	2.04%	567.7	1.58%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-4	-9.474e+00	0.0006	967.0	7.70%	2447.2	6.83%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-4	-9.353e+00	0.0007	2202.0	17.53%	5834.6	16.28%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-3	-9.161e+00	0.0009	2114.0	16.83%	5596.4	15.62%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-3	-9.087e+00	0.0009	347.0	2.76%	808.6	2.26%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e-3	-9.020e+00	0.0010	16.0	0.13%	15.4	0.04%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-3	-8.897e+00	0.0011	2165.0	17.24%	5745.9	16.04%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-3	-8.790e+00	0.0012	2232.0	17.77%	5934.1	16.56%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-3	-8.761e+00	0.0013	279.0	2.22%	637.3	1.78%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-3	-8.501e+00	0.0016	1991.0	15.85%	5275.9	14.72%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-3	-8.333e+00	0.0019	1260.0	10.03%	3268.5	9.12%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-8.317e+00	0.0019	769.0	6.12%	1936.6	5.40%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-3	-8.294e+00	0.0019	252.0	2.01%	573.6	1.60%
SeqBias: C/A-bias	MMMMMMMMMM	1e-3	-8.212e+00	0.0021	12525.0	99.74%	35667.0	99.54%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-3	-8.001e+00	0.0026	529.0	4.21%	1300.4	3.63%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-7.874e+00	0.0029	1227.0	9.77%	3189.5	8.90%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e-3	-7.718e+00	0.0033	434.0	3.46%	1053.6	2.94%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-3	-7.328e+00	0.0049	724.0	5.77%	1834.4	5.12%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-3	-7.278e+00	0.0051	2536.0	20.19%	6830.3	19.06%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-3	-7.220e+00	0.0054	12521.0	99.71%	35658.1	99.52%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-3	-7.207e+00	0.0054	2159.0	17.19%	5782.2	16.14%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-3	-7.179e+00	0.0055	2077.0	16.54%	5556.0	15.51%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.106e+00	0.0059	1760.0	14.01%	4678.2	13.06%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-2	-6.778e+00	0.0081	6506.0	51.81%	18074.2	50.44%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-2	-6.636e+00	0.0093	589.0	4.69%	1484.2	4.14%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-2	-6.609e+00	0.0095	225.0	1.79%	522.7	1.46%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-6.582e+00	0.0097	1286.0	10.24%	3385.9	9.45%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-2	-6.564e+00	0.0098	977.0	7.78%	2538.6	7.08%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-2	-6.426e+00	0.0112	6466.0	51.49%	17977.4	50.17%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-6.287e+00	0.0127	4683.0	37.29%	12914.3	36.04%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-2	-6.278e+00	0.0128	409.0	3.26%	1009.1	2.82%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.146e+00	0.0145	5643.0	44.94%	15646.8	43.67%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-6.033e+00	0.0161	479.0	3.81%	1200.3	3.35%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-2	-5.995e+00	0.0166	1286.0	10.24%	3402.7	9.50%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-2	-5.963e+00	0.0170	455.0	3.62%	1137.2	3.17%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-5.952e+00	0.0171	1201.0	9.56%	3169.1	8.84%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-2	-5.935e+00	0.0173	429.0	3.42%	1068.5	2.98%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.784e+00	0.0200	371.0	2.95%	916.8	2.56%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-2	-5.696e+00	0.0217	124.0	0.99%	274.9	0.77%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-2	-5.684e+00	0.0218	1476.0	11.75%	3937.3	10.99%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-5.677e+00	0.0218	310.0	2.47%	756.9	2.11%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-5.561e+00	0.0243	1158.0	9.22%	3062.4	8.55%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-2	-5.543e+00	0.0246	833.0	6.63%	2170.0	6.06%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.523e+00	0.0250	1742.0	13.87%	4681.1	13.06%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-2	-5.450e+00	0.0267	1842.0	14.67%	4962.7	13.85%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-2	-5.441e+00	0.0268	2394.0	19.06%	6504.6	18.15%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.398e+00	0.0278	77.0	0.61%	160.8	0.45%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.385e+00	0.0279	48.0	0.38%	91.8	0.26%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-2	-5.367e+00	0.0283	723.0	5.76%	1874.0	5.23%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-2	-5.360e+00	0.0283	1493.0	11.89%	3995.4	11.15%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-2	-5.317e+00	0.0294	1077.0	8.58%	2846.7	7.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.228e+00	0.0319	2505.0	19.95%	6824.8	19.05%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-2	-5.226e+00	0.0319	110.0	0.88%	243.2	0.68%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-5.219e+00	0.0319	217.0	1.73%	518.3	1.45%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-2	-5.191e+00	0.0326	2247.0	17.89%	6103.6	17.03%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-2	-5.164e+00	0.0333	2825.0	22.50%	7725.7	21.56%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-2	-5.141e+00	0.0338	20.0	0.16%	30.4	0.08%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-2	-5.070e+00	0.0361	162.0	1.29%	377.6	1.05%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.049e+00	0.0367	105.0	0.84%	232.4	0.65%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-2	-4.970e+00	0.0395	467.0	3.72%	1188.5	3.32%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-2	-4.959e+00	0.0397	70.0	0.56%	146.3	0.41%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-4.902e+00	0.0418	445.0	3.54%	1130.4	3.15%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-2	-4.843e+00	0.0441	209.0	1.66%	502.9	1.40%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-2	-4.830e+00	0.0444	588.0	4.68%	1519.9	4.24%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-2	-4.788e+00	0.0460	1651.0	13.15%	4455.6	12.43%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-4.764e+00	0.0469	1068.0	8.50%	2838.6	7.92%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-4.724e+00	0.0485	64.0	0.51%	133.6	0.37%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-4.724e+00	0.0485	1672.0	13.31%	4516.7	12.61%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-2	-4.696e+00	0.0494	125.0	1.00%	286.8	0.80%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-2	-4.631e+00	0.0524	616.0	4.91%	1600.7	4.47%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-2	-4.606e+00	0.0535	2366.0	18.84%	6462.9	18.04%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-1	-4.584e+00	0.0544	2433.0	19.37%	6651.8	18.56%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-1	-4.583e+00	0.0544	1084.0	8.63%	2888.2	8.06%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.566e+00	0.0548	1802.0	14.35%	4885.2	13.63%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-1	-4.545e+00	0.0557	2324.0	18.51%	6347.4	17.71%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-1	-4.525e+00	0.0565	2990.0	23.81%	8220.6	22.94%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-4.469e+00	0.0594	110.0	0.88%	250.7	0.70%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-1	-4.449e+00	0.0603	1479.0	11.78%	3989.1	11.13%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-4.448e+00	0.0603	3760.0	29.94%	10397.4	29.02%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-4.323e+00	0.0677	2540.0	20.23%	6964.2	19.44%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-1	-4.253e+00	0.0722	726.0	5.78%	1911.6	5.34%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-4.242e+00	0.0727	21.0	0.17%	35.4	0.10%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-4.190e+00	0.0762	765.0	6.09%	2020.6	5.64%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-4.180e+00	0.0766	119.0	0.95%	276.1	0.77%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-1	-4.150e+00	0.0785	1889.0	15.04%	5146.4	14.36%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e-1	-4.139e+00	0.0790	1123.0	8.94%	3011.9	8.41%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-4.032e+00	0.0875	185.0	1.47%	450.5	1.26%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.994e+00	0.0904	421.0	3.35%	1084.5	3.03%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-1	-3.984e+00	0.0908	1284.0	10.22%	3464.6	9.67%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-3.957e+00	0.0930	548.0	4.36%	1431.9	4.00%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-1	-3.927e+00	0.0953	47.0	0.37%	97.2	0.27%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.922e+00	0.0953	141.0	1.12%	336.6	0.94%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.896e+00	0.0973	847.0	6.74%	2255.0	6.29%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e-1	-3.860e+00	0.1004	242.0	1.93%	604.9	1.69%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.850e+00	0.1010	782.0	6.23%	2077.0	5.80%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-1	-3.840e+00	0.1015	1794.0	14.29%	4894.3	13.66%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-3.831e+00	0.1020	168.0	1.34%	408.6	1.14%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.779e+00	0.1069	32.0	0.25%	62.8	0.18%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-1	-3.725e+00	0.1123	1123.0	8.94%	3026.1	8.45%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-1	-3.652e+00	0.1203	81.0	0.65%	184.7	0.52%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-3.606e+00	0.1254	395.0	3.15%	1022.8	2.85%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-1	-3.605e+00	0.1254	435.0	3.46%	1131.2	3.16%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-1	-3.580e+00	0.1274	1754.0	13.97%	4794.9	13.38%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-1	-3.563e+00	0.1291	1259.0	10.03%	3411.9	9.52%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-3.558e+00	0.1292	3348.0	26.66%	9284.4	25.91%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-3.528e+00	0.1325	12008.0	95.62%	34133.5	95.26%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-3.511e+00	0.1341	11871.0	94.53%	33729.6	94.13%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-1	-3.315e+00	0.1625	2029.0	16.16%	5579.5	15.57%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-1	-3.296e+00	0.1648	299.0	2.38%	768.7	2.15%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-3.292e+00	0.1649	453.0	3.61%	1188.2	3.32%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-3.234e+00	0.1738	1181.0	9.40%	3207.2	8.95%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-3.216e+00	0.1762	319.0	2.54%	824.7	2.30%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-3.214e+00	0.1762	677.0	5.39%	1807.5	5.04%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-1	-3.174e+00	0.1822	1453.0	11.57%	3970.4	11.08%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e-1	-3.174e+00	0.1822	590.0	4.70%	1568.7	4.38%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-3.166e+00	0.1822	2613.0	20.81%	7232.1	20.18%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.166e+00	0.1822	688.0	5.48%	1839.9	5.13%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-3.165e+00	0.1822	103.0	0.82%	246.6	0.69%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-1	-3.161e+00	0.1822	130.0	1.04%	317.2	0.89%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-3.117e+00	0.1879	371.0	2.95%	968.8	2.70%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-1	-3.107e+00	0.1891	1359.0	10.82%	3710.7	10.36%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-1	-3.107e+00	0.1891	92.0	0.73%	218.5	0.61%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.102e+00	0.1891	113.0	0.90%	273.9	0.76%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-1	-3.101e+00	0.1891	2177.0	17.34%	6007.7	16.77%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.074e+00	0.1923	270.0	2.15%	694.3	1.94%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.020e+00	0.2020	2.0	0.02%	1.2	0.00%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-1	-3.009e+00	0.2034	1856.0	14.78%	5109.5	14.26%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-1	-2.974e+00	0.2098	1866.0	14.86%	5139.5	14.34%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.956e+00	0.2127	1113.0	8.86%	3029.6	8.46%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-1	-2.947e+00	0.2137	5120.0	40.77%	14353.1	40.06%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-1	-2.848e+00	0.2350	343.0	2.73%	898.4	2.51%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-1	-2.830e+00	0.2383	1204.0	9.59%	3289.8	9.18%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-1	-2.828e+00	0.2383	1920.0	15.29%	5299.6	14.79%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-2.790e+00	0.2462	66.0	0.53%	154.5	0.43%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-1	-2.768e+00	0.2507	5883.0	46.85%	16540.1	46.16%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-1	-2.736e+00	0.2579	308.0	2.45%	805.8	2.25%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.723e+00	0.2602	272.0	2.17%	707.3	1.97%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-1	-2.722e+00	0.2602	3451.0	27.48%	9631.0	26.88%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-2.718e+00	0.2602	1357.0	10.81%	3723.9	10.39%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.680e+00	0.2683	115.0	0.92%	284.8	0.79%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-1	-2.659e+00	0.2731	1523.0	12.13%	4192.8	11.70%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-2.633e+00	0.2793	2549.0	20.30%	7085.1	19.77%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-2.626e+00	0.2801	779.0	6.20%	2111.3	5.89%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-2.601e+00	0.2860	454.0	3.62%	1210.5	3.38%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-2.589e+00	0.2883	183.0	1.46%	468.9	1.31%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-2.586e+00	0.2883	1314.0	10.46%	3609.4	10.07%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.581e+00	0.2886	622.0	4.95%	1676.2	4.68%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-1	-2.554e+00	0.2951	136.0	1.08%	342.8	0.96%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-1	-2.542e+00	0.2978	89.0	0.71%	217.8	0.61%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-1	-2.536e+00	0.2985	1730.0	13.78%	4781.2	13.34%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-1	-2.532e+00	0.2985	1074.0	8.55%	2939.8	8.20%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.525e+00	0.2995	44.0	0.35%	100.4	0.28%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-2.524e+00	0.2995	1036.0	8.25%	2833.8	7.91%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-1	-2.513e+00	0.3007	79.0	0.63%	191.0	0.53%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.503e+00	0.3025	40.0	0.32%	90.3	0.25%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-1	-2.470e+00	0.3117	184.0	1.47%	473.0	1.32%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-1	-2.460e+00	0.3136	991.0	7.89%	2710.4	7.56%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-1	-2.448e+00	0.3162	247.0	1.97%	645.1	1.80%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e-1	-2.428e+00	0.3214	287.0	2.29%	755.2	2.11%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-1	-2.402e+00	0.3289	3550.0	28.27%	9936.9	27.73%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-1	-2.398e+00	0.3289	49.0	0.39%	114.3	0.32%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.390e+00	0.3303	540.0	4.30%	1455.8	4.06%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-1	-2.375e+00	0.3343	1016.0	8.09%	2784.3	7.77%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e-1	-2.357e+00	0.3391	448.0	3.57%	1201.9	3.35%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-1	-2.338e+00	0.3442	197.0	1.57%	511.3	1.43%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-1	-2.323e+00	0.3482	978.0	7.79%	2680.5	7.48%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.295e+00	0.3568	2377.0	18.93%	6622.9	18.48%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.292e+00	0.3569	431.0	3.43%	1156.3	3.23%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-2.286e+00	0.3578	73.0	0.58%	178.6	0.50%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.269e+00	0.3623	27.0	0.22%	59.3	0.17%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.263e+00	0.3635	1443.0	11.49%	3989.2	11.13%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.254e+00	0.3654	761.0	6.06%	2076.4	5.80%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-2.242e+00	0.3685	2996.0	23.86%	8378.9	23.38%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.208e+00	0.3799	39.0	0.31%	90.1	0.25%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-2.199e+00	0.3822	197.0	1.57%	514.1	1.43%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-2.198e+00	0.3822	440.0	3.50%	1185.0	3.31%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-2.185e+00	0.3849	187.0	1.49%	487.6	1.36%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.166e+00	0.3907	246.0	1.96%	649.5	1.81%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.157e+00	0.3932	275.0	2.19%	729.1	2.03%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-2.143e+00	0.3971	610.0	4.86%	1660.0	4.63%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-2.133e+00	0.3998	797.0	6.35%	2182.7	6.09%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.124e+00	0.4021	51.0	0.41%	122.9	0.34%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.121e+00	0.4021	283.0	2.25%	753.0	2.10%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.117e+00	0.4024	243.0	1.94%	642.9	1.79%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-2.107e+00	0.4051	244.0	1.94%	645.1	1.80%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-2.084e+00	0.4132	30.0	0.24%	68.5	0.19%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-2.058e+00	0.4224	457.0	3.64%	1236.7	3.45%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.046e+00	0.4264	496.0	3.95%	1345.6	3.76%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.042e+00	0.4268	446.0	3.55%	1206.3	3.37%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-2.023e+00	0.4333	449.0	3.58%	1215.1	3.39%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-2.019e+00	0.4336	839.0	6.68%	2305.3	6.43%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.016e+00	0.4336	7.0	0.06%	12.2	0.03%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-2.013e+00	0.4336	1933.0	15.39%	5387.4	15.04%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.001e+00	0.4372	1158.0	9.22%	3202.2	8.94%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.984e+00	0.4432	1304.0	10.38%	3614.2	10.09%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.957e+00	0.4542	1910.0	15.21%	5326.7	14.87%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.950e+00	0.4558	1008.0	8.03%	2783.7	7.77%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.949e+00	0.4558	684.0	5.45%	1874.6	5.23%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-1.940e+00	0.4574	3563.0	28.37%	10012.3	27.94%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.933e+00	0.4590	297.0	2.37%	796.1	2.22%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.927e+00	0.4606	878.0	6.99%	2419.1	6.75%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-1.923e+00	0.4612	466.0	3.71%	1266.8	3.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.921e+00	0.4612	374.0	2.98%	1010.2	2.82%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-1.920e+00	0.4612	567.0	4.52%	1548.7	4.32%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.907e+00	0.4641	61.0	0.49%	151.7	0.42%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.898e+00	0.4668	2022.0	16.10%	5647.4	15.76%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-1.897e+00	0.4668	2628.0	20.93%	7364.0	20.55%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.896e+00	0.4668	29.0	0.23%	67.9	0.19%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.877e+00	0.4722	367.0	2.92%	992.6	2.77%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.864e+00	0.4770	72.0	0.57%	181.9	0.51%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.850e+00	0.4821	273.0	2.17%	732.5	2.04%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-1.848e+00	0.4821	1092.0	8.70%	3025.7	8.44%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.846e+00	0.4821	811.0	6.46%	2235.4	6.24%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.844e+00	0.4821	178.0	1.42%	470.4	1.31%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.829e+00	0.4864	133.0	1.06%	347.4	0.97%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-1.823e+00	0.4879	796.0	6.34%	2194.2	6.12%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.820e+00	0.4879	17.0	0.14%	37.5	0.10%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.820e+00	0.4879	17.0	0.14%	38.0	0.11%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.816e+00	0.4879	1732.0	13.79%	4834.0	13.49%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.791e+00	0.4979	768.0	6.12%	2117.3	5.91%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.784e+00	0.4999	482.0	3.84%	1316.0	3.67%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.768e+00	0.5067	329.0	2.62%	890.3	2.48%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.764e+00	0.5069	550.0	4.38%	1507.8	4.21%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.764e+00	0.5069	2130.0	16.96%	5963.8	16.64%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.746e+00	0.5133	681.0	5.42%	1875.5	5.23%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.743e+00	0.5135	687.0	5.47%	1892.3	5.28%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-1.730e+00	0.5183	1577.0	12.56%	4402.0	12.29%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.706e+00	0.5294	1674.0	13.33%	4677.3	13.05%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.702e+00	0.5301	21.0	0.17%	48.2	0.13%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.694e+00	0.5328	245.0	1.95%	659.7	1.84%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.694e+00	0.5328	1132.0	9.01%	3147.1	8.78%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-1.690e+00	0.5328	432.0	3.44%	1180.4	3.29%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.672e+00	0.5402	1084.0	8.63%	3013.6	8.41%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.664e+00	0.5426	1283.0	10.22%	3575.3	9.98%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.644e+00	0.5522	44.0	0.35%	109.1	0.30%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.633e+00	0.5567	183.0	1.46%	489.9	1.37%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.631e+00	0.5567	67.0	0.53%	171.3	0.48%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.624e+00	0.5583	863.0	6.87%	2393.8	6.68%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e0	-1.619e+00	0.5597	1329.0	10.58%	3708.9	10.35%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.585e+00	0.5774	607.0	4.83%	1675.8	4.68%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.553e+00	0.5949	312.0	2.48%	850.8	2.37%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.529e+00	0.6071	2725.0	21.70%	7672.0	21.41%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.524e+00	0.6087	73.0	0.58%	189.2	0.53%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.523e+00	0.6087	2107.0	16.78%	5918.2	16.52%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-1.492e+00	0.6252	484.0	3.85%	1334.4	3.72%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-1.465e+00	0.6404	418.0	3.33%	1150.9	3.21%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-1.457e+00	0.6437	487.0	3.88%	1344.4	3.75%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.451e+00	0.6462	584.0	4.65%	1617.8	4.52%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.443e+00	0.6490	67.0	0.53%	174.3	0.49%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.440e+00	0.6495	127.0	1.01%	339.8	0.95%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.430e+00	0.6543	2146.0	17.09%	6037.4	16.85%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.412e+00	0.6643	31.0	0.25%	77.7	0.22%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.411e+00	0.6643	12.0	0.10%	27.7	0.08%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.410e+00	0.6643	1300.0	10.35%	3641.6	10.16%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.406e+00	0.6643	537.0	4.28%	1487.9	4.15%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.402e+00	0.6643	203.0	1.62%	551.8	1.54%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.395e+00	0.6665	6.0	0.05%	12.6	0.04%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-1.381e+00	0.6740	506.0	4.03%	1401.2	3.91%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.359e+00	0.6872	2430.0	19.35%	6850.5	19.12%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.352e+00	0.6901	355.0	2.83%	978.8	2.73%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.339e+00	0.6974	767.0	6.11%	2139.6	5.97%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.333e+00	0.6997	143.0	1.14%	387.0	1.08%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.330e+00	0.7005	759.0	6.04%	2117.4	5.91%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.310e+00	0.7125	636.0	5.06%	1771.9	4.95%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.302e+00	0.7164	2147.0	17.10%	6052.4	16.89%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.300e+00	0.7164	32.0	0.25%	81.2	0.23%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-1.292e+00	0.7194	1421.0	11.32%	3993.7	11.15%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.289e+00	0.7197	5.0	0.04%	10.3	0.03%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-1.268e+00	0.7332	554.0	4.41%	1542.1	4.30%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.257e+00	0.7393	653.0	5.20%	1822.8	5.09%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.257e+00	0.7393	676.0	5.38%	1887.7	5.27%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.254e+00	0.7393	1741.0	13.86%	4904.5	13.69%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.251e+00	0.7393	378.0	3.01%	1047.7	2.92%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-1.248e+00	0.7393	1322.0	10.53%	3716.2	10.37%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.245e+00	0.7393	65.0	0.52%	172.7	0.48%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.229e+00	0.7490	460.0	3.66%	1279.2	3.57%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.221e+00	0.7527	429.0	3.42%	1192.1	3.33%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-1.220e+00	0.7527	446.0	3.55%	1240.7	3.46%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.219e+00	0.7527	1.0	0.01%	1.4	0.00%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.185e+00	0.7750	193.0	1.54%	530.6	1.48%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.183e+00	0.7750	70.0	0.56%	187.8	0.52%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.175e+00	0.7786	453.0	3.61%	1263.0	3.52%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.172e+00	0.7787	14.0	0.11%	34.4	0.10%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-1.164e+00	0.7831	259.0	2.06%	716.7	2.00%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.161e+00	0.7838	59.0	0.47%	157.4	0.44%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-1.161e+00	0.7838	368.0	2.93%	1023.6	2.86%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.153e+00	0.7861	114.0	0.91%	310.2	0.87%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.130e+00	0.8021	376.0	2.99%	1047.9	2.92%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.129e+00	0.8021	208.0	1.66%	574.3	1.60%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-1.120e+00	0.8061	194.0	1.54%	535.6	1.49%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.116e+00	0.8080	352.0	2.80%	980.5	2.74%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.086e+00	0.8307	1297.0	10.33%	3659.0	10.21%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.083e+00	0.8311	862.0	6.86%	2425.8	6.77%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.075e+00	0.8354	1794.0	14.29%	5072.7	14.16%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.072e+00	0.8356	241.0	1.92%	669.2	1.87%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.066e+00	0.8391	270.0	2.15%	751.5	2.10%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.056e+00	0.8450	107.0	0.85%	293.0	0.82%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.054e+00	0.8453	912.0	7.26%	2569.3	7.17%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.050e+00	0.8461	55.0	0.44%	148.2	0.41%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.047e+00	0.8471	3.0	0.02%	6.3	0.02%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.042e+00	0.8488	38.0	0.30%	101.4	0.28%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.042e+00	0.8488	930.0	7.41%	2621.8	7.32%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.042e+00	0.8488	1035.0	8.24%	2919.6	8.15%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.036e+00	0.8488	2109.0	16.79%	5972.2	16.67%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.031e+00	0.8499	301.0	2.40%	840.9	2.35%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.031e+00	0.8499	434.0	3.46%	1216.4	3.39%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.028e+00	0.8499	142.0	1.13%	392.2	1.09%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-1.026e+00	0.8499	882.0	7.02%	2486.2	6.94%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.026e+00	0.8499	48.0	0.38%	129.9	0.36%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-1.020e+00	0.8499	1442.0	11.48%	4077.3	11.38%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.019e+00	0.8499	521.0	4.15%	1463.8	4.09%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.014e+00	0.8504	277.0	2.21%	773.3	2.16%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.008e+00	0.8537	290.0	2.31%	810.7	2.26%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.002e+00	0.8566	50.0	0.40%	135.1	0.38%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-9.810e-01	0.8731	118.0	0.94%	326.2	0.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-9.806e-01	0.8731	427.0	3.40%	1199.9	3.35%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-9.786e-01	0.8731	25.0	0.20%	66.6	0.19%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-9.738e-01	0.8734	253.0	2.01%	707.2	1.97%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-9.698e-01	0.8748	1391.0	11.08%	3937.4	10.99%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.687e-01	0.8748	104.0	0.83%	287.8	0.80%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-9.663e-01	0.8748	319.0	2.54%	895.0	2.50%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.620e-01	0.8757	165.0	1.31%	459.6	1.28%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-9.610e-01	0.8757	647.0	5.15%	1824.0	5.09%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-9.576e-01	0.8757	1495.0	11.90%	4234.6	11.82%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-9.551e-01	0.8757	1247.0	9.93%	3529.9	9.85%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-9.525e-01	0.8760	31.0	0.25%	83.9	0.23%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-9.517e-01	0.8760	1377.0	10.97%	3899.5	10.88%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-9.514e-01	0.8760	2069.0	16.48%	5868.2	16.38%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-9.392e-01	0.8818	819.0	6.52%	2314.2	6.46%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-9.336e-01	0.8848	734.0	5.84%	2073.4	5.79%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-9.301e-01	0.8859	28.0	0.22%	75.2	0.21%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.297e-01	0.8859	1020.0	8.12%	2886.3	8.06%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-9.244e-01	0.8870	570.0	4.54%	1608.3	4.49%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.134e-01	0.8948	181.0	1.44%	506.1	1.41%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e0	-9.104e-01	0.8956	1230.0	9.79%	3485.8	9.73%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-8.892e-01	0.9127	169.0	1.35%	473.6	1.32%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-8.658e-01	0.9322	23.0	0.18%	62.9	0.18%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-8.597e-01	0.9359	784.0	6.24%	2221.4	6.20%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-8.592e-01	0.9359	397.0	3.16%	1121.7	3.13%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-8.562e-01	0.9359	39.0	0.31%	107.2	0.30%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.448e-01	0.9437	51.0	0.41%	141.9	0.40%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-8.437e-01	0.9437	536.0	4.27%	1517.2	4.23%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.423e-01	0.9437	144.0	1.15%	404.6	1.13%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.404e-01	0.9437	30.0	0.24%	82.6	0.23%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-8.399e-01	0.9437	417.0	3.32%	1179.2	3.29%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-8.277e-01	0.9497	3335.0	26.56%	9492.5	26.49%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-8.254e-01	0.9497	265.0	2.11%	748.6	2.09%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-8.192e-01	0.9536	644.0	5.13%	1826.1	5.10%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-8.189e-01	0.9536	119.0	0.95%	334.1	0.93%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-8.144e-01	0.9541	3423.0	27.26%	9745.2	27.20%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-8.118e-01	0.9545	804.0	6.40%	2282.4	6.37%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-8.041e-01	0.9598	1137.0	9.05%	3231.7	9.02%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-8.009e-01	0.9609	235.0	1.87%	664.5	1.85%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-8.004e-01	0.9609	401.0	3.19%	1136.4	3.17%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-8.000e-01	0.9609	929.0	7.40%	2639.7	7.37%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-7.964e-01	0.9609	1733.0	13.80%	4930.8	13.76%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-7.923e-01	0.9610	534.0	4.25%	1515.0	4.23%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-7.882e-01	0.9629	910.0	7.25%	2586.1	7.22%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.853e-01	0.9637	145.0	1.15%	409.5	1.14%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-7.844e-01	0.9637	202.0	1.61%	571.0	1.59%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-7.824e-01	0.9637	305.0	2.43%	864.7	2.41%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-7.729e-01	0.9696	1252.0	9.97%	3562.4	9.94%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-7.663e-01	0.9740	1317.0	10.49%	3748.5	10.46%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-7.636e-01	0.9746	106.0	0.84%	299.1	0.83%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-7.631e-01	0.9746	32.0	0.25%	89.2	0.25%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-7.584e-01	0.9756	2897.0	23.07%	8254.9	23.04%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-7.475e-01	0.9843	563.0	4.48%	1601.4	4.47%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.431e-01	0.9865	532.0	4.24%	1513.7	4.22%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-7.406e-01	0.9870	894.0	7.12%	2545.4	7.10%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.393e-01	0.9870	295.0	2.35%	838.0	2.34%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-7.391e-01	0.9870	1009.0	8.03%	2873.9	8.02%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-7.373e-01	0.9870	702.0	5.59%	1998.6	5.58%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.361e-01	0.9870	283.0	2.25%	804.8	2.25%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.296e-01	0.9878	332.0	2.64%	944.5	2.64%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.260e-01	0.9893	108.0	0.86%	306.6	0.86%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-7.192e-01	0.9941	484.0	3.85%	1378.6	3.85%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-7.127e-01	0.9985	521.0	4.15%	1484.2	4.14%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.088e-01	1.0000	233.0	1.86%	663.4	1.85%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-7.040e-01	1.0000	1170.0	9.32%	3336.1	9.31%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.960e-01	1.0000	34.0	0.27%	96.2	0.27%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.944e-01	1.0000	143.0	1.14%	407.0	1.14%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-6.941e-01	1.0000	6394.0	50.92%	18242.2	50.91%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-6.931e-01	1.0000	157.0	1.25%	447.8	1.25%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.912e-01	1.0000	62.0	0.49%	176.8	0.49%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.811e-01	1.0000	408.0	3.25%	1164.6	3.25%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-6.804e-01	1.0000	78.0	0.62%	222.3	0.62%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-6.732e-01	1.0000	584.0	4.65%	1667.4	4.65%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.678e-01	1.0000	123.0	0.98%	351.6	0.98%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.518e-01	1.0000	26.0	0.21%	74.4	0.21%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-6.506e-01	1.0000	1117.0	8.89%	3191.8	8.91%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-6.446e-01	1.0000	101.0	0.80%	289.9	0.81%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.432e-01	1.0000	159.0	1.27%	455.8	1.27%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-6.356e-01	1.0000	1621.0	12.91%	4632.3	12.93%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-6.255e-01	1.0000	1970.0	15.69%	5630.2	15.71%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-6.226e-01	1.0000	1523.0	12.13%	4354.0	12.15%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-6.190e-01	1.0000	448.0	3.57%	1283.8	3.58%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-6.109e-01	1.0000	807.0	6.43%	2310.0	6.45%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-6.029e-01	1.0000	181.0	1.44%	520.5	1.45%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-6.022e-01	1.0000	6.0	0.05%	17.9	0.05%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.982e-01	1.0000	76.0	0.61%	219.7	0.61%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.967e-01	1.0000	683.0	5.44%	1957.6	5.46%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-5.926e-01	1.0000	550.0	4.38%	1577.3	4.40%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.877e-01	1.0000	19.0	0.15%	55.3	0.15%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.875e-01	1.0000	87.0	0.69%	251.9	0.70%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.851e-01	1.0000	670.0	5.34%	1921.9	5.36%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-5.811e-01	1.0000	1516.0	12.07%	4340.3	12.11%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.808e-01	1.0000	105.0	0.84%	303.5	0.85%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-5.796e-01	1.0000	1144.0	9.11%	3277.5	9.15%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-5.786e-01	1.0000	768.0	6.12%	2203.0	6.15%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-5.757e-01	1.0000	612.0	4.87%	1756.3	4.90%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.706e-01	1.0000	2416.0	19.24%	6913.1	19.29%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-5.645e-01	1.0000	12.0	0.10%	35.2	0.10%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-5.591e-01	1.0000	573.0	4.56%	1646.5	4.60%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.583e-01	1.0000	137.0	1.09%	396.0	1.11%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.576e-01	1.0000	25.0	0.20%	73.3	0.20%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-5.567e-01	1.0000	2175.0	17.32%	6227.5	17.38%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-5.537e-01	1.0000	202.0	1.61%	583.5	1.63%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.532e-01	1.0000	26.0	0.21%	76.2	0.21%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.530e-01	1.0000	131.0	1.04%	379.1	1.06%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-5.502e-01	1.0000	1079.0	8.59%	3095.8	8.64%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.448e-01	1.0000	28.0	0.22%	82.9	0.23%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.271e-01	1.0000	462.0	3.68%	1331.7	3.72%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-5.268e-01	1.0000	63.0	0.50%	185.0	0.52%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-5.263e-01	1.0000	142.0	1.13%	412.9	1.15%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.255e-01	1.0000	1534.0	12.22%	4400.9	12.28%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-5.192e-01	1.0000	744.0	5.92%	2140.8	5.97%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-5.189e-01	1.0000	862.0	6.86%	2478.3	6.92%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.157e-01	1.0000	36.0	0.29%	106.8	0.30%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.157e-01	1.0000	36.0	0.29%	106.8	0.30%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.122e-01	1.0000	1276.0	10.16%	3664.2	10.23%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-5.120e-01	1.0000	12539.0	99.85%	35778.6	99.85%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-5.091e-01	1.0000	49.0	0.39%	144.1	0.40%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.065e-01	1.0000	298.0	2.37%	862.9	2.41%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-5.056e-01	1.0000	338.0	2.69%	977.7	2.73%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-5.054e-01	1.0000	629.0	5.01%	1812.3	5.06%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-4.881e-01	1.0000	5228.0	41.63%	14961.1	41.75%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.866e-01	1.0000	561.0	4.47%	1619.5	4.52%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-4.806e-01	1.0000	128.0	1.02%	374.3	1.04%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-4.790e-01	1.0000	91.0	0.72%	267.2	0.75%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-4.789e-01	1.0000	283.0	2.25%	821.9	2.29%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-4.788e-01	1.0000	878.0	6.99%	2529.4	7.06%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-4.786e-01	1.0000	388.0	3.09%	1123.2	3.13%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.779e-01	1.0000	864.0	6.88%	2489.1	6.95%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.767e-01	1.0000	61.0	0.49%	180.6	0.50%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-4.633e-01	1.0000	1420.0	11.31%	4084.2	11.40%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-4.629e-01	1.0000	226.0	1.80%	658.7	1.84%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.628e-01	1.0000	1900.0	15.13%	5458.4	15.23%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-4.599e-01	1.0000	410.0	3.26%	1188.8	3.32%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.558e-01	1.0000	213.0	1.70%	621.4	1.73%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-4.535e-01	1.0000	2366.0	18.84%	6793.0	18.96%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-4.515e-01	1.0000	944.0	7.52%	2722.4	7.60%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-4.476e-01	1.0000	508.0	4.05%	1471.0	4.11%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.451e-01	1.0000	97.0	0.77%	286.6	0.80%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.389e-01	1.0000	17.0	0.14%	52.3	0.15%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-4.366e-01	1.0000	769.0	6.12%	2222.6	6.20%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-4.225e-01	1.0000	30.0	0.24%	91.4	0.26%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-4.213e-01	1.0000	580.0	4.62%	1681.6	4.69%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-4.169e-01	1.0000	5.0	0.04%	16.1	0.04%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.111e-01	1.0000	484.0	3.85%	1406.3	3.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.103e-01	1.0000	623.0	4.96%	1806.0	5.04%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-4.060e-01	1.0000	2973.0	23.67%	8540.5	23.84%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.023e-01	1.0000	947.0	7.54%	2738.5	7.64%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.000e-01	1.0000	690.0	5.49%	2000.1	5.58%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-3.978e-01	1.0000	1493.0	11.89%	4305.5	12.02%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-3.976e-01	1.0000	1650.0	13.14%	4755.6	13.27%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.957e-01	1.0000	115.0	0.92%	341.3	0.95%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-3.935e-01	1.0000	1989.0	15.84%	5727.3	15.98%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.903e-01	1.0000	212.0	1.69%	623.7	1.74%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-3.842e-01	1.0000	373.0	2.97%	1090.0	3.04%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-3.827e-01	1.0000	100.0	0.80%	298.8	0.83%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-3.804e-01	1.0000	332.0	2.64%	971.3	2.71%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.777e-01	1.0000	9.0	0.07%	29.2	0.08%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-3.774e-01	1.0000	748.0	5.96%	2170.5	6.06%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-3.694e-01	1.0000	49.0	0.39%	149.4	0.42%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.655e-01	1.0000	181.0	1.44%	535.7	1.50%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.634e-01	1.0000	716.0	5.70%	2080.9	5.81%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-3.568e-01	1.0000	814.0	6.48%	2363.3	6.60%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.567e-01	1.0000	33.0	0.26%	103.0	0.29%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-3.566e-01	1.0000	20.0	0.16%	63.9	0.18%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-3.566e-01	1.0000	951.0	7.57%	2757.9	7.70%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.556e-01	1.0000	1852.0	14.75%	5343.5	14.91%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-3.516e-01	1.0000	16.0	0.13%	51.9	0.14%
 Ik-1	NHTTGGGAATRCC	1e0	-3.505e-01	1.0000	12558.0	100.00%	35831.5	100.00%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-3.481e-01	1.0000	427.0	3.40%	1249.1	3.49%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.392e-01	1.0000	813.0	6.47%	2363.8	6.60%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-3.350e-01	1.0000	1600.0	12.74%	4625.2	12.91%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-3.338e-01	1.0000	461.0	3.67%	1349.3	3.77%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.284e-01	1.0000	157.0	1.25%	468.4	1.31%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.257e-01	1.0000	1670.0	13.30%	4828.1	13.47%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.231e-01	1.0000	21.0	0.17%	67.1	0.19%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-3.149e-01	1.0000	145.0	1.15%	435.0	1.21%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.148e-01	1.0000	158.0	1.26%	472.6	1.32%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-3.106e-01	1.0000	3804.0	30.29%	10944.4	30.54%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-3.093e-01	1.0000	1215.0	9.68%	3525.8	9.84%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.087e-01	1.0000	177.0	1.41%	528.4	1.47%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-3.061e-01	1.0000	238.0	1.90%	706.7	1.97%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.055e-01	1.0000	803.0	6.39%	2340.9	6.53%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-3.041e-01	1.0000	659.0	5.25%	1925.0	5.37%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.034e-01	1.0000	36.0	0.29%	113.2	0.32%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-3.013e-01	1.0000	1999.0	15.92%	5778.9	16.13%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.012e-01	1.0000	1116.0	8.89%	3242.6	9.05%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.009e-01	1.0000	160.0	1.27%	479.4	1.34%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.004e-01	1.0000	12546.0	99.90%	35801.1	99.92%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.979e-01	1.0000	213.0	1.70%	634.7	1.77%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-2.948e-01	1.0000	167.0	1.33%	500.9	1.40%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-2.944e-01	1.0000	2547.0	20.28%	7351.3	20.52%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-2.937e-01	1.0000	3471.0	27.64%	9997.7	27.90%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.934e-01	1.0000	701.0	5.58%	2049.0	5.72%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.933e-01	1.0000	141.0	1.12%	424.2	1.18%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-2.901e-01	1.0000	72.0	0.57%	221.2	0.62%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.868e-01	1.0000	202.0	1.61%	603.3	1.68%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.864e-01	1.0000	250.0	1.99%	743.4	2.07%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.758e-01	1.0000	95.0	0.76%	290.4	0.81%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.758e-01	1.0000	95.0	0.76%	290.4	0.81%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.709e-01	1.0000	122.0	0.97%	370.0	1.03%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-2.706e-01	1.0000	971.0	7.73%	2831.4	7.90%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-2.690e-01	1.0000	2229.0	17.75%	6448.0	18.00%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-2.648e-01	1.0000	205.0	1.63%	614.4	1.71%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.602e-01	1.0000	40.0	0.32%	127.2	0.36%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.598e-01	1.0000	39.0	0.31%	124.6	0.35%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-2.530e-01	1.0000	918.0	7.31%	2682.0	7.49%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e0	-2.514e-01	1.0000	114.0	0.91%	348.2	0.97%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.503e-01	1.0000	682.0	5.43%	2001.8	5.59%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.423e-01	1.0000	75.0	0.60%	233.0	0.65%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-2.383e-01	1.0000	676.0	5.38%	1986.5	5.54%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.294e-01	1.0000	64.0	0.51%	201.4	0.56%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.282e-01	1.0000	114.0	0.91%	350.9	0.98%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.280e-01	1.0000	12.0	0.10%	42.8	0.12%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-2.255e-01	1.0000	965.0	7.68%	2824.1	7.88%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.248e-01	1.0000	44.0	0.35%	141.1	0.39%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-2.243e-01	1.0000	778.0	6.20%	2284.8	6.38%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.234e-01	1.0000	934.0	7.44%	2735.7	7.64%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.221e-01	1.0000	404.0	3.22%	1200.0	3.35%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-2.195e-01	1.0000	495.0	3.94%	1465.8	4.09%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-2.185e-01	1.0000	1417.0	11.28%	4129.6	11.53%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-2.166e-01	1.0000	1554.0	12.37%	4524.1	12.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.154e-01	1.0000	298.0	2.37%	892.5	2.49%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-2.078e-01	1.0000	350.0	2.79%	1045.0	2.92%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.078e-01	1.0000	161.0	1.28%	491.1	1.37%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-1.994e-01	1.0000	232.0	1.85%	701.9	1.96%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.976e-01	1.0000	266.0	2.12%	801.2	2.24%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.970e-01	1.0000	51.0	0.41%	164.9	0.46%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.957e-01	1.0000	935.0	7.45%	2745.8	7.66%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.953e-01	1.0000	48.0	0.38%	155.2	0.43%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.951e-01	1.0000	2.0	0.02%	9.6	0.03%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.942e-01	1.0000	16.0	0.13%	56.8	0.16%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.899e-01	1.0000	770.0	6.13%	2269.0	6.33%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.875e-01	1.0000	274.0	2.18%	826.2	2.31%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.860e-01	1.0000	1024.0	8.15%	3005.3	8.39%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.827e-01	1.0000	1132.0	9.01%	3318.7	9.26%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.788e-01	1.0000	214.0	1.70%	651.3	1.82%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.778e-01	1.0000	176.0	1.40%	539.9	1.51%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-1.735e-01	1.0000	743.0	5.92%	2195.6	6.13%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.731e-01	1.0000	1240.0	9.87%	3633.7	10.14%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.729e-01	1.0000	56.0	0.45%	182.0	0.51%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.691e-01	1.0000	258.0	2.05%	782.6	2.18%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.602e-01	1.0000	110.0	0.88%	345.4	0.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.600e-01	1.0000	463.0	3.69%	1384.5	3.86%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.589e-01	1.0000	81.0	0.65%	258.8	0.72%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.586e-01	1.0000	349.0	2.78%	1051.7	2.94%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.579e-01	1.0000	619.0	4.93%	1840.0	5.14%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.547e-01	1.0000	538.0	4.28%	1604.5	4.48%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.528e-01	1.0000	290.0	2.31%	879.4	2.45%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.515e-01	1.0000	1309.0	10.42%	3840.1	10.72%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.508e-01	1.0000	2615.0	20.82%	7601.2	21.21%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.458e-01	1.0000	51.0	0.41%	168.4	0.47%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-1.454e-01	1.0000	1119.0	8.91%	3293.4	9.19%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.427e-01	1.0000	946.0	7.53%	2793.2	7.80%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.424e-01	1.0000	3.0	0.02%	14.4	0.04%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.413e-01	1.0000	2132.0	16.98%	6217.8	17.35%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.392e-01	1.0000	644.0	5.13%	1917.6	5.35%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.367e-01	1.0000	1026.0	8.17%	3027.3	8.45%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.359e-01	1.0000	347.0	2.76%	1050.9	2.93%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.339e-01	1.0000	90.0	0.72%	288.9	0.81%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-1.322e-01	1.0000	3951.0	31.46%	11444.7	31.94%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.262e-01	1.0000	768.0	6.12%	2282.6	6.37%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.255e-01	1.0000	999.0	7.96%	2953.9	8.24%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.232e-01	1.0000	521.0	4.15%	1563.3	4.36%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-1.219e-01	1.0000	385.0	3.07%	1165.6	3.25%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.201e-01	1.0000	408.0	3.25%	1233.9	3.44%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.190e-01	1.0000	185.0	1.47%	575.7	1.61%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.179e-01	1.0000	2301.0	18.32%	6716.2	18.74%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.179e-01	1.0000	1090.0	8.68%	3220.4	8.99%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.176e-01	1.0000	813.0	6.47%	2416.5	6.74%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.115e-01	1.0000	997.0	7.94%	2953.1	8.24%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.108e-01	1.0000	153.0	1.22%	481.3	1.34%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.097e-01	1.0000	38.0	0.30%	131.3	0.37%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.093e-01	1.0000	2169.0	17.27%	6341.0	17.70%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-1.091e-01	1.0000	2980.0	23.73%	8674.8	24.21%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.089e-01	1.0000	26.0	0.21%	93.7	0.26%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.069e-01	1.0000	3602.0	28.68%	10461.1	29.20%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.046e-01	1.0000	326.0	2.60%	996.8	2.78%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.045e-01	1.0000	11.0	0.09%	44.4	0.12%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.012e-01	1.0000	303.0	2.41%	929.7	2.59%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.011e-01	1.0000	5.0	0.04%	23.9	0.07%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-9.878e-02	1.0000	318.0	2.53%	974.4	2.72%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-9.553e-02	1.0000	2835.0	22.58%	8267.8	23.07%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.518e-02	1.0000	145.0	1.15%	460.5	1.29%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-9.427e-02	1.0000	1060.0	8.44%	3144.2	8.77%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-9.350e-02	1.0000	1373.0	10.93%	4052.7	11.31%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.094e-02	1.0000	165.0	1.31%	521.4	1.46%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-8.990e-02	1.0000	2692.0	21.44%	7860.0	21.94%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-8.743e-02	1.0000	117.0	0.93%	377.5	1.05%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-8.649e-02	1.0000	863.0	6.87%	2575.7	7.19%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.504e-02	1.0000	508.0	4.05%	1538.4	4.29%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-8.337e-02	1.0000	1265.0	10.07%	3745.3	10.45%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-8.299e-02	1.0000	1530.0	12.18%	4513.7	12.60%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-7.981e-02	1.0000	64.0	0.51%	216.8	0.61%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-7.825e-02	1.0000	1185.0	9.44%	3517.0	9.82%
SeqBias: CG bias	SSSSSSSSSS	1e0	-7.723e-02	1.0000	6502.0	51.78%	18781.9	52.42%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.658e-02	1.0000	139.0	1.11%	446.6	1.25%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-7.414e-02	1.0000	1085.0	8.64%	3229.0	9.01%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.378e-02	1.0000	369.0	2.94%	1133.4	3.16%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-7.359e-02	1.0000	1067.0	8.50%	3176.7	8.87%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-7.194e-02	1.0000	1111.0	8.85%	3305.7	9.23%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-7.150e-02	1.0000	1904.0	15.16%	5603.1	15.64%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.141e-02	1.0000	615.0	4.90%	1858.8	5.19%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.136e-02	1.0000	69.0	0.55%	233.8	0.65%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-6.912e-02	1.0000	556.0	4.43%	1686.5	4.71%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-6.832e-02	1.0000	196.0	1.56%	620.9	1.73%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-6.812e-02	1.0000	1458.0	11.61%	4315.3	12.04%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-6.812e-02	1.0000	2344.0	18.67%	6876.4	19.19%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.738e-02	1.0000	130.0	1.04%	421.8	1.18%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.716e-02	1.0000	955.0	7.60%	2854.4	7.97%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-6.579e-02	1.0000	728.0	5.80%	2192.1	6.12%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.491e-02	1.0000	59.0	0.47%	203.7	0.57%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.482e-02	1.0000	238.0	1.90%	747.5	2.09%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.408e-02	1.0000	97.0	0.77%	321.6	0.90%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.185e-02	1.0000	760.0	6.05%	2288.1	6.39%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-6.093e-02	1.0000	136.0	1.08%	441.1	1.23%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-5.963e-02	1.0000	779.0	6.20%	2345.9	6.55%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-5.941e-02	1.0000	740.0	5.89%	2232.0	6.23%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.851e-02	1.0000	1825.0	14.53%	5386.2	15.03%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-5.775e-02	1.0000	1980.0	15.77%	5835.4	16.29%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-5.518e-02	1.0000	4858.0	38.68%	14111.3	39.38%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.278e-02	1.0000	111.0	0.88%	367.5	1.03%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.188e-02	1.0000	238.0	1.90%	752.6	2.10%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-5.178e-02	1.0000	363.0	2.89%	1125.4	3.14%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-4.668e-02	1.0000	301.0	2.40%	943.5	2.63%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-4.570e-02	1.0000	3844.0	30.61%	11218.8	31.31%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.530e-02	1.0000	264.0	2.10%	833.6	2.33%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.506e-02	1.0000	802.0	6.39%	2423.1	6.76%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-4.047e-02	1.0000	2400.0	19.11%	7069.7	19.73%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-4.017e-02	1.0000	1061.0	8.45%	3185.2	8.89%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-3.977e-02	1.0000	2978.0	23.71%	8737.5	24.39%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.962e-02	1.0000	45.0	0.36%	164.4	0.46%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-3.803e-02	1.0000	520.0	4.14%	1599.7	4.46%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-3.800e-02	1.0000	865.0	6.89%	2615.0	7.30%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.692e-02	1.0000	185.0	1.47%	599.0	1.67%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-3.472e-02	1.0000	10.0	0.08%	47.2	0.13%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.342e-02	1.0000	948.0	7.55%	2862.6	7.99%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-3.182e-02	1.0000	306.0	2.44%	967.5	2.70%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.148e-02	1.0000	348.0	2.77%	1093.1	3.05%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.084e-02	1.0000	110.0	0.88%	372.2	1.04%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-3.009e-02	1.0000	127.0	1.01%	425.9	1.19%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.888e-02	1.0000	13.0	0.10%	59.1	0.16%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.885e-02	1.0000	883.0	7.03%	2677.9	7.47%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.881e-02	1.0000	2820.0	22.46%	8301.1	23.17%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.662e-02	1.0000	29.0	0.23%	115.0	0.32%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.623e-02	1.0000	126.0	1.00%	424.4	1.18%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.531e-02	1.0000	3133.0	24.95%	9211.9	25.71%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-2.486e-02	1.0000	165.0	1.31%	545.3	1.52%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-2.380e-02	1.0000	1472.0	11.72%	4406.5	12.30%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.359e-02	1.0000	89.0	0.71%	310.2	0.87%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.342e-02	1.0000	129.0	1.03%	435.2	1.21%
Tal1	CATCTG	1e0	-2.338e-02	1.0000	984.0	7.84%	2981.9	8.32%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-2.336e-02	1.0000	95.0	0.76%	329.6	0.92%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.250e-02	1.0000	43.0	0.34%	163.2	0.46%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.178e-02	1.0000	238.0	1.90%	770.0	2.15%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-2.175e-02	1.0000	3846.0	30.63%	11272.9	31.46%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-2.132e-02	1.0000	2883.0	22.96%	8500.0	23.72%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-2.067e-02	1.0000	694.0	5.53%	2132.7	5.95%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-2.047e-02	1.0000	24.0	0.19%	100.9	0.28%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-2.014e-02	1.0000	562.0	4.48%	1742.2	4.86%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-2.010e-02	1.0000	811.0	6.46%	2478.5	6.92%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.942e-02	1.0000	99.0	0.79%	344.1	0.96%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.874e-02	1.0000	622.0	4.95%	1922.4	5.37%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.700e-02	1.0000	1764.0	14.05%	5271.7	14.71%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.698e-02	1.0000	803.0	6.39%	2460.2	6.87%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-1.572e-02	1.0000	3005.0	23.93%	8869.7	24.75%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.565e-02	1.0000	524.0	4.17%	1636.0	4.57%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.561e-02	1.0000	1474.0	11.74%	4430.4	12.36%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.514e-02	1.0000	597.0	4.75%	1854.8	5.18%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.501e-02	1.0000	1.0	0.01%	12.5	0.03%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.433e-02	1.0000	485.0	3.86%	1522.3	4.25%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-1.361e-02	1.0000	630.0	5.02%	1955.2	5.46%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.350e-02	1.0000	203.0	1.62%	672.9	1.88%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.349e-02	1.0000	568.0	4.52%	1771.8	4.94%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.347e-02	1.0000	1197.0	9.53%	3626.7	10.12%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.341e-02	1.0000	377.0	3.00%	1200.4	3.35%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.307e-02	1.0000	335.0	2.67%	1074.0	3.00%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.267e-02	1.0000	718.0	5.72%	2218.1	6.19%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.258e-02	1.0000	1977.0	15.74%	5904.3	16.48%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-1.255e-02	1.0000	2586.0	20.59%	7670.6	21.41%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.159e-02	1.0000	43.0	0.34%	169.1	0.47%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.049e-02	1.0000	312.0	2.48%	1009.5	2.82%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.029e-02	1.0000	722.0	5.75%	2236.2	6.24%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-9.743e-03	1.0000	328.0	2.61%	1059.3	2.96%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.027e-03	1.0000	746.0	5.94%	2311.1	6.45%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-8.886e-03	1.0000	1262.0	10.05%	3832.3	10.70%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-8.549e-03	1.0000	207.0	1.65%	692.4	1.93%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-8.437e-03	1.0000	102.0	0.81%	364.1	1.02%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-8.403e-03	1.0000	1052.0	8.38%	3217.7	8.98%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-7.762e-03	1.0000	270.0	2.15%	887.8	2.48%
SeqBias: TA-repeat	TATATATATA	1e0	-7.571e-03	1.0000	3414.0	27.19%	10088.3	28.15%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-7.142e-03	1.0000	1733.0	13.80%	5218.3	14.56%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-6.828e-03	1.0000	455.0	3.62%	1450.3	4.05%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-6.410e-03	1.0000	1274.0	10.14%	3879.4	10.83%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.067e-03	1.0000	511.0	4.07%	1621.7	4.53%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-5.989e-03	1.0000	1500.0	11.94%	4544.2	12.68%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-5.498e-03	1.0000	3356.0	26.72%	9937.7	27.73%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-5.103e-03	1.0000	4616.0	36.76%	13567.5	37.86%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-5.054e-03	1.0000	2996.0	23.86%	8901.2	24.84%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.037e-03	1.0000	914.0	7.28%	2826.3	7.89%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-4.891e-03	1.0000	3121.0	24.85%	9264.7	25.86%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-4.867e-03	1.0000	75.0	0.60%	283.9	0.79%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-4.853e-03	1.0000	109.0	0.87%	393.5	1.10%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-4.574e-03	1.0000	1486.0	11.83%	4513.8	12.60%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.364e-03	1.0000	253.0	2.01%	845.8	2.36%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-4.361e-03	1.0000	50.0	0.40%	201.9	0.56%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.336e-03	1.0000	78.0	0.62%	294.8	0.82%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-3.878e-03	1.0000	396.0	3.15%	1284.6	3.59%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.589e-03	1.0000	121.0	0.96%	435.3	1.21%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-3.584e-03	1.0000	673.0	5.36%	2119.4	5.91%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-3.558e-03	1.0000	208.0	1.66%	709.8	1.98%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-3.445e-03	1.0000	2665.0	21.22%	7960.9	22.22%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-3.410e-03	1.0000	1354.0	10.78%	4136.5	11.54%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-3.320e-03	1.0000	226.0	1.80%	766.1	2.14%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-3.242e-03	1.0000	1150.0	9.16%	3537.9	9.87%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-2.737e-03	1.0000	875.0	6.97%	2728.1	7.61%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.511e-03	1.0000	809.0	6.44%	2534.5	7.07%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-2.369e-03	1.0000	718.0	5.72%	2264.9	6.32%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.282e-03	1.0000	945.0	7.53%	2941.9	8.21%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.237e-03	1.0000	2297.0	18.29%	6909.5	19.28%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.985e-03	1.0000	553.0	4.40%	1773.4	4.95%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.966e-03	1.0000	322.0	2.56%	1071.9	2.99%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.925e-03	1.0000	317.0	2.52%	1056.6	2.95%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.811e-03	1.0000	441.0	3.51%	1436.9	4.01%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.771e-03	1.0000	2208.0	17.58%	6659.7	18.59%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.654e-03	1.0000	108.0	0.86%	402.5	1.12%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.608e-03	1.0000	210.0	1.67%	728.0	2.03%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-1.585e-03	1.0000	644.0	5.13%	2052.2	5.73%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.407e-03	1.0000	43.0	0.34%	186.2	0.52%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.351e-03	1.0000	9.0	0.07%	59.4	0.17%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.305e-03	1.0000	298.0	2.37%	1004.9	2.80%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.298e-03	1.0000	1347.0	10.73%	4147.3	11.57%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-1.287e-03	1.0000	729.0	5.81%	2312.9	6.46%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.254e-03	1.0000	291.0	2.32%	983.6	2.75%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.247e-03	1.0000	598.0	4.76%	1919.8	5.36%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.230e-03	1.0000	45.0	0.36%	194.9	0.54%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.198e-03	1.0000	1296.0	10.32%	3999.1	11.16%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-1.190e-03	1.0000	2523.0	20.09%	7592.1	21.19%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.101e-03	1.0000	426.0	3.39%	1400.4	3.91%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.098e-03	1.0000	1391.0	11.08%	4282.7	11.95%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.074e-03	1.0000	219.0	1.74%	761.3	2.12%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-9.290e-04	1.0000	375.0	2.99%	1247.0	3.48%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-8.970e-04	1.0000	3216.0	25.61%	9615.6	26.84%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.110e-04	1.0000	774.0	6.16%	2458.5	6.86%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-7.590e-04	1.0000	1704.0	13.57%	5215.4	14.56%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.010e-04	1.0000	280.0	2.23%	958.7	2.68%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-6.860e-04	1.0000	772.0	6.15%	2456.5	6.86%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-5.990e-04	1.0000	998.0	7.95%	3135.4	8.75%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-5.830e-04	1.0000	623.0	4.96%	2011.5	5.61%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.600e-04	1.0000	69.0	0.55%	283.4	0.79%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.670e-04	1.0000	256.0	2.04%	889.7	2.48%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.060e-04	1.0000	751.0	5.98%	2405.7	6.71%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-3.660e-04	1.0000	546.0	4.35%	1787.2	4.99%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-3.170e-04	1.0000	418.0	3.33%	1398.7	3.90%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-3.150e-04	1.0000	381.0	3.03%	1284.0	3.58%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-3.150e-04	1.0000	1.0	0.01%	23.5	0.07%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-2.800e-04	1.0000	614.0	4.89%	1999.7	5.58%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-2.760e-04	1.0000	1778.0	14.16%	5465.4	15.25%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.530e-04	1.0000	1236.0	9.84%	3866.8	10.79%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.510e-04	1.0000	363.0	2.89%	1232.9	3.44%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.410e-04	1.0000	112.0	0.89%	435.1	1.21%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.310e-04	1.0000	194.0	1.54%	702.6	1.96%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-2.180e-04	1.0000	1982.0	15.78%	6072.8	16.95%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-2.150e-04	1.0000	1397.0	11.12%	4348.9	12.14%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-2.100e-04	1.0000	1618.0	12.88%	5002.5	13.96%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.070e-04	1.0000	280.0	2.23%	976.7	2.73%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-2.020e-04	1.0000	538.0	4.28%	1774.7	4.95%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.930e-04	1.0000	523.0	4.16%	1729.6	4.83%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.730e-04	1.0000	3006.0	23.94%	9070.5	25.31%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.600e-04	1.0000	319.0	2.54%	1102.5	3.08%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.450e-04	1.0000	237.0	1.89%	845.1	2.36%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.410e-04	1.0000	1714.0	13.65%	5297.5	14.78%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.390e-04	1.0000	270.0	2.15%	950.2	2.65%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.360e-04	1.0000	227.0	1.81%	814.4	2.27%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-1.300e-04	1.0000	1294.0	10.30%	4056.7	11.32%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.200e-04	1.0000	2278.0	18.14%	6959.0	19.42%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-9.800e-05	1.0000	1930.0	15.37%	5944.6	16.59%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-8.600e-05	1.0000	490.0	3.90%	1642.4	4.58%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.500e-05	1.0000	686.0	5.46%	2244.9	6.27%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.200e-05	1.0000	528.0	4.20%	1762.9	4.92%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-7.100e-05	1.0000	1323.0	10.54%	4159.0	11.61%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-6.700e-05	1.0000	914.0	7.28%	2936.4	8.19%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-5.500e-05	1.0000	316.0	2.52%	1108.2	3.09%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.900e-05	1.0000	363.0	2.89%	1257.6	3.51%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-3.300e-05	1.0000	7.0	0.06%	65.8	0.18%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-2.900e-05	1.0000	1873.0	14.91%	5812.9	16.22%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.800e-05	1.0000	329.0	2.62%	1158.9	3.23%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.700e-05	1.0000	703.0	5.60%	2315.1	6.46%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.700e-05	1.0000	1617.0	12.88%	5056.7	14.11%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.700e-05	1.0000	419.0	3.34%	1441.8	4.02%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-2.500e-05	1.0000	312.0	2.48%	1106.0	3.09%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.400e-05	1.0000	1523.0	12.13%	4780.9	13.34%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.400e-05	1.0000	1234.0	9.83%	3919.1	10.94%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-1.800e-05	1.0000	460.0	3.66%	1575.5	4.40%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.600e-05	1.0000	455.0	3.62%	1561.0	4.36%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.300e-05	1.0000	1331.0	10.60%	4223.3	11.79%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.300e-05	1.0000	1303.0	10.38%	4140.5	11.56%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-1.300e-05	1.0000	757.0	6.03%	2494.4	6.96%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-9.000e-06	1.0000	1809.0	14.41%	5653.8	15.78%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-9.000e-06	1.0000	774.0	6.16%	2553.6	7.13%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-6.000e-06	1.0000	3074.0	24.48%	9382.8	26.19%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-5.000e-06	1.0000	465.0	3.70%	1609.6	4.49%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-5.000e-06	1.0000	1044.0	8.31%	3385.1	9.45%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.000e-06	1.0000	246.0	1.96%	916.1	2.56%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.000e-06	1.0000	446.0	3.55%	1552.5	4.33%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.000e-06	1.0000	2050.0	16.32%	6387.4	17.83%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-3.000e-06	1.0000	484.0	3.85%	1675.7	4.68%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-3.000e-06	1.0000	2495.0	19.87%	7708.6	21.51%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.000e-06	1.0000	1177.0	9.37%	3797.9	10.60%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-3.000e-06	1.0000	432.0	3.44%	1516.4	4.23%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.000e-06	1.0000	882.0	7.02%	2906.2	8.11%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.000e-06	1.0000	595.0	4.74%	2034.2	5.68%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.000e-06	1.0000	1131.0	9.01%	3673.9	10.25%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-1.000e-06	1.0000	1569.0	12.49%	4991.0	13.93%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.000e-06	1.0000	1304.0	10.38%	4198.2	11.72%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.000e-06	1.0000	696.0	5.54%	2353.9	6.57%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-1.000e-06	1.0000	2009.0	16.00%	6308.8	17.61%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.000e-06	1.0000	407.0	3.24%	1454.4	4.06%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.000e-06	1.0000	471.0	3.75%	1657.7	4.63%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.000e-06	1.0000	471.0	3.75%	1657.7	4.63%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-1.000e-06	1.0000	3096.0	24.65%	9510.7	26.54%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.000e-06	1.0000	926.0	7.37%	3068.8	8.56%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.000e-06	1.0000	3440.0	27.39%	10521.4	29.36%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-0.000e+00	1.0000	1048.0	8.35%	3443.0	9.61%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-0.000e+00	1.0000	999.0	7.96%	3294.4	9.19%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-0.000e+00	1.0000	536.0	4.27%	1868.3	5.21%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-0.000e+00	1.0000	1549.0	12.33%	4955.0	13.83%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-0.000e+00	1.0000	504.0	4.01%	1770.6	4.94%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-0.000e+00	1.0000	2443.0	19.45%	7613.8	21.25%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-0.000e+00	1.0000	1128.0	8.98%	3692.2	10.30%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-0.000e+00	1.0000	597.0	4.75%	2065.7	5.76%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-0.000e+00	1.0000	106.0	0.84%	473.1	1.32%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-0.000e+00	1.0000	590.0	4.70%	2045.0	5.71%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-0.000e+00	1.0000	1222.0	9.73%	3985.8	11.12%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-0.000e+00	1.0000	875.0	6.97%	2935.1	8.19%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-0.000e+00	1.0000	798.0	6.35%	2700.0	7.54%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-0.000e+00	1.0000	4166.0	33.17%	12670.5	35.36%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-0.000e+00	1.0000	492.0	3.92%	1747.8	4.88%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-0.000e+00	1.0000	391.0	3.11%	1427.2	3.98%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	116.0	0.92%	516.0	1.44%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	931.0	7.41%	3120.5	8.71%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	884.0	7.04%	2981.6	8.32%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-0.000e+00	1.0000	409.0	3.26%	1495.1	4.17%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-0.000e+00	1.0000	1267.0	10.09%	4160.5	11.61%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-0.000e+00	1.0000	1066.0	8.49%	3550.3	9.91%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-0.000e+00	1.0000	579.0	4.61%	2048.0	5.72%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-0.000e+00	1.0000	591.0	4.71%	2088.0	5.83%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-0.000e+00	1.0000	847.0	6.74%	2886.2	8.05%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	1828.0	14.56%	5861.4	16.36%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-0.000e+00	1.0000	738.0	5.88%	2551.6	7.12%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	717.0	5.71%	2488.2	6.94%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	893.0	7.11%	3035.1	8.47%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-0.000e+00	1.0000	543.0	4.32%	1944.1	5.43%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-0.000e+00	1.0000	2121.0	16.89%	6755.6	18.85%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	676.0	5.38%	2381.0	6.65%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	2697.0	21.48%	8487.0	23.69%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-0.000e+00	1.0000	456.0	3.63%	1687.3	4.71%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-0.000e+00	1.0000	812.0	6.47%	2821.9	7.88%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-0.000e+00	1.0000	587.0	4.67%	2123.5	5.93%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-0.000e+00	1.0000	1714.0	13.65%	5605.1	15.64%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-0.000e+00	1.0000	743.0	5.92%	2657.4	7.42%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-0.000e+00	1.0000	502.0	4.00%	1888.2	5.27%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-0.000e+00	1.0000	389.0	3.10%	1528.9	4.27%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-0.000e+00	1.0000	1594.0	12.69%	5307.3	14.81%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-0.000e+00	1.0000	1067.0	8.50%	3739.0	10.43%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-0.000e+00	1.0000	570.0	4.54%	2169.1	6.05%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	8.5	0.02%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	0.000e+00	1.0000	505.0	4.02%	2106.8	5.88%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	0.000e+00	1.0000	2245.0	17.88%	7778.7	21.71%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	0.000e+00	1.0000	2290.0	18.24%	7960.2	22.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.8	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	2.9	0.01%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	0.000e+00	1.0000	2965.0	23.61%	9860.3	27.52%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%