Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 12556)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 35843)	% of Background Sequences with Motif
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-124	-2.859e+02	0.0000	1808.0	14.40%	2885.4	8.05%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-103	-2.382e+02	0.0000	924.0	7.36%	1200.8	3.35%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-95	-2.201e+02	0.0000	2348.0	18.70%	4377.6	12.22%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-53	-1.231e+02	0.0000	4116.0	32.78%	9512.3	26.54%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-42	-9.777e+01	0.0000	539.0	4.29%	806.3	2.25%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-39	-9.192e+01	0.0000	4023.0	32.04%	9561.8	26.68%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-35	-8.085e+01	0.0000	2273.0	18.10%	5050.7	14.09%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-33	-7.633e+01	0.0000	1925.0	15.33%	4199.0	11.72%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-30	-7.051e+01	0.0000	2820.0	22.46%	6573.5	18.34%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-27	-6.333e+01	0.0000	2716.0	21.63%	6374.3	17.79%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-25	-5.961e+01	0.0000	19.0	0.15%	1.2	0.00%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-24	-5.574e+01	0.0000	1503.0	11.97%	3301.9	9.21%
SeqBias: CA-repeat	CACACACACA	1e-24	-5.571e+01	0.0000	5794.0	46.14%	14910.5	41.61%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-24	-5.533e+01	0.0000	6535.0	52.04%	17015.2	47.48%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-23	-5.438e+01	0.0000	1451.0	11.55%	3181.8	8.88%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-23	-5.438e+01	0.0000	1701.0	13.55%	3818.6	10.66%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-21	-5.043e+01	0.0000	4259.0	33.91%	10712.9	29.90%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-21	-5.035e+01	0.0000	1625.0	12.94%	3661.9	10.22%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-21	-5.008e+01	0.0000	3222.0	25.66%	7886.8	22.01%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-21	-4.945e+01	0.0000	5029.0	40.05%	12862.0	35.89%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-21	-4.868e+01	0.0000	1632.0	13.00%	3695.3	10.31%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-21	-4.862e+01	0.0000	1172.0	9.33%	2527.3	7.05%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-20	-4.785e+01	0.0000	1637.0	13.04%	3716.5	10.37%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-20	-4.735e+01	0.0000	890.0	7.09%	1839.5	5.13%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-20	-4.704e+01	0.0000	2454.0	19.54%	5866.7	16.37%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-20	-4.688e+01	0.0000	2666.0	21.23%	6433.4	17.95%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-20	-4.667e+01	0.0000	1984.0	15.80%	4631.0	12.92%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-19	-4.525e+01	0.0000	1785.0	14.21%	4126.8	11.52%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-19	-4.413e+01	0.0000	513.0	4.09%	960.7	2.68%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-18	-4.266e+01	0.0000	1876.0	14.94%	4392.1	12.26%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-18	-4.227e+01	0.0000	779.0	6.20%	1605.0	4.48%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-18	-4.208e+01	0.0000	1057.0	8.42%	2293.8	6.40%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-18	-4.185e+01	0.0000	4220.0	33.60%	10737.4	29.96%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-17	-4.132e+01	0.0000	1444.0	11.50%	3284.3	9.17%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-17	-4.117e+01	0.0000	2747.0	21.87%	6726.3	18.77%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-17	-4.117e+01	0.0000	1380.0	10.99%	3121.7	8.71%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-17	-4.023e+01	0.0000	1812.0	14.43%	4252.9	11.87%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-17	-4.015e+01	0.0000	2515.0	20.03%	6117.5	17.07%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-17	-4.013e+01	0.0000	2244.0	17.87%	5394.1	15.05%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e-17	-3.953e+01	0.0000	391.0	3.11%	704.9	1.97%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-17	-3.940e+01	0.0000	975.0	7.76%	2110.8	5.89%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-17	-3.937e+01	0.0000	889.0	7.08%	1896.3	5.29%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-17	-3.935e+01	0.0000	874.0	6.96%	1859.5	5.19%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-17	-3.927e+01	0.0000	1401.0	11.16%	3194.9	8.92%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-16	-3.903e+01	0.0000	6465.0	51.48%	17091.8	47.70%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-16	-3.836e+01	0.0000	1057.0	8.42%	2325.2	6.49%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-16	-3.780e+01	0.0000	2357.0	18.77%	5726.2	15.98%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-16	-3.775e+01	0.0000	1585.0	12.62%	3687.6	10.29%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-16	-3.689e+01	0.0000	2008.0	15.99%	4809.1	13.42%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-15	-3.667e+01	0.0000	1497.0	11.92%	3470.6	9.68%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-15	-3.645e+01	0.0000	2396.0	19.08%	5849.6	16.32%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-15	-3.639e+01	0.0000	3678.0	29.29%	9333.9	26.05%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-15	-3.600e+01	0.0000	1301.0	10.36%	2970.2	8.29%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-15	-3.588e+01	0.0000	664.0	5.29%	1369.4	3.82%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-15	-3.559e+01	0.0000	1161.0	9.25%	2615.7	7.30%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-15	-3.538e+01	0.0000	523.0	4.16%	1033.5	2.88%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-15	-3.537e+01	0.0000	1006.0	8.01%	2223.0	6.20%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-15	-3.499e+01	0.0000	1181.0	9.40%	2672.4	7.46%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-15	-3.492e+01	0.0000	1721.0	13.70%	4076.0	11.37%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-15	-3.476e+01	0.0000	1440.0	11.47%	3343.6	9.33%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-15	-3.473e+01	0.0000	976.0	7.77%	2153.0	6.01%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-14	-3.416e+01	0.0000	1159.0	9.23%	2624.1	7.32%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-14	-3.397e+01	0.0000	1516.0	12.07%	3550.7	9.91%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-14	-3.329e+01	0.0000	2248.0	17.90%	5497.1	15.34%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-14	-3.296e+01	0.0000	1648.0	13.12%	3908.8	10.91%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-14	-3.265e+01	0.0000	4055.0	32.29%	10439.8	29.13%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-14	-3.231e+01	0.0000	875.0	6.97%	1920.1	5.36%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-13	-3.214e+01	0.0000	825.0	6.57%	1796.9	5.01%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-13	-3.209e+01	0.0000	538.0	4.28%	1090.5	3.04%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-13	-3.206e+01	0.0000	292.0	2.33%	516.8	1.44%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-13	-3.136e+01	0.0000	968.0	7.71%	2164.1	6.04%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-13	-3.040e+01	0.0000	984.0	7.84%	2214.3	6.18%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-12	-2.958e+01	0.0000	931.0	7.41%	2087.8	5.83%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-12	-2.924e+01	0.0000	6246.0	49.74%	16664.0	46.50%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-12	-2.913e+01	0.0000	912.0	7.26%	2043.6	5.70%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-12	-2.867e+01	0.0000	252.0	2.01%	442.7	1.24%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-12	-2.860e+01	0.0000	1270.0	10.11%	2971.8	8.29%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-11	-2.760e+01	0.0000	901.0	7.17%	2030.5	5.67%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-11	-2.714e+01	0.0000	1125.0	8.96%	2611.1	7.29%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-11	-2.674e+01	0.0000	257.0	2.05%	462.3	1.29%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-11	-2.588e+01	0.0000	1425.0	11.35%	3411.9	9.52%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-11	-2.570e+01	0.0000	478.0	3.81%	989.0	2.76%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-11	-2.559e+01	0.0000	2323.0	18.50%	5818.3	16.24%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-10	-2.433e+01	0.0000	232.0	1.85%	417.7	1.17%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e-9	-2.277e+01	0.0000	436.0	3.47%	908.1	2.53%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-9	-2.163e+01	0.0000	1271.0	10.12%	3062.8	8.55%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-9	-2.145e+01	0.0000	1980.0	15.77%	4961.6	13.85%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e-9	-2.133e+01	0.0000	2000.0	15.93%	5017.2	14.00%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-9	-2.115e+01	0.0000	103.0	0.82%	151.1	0.42%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-9	-2.073e+01	0.0000	1599.0	12.73%	3948.4	11.02%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-8	-2.059e+01	0.0000	600.0	4.78%	1335.0	3.73%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e-8	-2.024e+01	0.0000	1316.0	10.48%	3201.4	8.93%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e-8	-2.013e+01	0.0000	1121.0	8.93%	2688.0	7.50%
SeqBias: GA-repeat	GAGAGAGAGA	1e-8	-1.973e+01	0.0000	8506.0	67.73%	23387.9	65.27%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-8	-1.897e+01	0.0000	2386.0	19.00%	6111.9	17.06%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-8	-1.893e+01	0.0000	2974.0	23.68%	7727.7	21.56%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-8	-1.877e+01	0.0000	208.0	1.66%	390.8	1.09%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-7	-1.808e+01	0.0000	509.0	4.05%	1128.3	3.15%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-7	-1.726e+01	0.0000	239.0	1.90%	471.9	1.32%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-7	-1.667e+01	0.0000	1354.0	10.78%	3358.4	9.37%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-7	-1.655e+01	0.0000	2471.0	19.68%	6395.6	17.85%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-7	-1.648e+01	0.0000	1832.0	14.59%	4651.1	12.98%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-7	-1.642e+01	0.0000	477.0	3.80%	1063.5	2.97%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-7	-1.638e+01	0.0000	1455.0	11.59%	3634.4	10.14%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-6	-1.589e+01	0.0000	1233.0	9.82%	3047.7	8.50%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-6	-1.585e+01	0.0000	2407.0	19.17%	6236.0	17.40%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-6	-1.561e+01	0.0000	2460.0	19.59%	6386.7	17.82%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-6	-1.523e+01	0.0000	3818.0	30.40%	10163.0	28.36%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-6	-1.388e+01	0.0000	2202.0	17.53%	5717.7	15.96%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-5	-1.381e+01	0.0000	2114.0	16.83%	5477.4	15.29%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-5	-1.375e+01	0.0000	635.0	5.06%	1498.7	4.18%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-5	-1.315e+01	0.0000	327.0	2.60%	716.5	2.00%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e-5	-1.280e+01	0.0000	49.0	0.39%	67.2	0.19%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-5	-1.280e+01	0.0000	252.0	2.01%	533.2	1.49%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.221e+01	0.0000	1106.0	8.81%	2770.7	7.73%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-5	-1.205e+01	0.0001	5506.0	43.84%	15017.1	41.91%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-5	-1.178e+01	0.0001	739.0	5.88%	1798.6	5.02%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.173e+01	0.0001	1227.0	9.77%	3105.5	8.67%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-5	-1.159e+01	0.0001	1046.0	8.33%	2620.8	7.31%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-4	-1.097e+01	0.0001	6506.0	51.81%	17901.9	49.96%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-4	-1.028e+01	0.0003	256.0	2.04%	564.6	1.58%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-4	-9.944e+00	0.0004	1351.0	10.76%	3479.1	9.71%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e-4	-9.867e+00	0.0004	434.0	3.46%	1024.3	2.86%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-4	-9.764e+00	0.0005	724.0	5.77%	1790.2	5.00%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-4	-9.703e+00	0.0005	6466.0	51.49%	17835.6	49.77%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-4	-9.595e+00	0.0005	769.0	6.12%	1913.3	5.34%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-4	-9.581e+00	0.0005	1760.0	14.01%	4608.4	12.86%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-9.003e+00	0.0010	1856.0	14.78%	4888.0	13.64%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-3	-8.482e+00	0.0016	782.0	6.23%	1968.4	5.49%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-8.451e+00	0.0017	4683.0	37.29%	12820.5	35.78%
SeqBias: C/A-bias	MMMMMMMMMM	1e-3	-8.209e+00	0.0021	12525.0	99.74%	35669.8	99.54%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-3	-7.835e+00	0.0030	2536.0	20.19%	6811.9	19.01%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-3	-7.634e+00	0.0037	347.0	2.76%	826.4	2.31%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-7.631e+00	0.0037	1286.0	10.24%	3357.2	9.37%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-3	-7.591e+00	0.0038	279.0	2.22%	650.4	1.81%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-3	-7.552e+00	0.0039	2159.0	17.19%	5771.1	16.10%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-3	-7.465e+00	0.0042	1260.0	10.03%	3290.1	9.18%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-3	-7.312e+00	0.0049	2990.0	23.81%	8099.8	22.60%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-3	-7.198e+00	0.0054	977.0	7.78%	2523.3	7.04%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-3	-7.141e+00	0.0057	119.0	0.95%	250.6	0.70%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-3	-7.107e+00	0.0058	726.0	5.78%	1844.8	5.15%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-3	-7.013e+00	0.0064	130.0	1.04%	278.9	0.78%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-3	-6.997e+00	0.0064	3348.0	26.66%	9116.6	25.44%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-3	-6.954e+00	0.0067	1493.0	11.89%	3945.6	11.01%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.870e+00	0.0072	529.0	4.21%	1319.5	3.68%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-6.849e+00	0.0073	967.0	7.70%	2504.8	6.99%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-2	-6.834e+00	0.0074	2165.0	17.24%	5812.4	16.22%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-6.750e+00	0.0080	1201.0	9.56%	3147.5	8.78%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-2	-6.732e+00	0.0081	110.0	0.88%	231.2	0.65%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-2	-6.651e+00	0.0087	453.0	3.61%	1120.1	3.13%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-6.648e+00	0.0087	1068.0	8.50%	2785.3	7.77%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-6.484e+00	0.0101	1991.0	15.85%	5340.2	14.90%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-2	-6.369e+00	0.0113	12521.0	99.71%	35667.9	99.53%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-2	-6.283e+00	0.0122	20.0	0.16%	28.0	0.08%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-2	-6.265e+00	0.0123	2238.0	17.82%	6036.3	16.84%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-2	-6.166e+00	0.0135	2232.0	17.77%	6023.8	16.81%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.103e+00	0.0143	127.0	1.01%	278.5	0.78%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-2	-6.005e+00	0.0157	1286.0	10.24%	3402.6	9.50%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-2	-5.930e+00	0.0168	589.0	4.69%	1498.8	4.18%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-2	-5.928e+00	0.0168	245.0	1.95%	582.6	1.63%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-2	-5.891e+00	0.0173	209.0	1.66%	489.3	1.37%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-2	-5.855e+00	0.0178	32.0	0.25%	54.0	0.15%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-5.820e+00	0.0183	768.0	6.12%	1986.6	5.54%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-2	-5.805e+00	0.0185	197.0	1.57%	459.5	1.28%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-2	-5.782e+00	0.0188	2077.0	16.54%	5605.8	15.64%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-2	-5.779e+00	0.0188	103.0	0.82%	222.0	0.62%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-2	-5.772e+00	0.0188	1933.0	15.39%	5204.4	14.52%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-2	-5.750e+00	0.0191	588.0	4.68%	1499.1	4.18%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-2	-5.699e+00	0.0199	124.0	0.99%	274.8	0.77%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e-2	-5.534e+00	0.0234	162.0	1.29%	372.2	1.04%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-2	-5.533e+00	0.0234	1802.0	14.35%	4848.2	13.53%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-2	-5.527e+00	0.0234	455.0	3.62%	1145.8	3.20%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-2	-5.458e+00	0.0248	2549.0	20.30%	6938.1	19.36%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-2	-5.436e+00	0.0252	12008.0	95.62%	34085.2	95.12%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-2	-5.424e+00	0.0253	1476.0	11.75%	3946.9	11.01%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-2	-5.397e+00	0.0259	2247.0	17.89%	6095.8	17.01%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-5.386e+00	0.0260	5643.0	44.94%	15687.2	43.78%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-2	-5.317e+00	0.0277	89.0	0.71%	190.1	0.53%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.257e+00	0.0293	77.0	0.61%	161.5	0.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-5.218e+00	0.0303	2505.0	19.95%	6825.9	19.05%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-2	-5.176e+00	0.0314	467.0	3.72%	1185.0	3.31%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.100e+00	0.0337	1742.0	13.87%	4697.8	13.11%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e-2	-5.074e+00	0.0344	590.0	4.70%	1519.9	4.24%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-5.065e+00	0.0345	113.0	0.90%	252.1	0.70%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-4.938e+00	0.0390	681.0	5.42%	1770.7	4.94%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-2	-4.912e+00	0.0398	247.0	1.97%	601.9	1.68%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-4.911e+00	0.0398	310.0	2.47%	768.3	2.14%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-4.907e+00	0.0398	647.0	5.15%	1678.3	4.68%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-2	-4.613e+00	0.0528	395.0	3.15%	1001.3	2.79%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-4.581e+00	0.0543	64.0	0.51%	134.5	0.38%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.500e+00	0.0585	105.0	0.84%	237.8	0.66%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-4.477e+00	0.0596	185.0	1.47%	444.9	1.24%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-4.461e+00	0.0602	1314.0	10.46%	3530.9	9.85%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-4.446e+00	0.0608	3760.0	29.94%	10398.1	29.02%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-1	-4.425e+00	0.0618	225.0	1.79%	551.0	1.54%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-1	-4.417e+00	0.0619	308.0	2.45%	771.0	2.15%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.407e+00	0.0623	1158.0	9.22%	3100.0	8.65%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.390e+00	0.0630	44.0	0.35%	87.4	0.24%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e-1	-4.371e+00	0.0639	16.0	0.13%	24.9	0.07%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-4.327e+00	0.0664	548.0	4.36%	1422.9	3.97%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-1	-4.318e+00	0.0667	1651.0	13.15%	4474.4	12.49%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-4.284e+00	0.0687	779.0	6.20%	2056.9	5.74%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-4.280e+00	0.0687	203.0	1.62%	494.7	1.38%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-4.271e+00	0.0689	371.0	2.95%	943.5	2.63%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-1	-4.208e+00	0.0730	1329.0	10.58%	3582.0	10.00%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-4.187e+00	0.0742	445.0	3.54%	1145.4	3.20%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-4.182e+00	0.0742	561.0	4.47%	1461.5	4.08%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-4.176e+00	0.0743	521.0	4.15%	1352.2	3.77%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-1	-4.161e+00	0.0750	454.0	3.62%	1170.9	3.27%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-4.029e+00	0.0852	847.0	6.74%	2251.4	6.28%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.952e+00	0.0916	40.0	0.32%	80.1	0.22%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-1	-3.945e+00	0.0918	197.0	1.57%	483.2	1.35%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-1	-3.837e+00	0.1018	1842.0	14.67%	5029.9	14.04%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.752e+00	0.1104	688.0	5.48%	1821.9	5.08%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-1	-3.737e+00	0.1115	1479.0	11.78%	4018.7	11.21%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.696e+00	0.1156	2377.0	18.93%	6538.6	18.25%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.694e+00	0.1156	48.0	0.38%	101.3	0.28%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.693e+00	0.1156	283.0	2.25%	717.4	2.00%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-1	-3.661e+00	0.1181	1284.0	10.22%	3477.3	9.70%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-1	-3.640e+00	0.1200	1889.0	15.04%	5170.1	14.43%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-3.628e+00	0.1210	1077.0	8.58%	2902.1	8.10%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-1	-3.621e+00	0.1212	839.0	6.68%	2242.9	6.26%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-1	-3.588e+00	0.1248	2825.0	22.50%	7806.2	21.78%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-1	-3.578e+00	0.1255	1920.0	15.29%	5260.5	14.68%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-3.560e+00	0.1271	1181.0	9.40%	3194.0	8.91%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-3.558e+00	0.1271	275.0	2.19%	698.2	1.95%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-1	-3.469e+00	0.1381	429.0	3.42%	1118.9	3.12%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-3.463e+00	0.1383	767.0	6.11%	2048.8	5.72%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-1	-3.457e+00	0.1384	5120.0	40.77%	14317.8	39.95%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-3.331e+00	0.1564	70.0	0.56%	159.6	0.45%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-1	-3.299e+00	0.1608	1754.0	13.97%	4808.5	13.42%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.274e+00	0.1641	270.0	2.15%	690.2	1.93%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-1	-3.259e+00	0.1658	1283.0	10.22%	3491.8	9.74%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.249e+00	0.1669	1113.0	8.86%	3017.4	8.42%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-1	-3.222e+00	0.1708	1204.0	9.59%	3272.8	9.13%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-1	-3.197e+00	0.1743	723.0	5.76%	1935.6	5.40%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-1	-3.197e+00	0.1743	92.0	0.73%	217.2	0.61%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.194e+00	0.1743	479.0	3.81%	1262.2	3.52%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-1	-3.180e+00	0.1751	457.0	3.64%	1202.1	3.35%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-1	-3.174e+00	0.1753	270.0	2.15%	692.5	1.93%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-1	-3.173e+00	0.1753	7.0	0.06%	9.3	0.03%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-1	-3.132e+00	0.1814	1866.0	14.86%	5131.0	14.32%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-3.080e+00	0.1903	440.0	3.50%	1158.0	3.23%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.039e+00	0.1975	371.0	2.95%	970.4	2.71%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-3.038e+00	0.1975	1672.0	13.31%	4591.5	12.81%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-1	-3.033e+00	0.1975	1453.0	11.57%	3977.4	11.10%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e-1	-3.005e+00	0.2018	448.0	3.57%	1182.7	3.30%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-2.979e+00	0.2062	2540.0	20.23%	7038.9	19.64%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-1	-2.894e+00	0.2235	1137.0	9.05%	3099.6	8.65%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-2.894e+00	0.2235	2130.0	16.96%	5887.6	16.43%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-1	-2.892e+00	0.2235	343.0	2.73%	897.8	2.51%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-2.859e+00	0.2287	677.0	5.39%	1819.1	5.08%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-1	-2.848e+00	0.2305	31.0	0.25%	65.2	0.18%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-2.801e+00	0.2405	2366.0	18.84%	6558.7	18.30%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.783e+00	0.2441	734.0	5.84%	1980.7	5.53%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.775e+00	0.2451	5.0	0.04%	6.7	0.02%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.740e+00	0.2527	1297.0	10.33%	3554.9	9.92%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-1	-2.733e+00	0.2535	1084.0	8.63%	2958.1	8.25%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-1	-2.702e+00	0.2605	81.0	0.65%	195.0	0.54%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-1	-2.698e+00	0.2607	1577.0	12.56%	4342.3	12.12%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e-1	-2.683e+00	0.2634	194.0	1.54%	496.7	1.39%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.681e+00	0.2634	272.0	2.17%	708.8	1.98%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-1	-2.665e+00	0.2662	1730.0	13.78%	4774.2	13.32%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.662e+00	0.2662	110.0	0.88%	271.6	0.76%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.649e+00	0.2686	217.0	1.73%	559.4	1.56%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-2.636e+00	0.2710	21.0	0.17%	42.7	0.12%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e-1	-2.627e+00	0.2725	1123.0	8.94%	3072.7	8.57%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-2.618e+00	0.2738	168.0	1.34%	427.5	1.19%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-2.599e+00	0.2782	11871.0	94.53%	33765.5	94.23%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-1	-2.588e+00	0.2799	1132.0	9.01%	3099.4	8.65%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.575e+00	0.2826	761.0	6.06%	2063.0	5.76%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-2.573e+00	0.2826	1036.0	8.25%	2831.9	7.90%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.568e+00	0.2826	421.0	3.35%	1120.5	3.13%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.536e+00	0.2909	73.0	0.58%	175.9	0.49%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.519e+00	0.2947	1732.0	13.79%	4788.5	13.36%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-1	-2.501e+00	0.2989	978.0	7.79%	2672.9	7.46%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-1	-2.495e+00	0.2996	136.0	1.08%	343.6	0.96%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-2.486e+00	0.3012	244.0	1.94%	636.9	1.78%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-1	-2.434e+00	0.3163	79.0	0.63%	192.9	0.54%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-1	-2.427e+00	0.3174	1359.0	10.82%	3744.5	10.45%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.421e+00	0.3179	1158.0	9.22%	3180.5	8.88%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.300e+00	0.3575	2029.0	16.16%	5639.0	15.74%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.286e+00	0.3613	21.0	0.17%	44.1	0.12%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-2.270e+00	0.3661	2613.0	20.81%	7292.7	20.35%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-2.243e+00	0.3748	833.0	6.63%	2278.3	6.36%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.231e+00	0.3777	796.0	6.34%	2175.4	6.07%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.231e+00	0.3777	34.0	0.27%	77.1	0.22%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-2.220e+00	0.3793	2394.0	19.06%	6676.8	18.63%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.216e+00	0.3795	616.0	4.91%	1673.8	4.67%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.201e+00	0.3841	299.0	2.38%	794.9	2.22%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.200e+00	0.3841	1443.0	11.49%	3993.8	11.15%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-2.164e+00	0.3959	125.0	1.00%	319.6	0.89%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.152e+00	0.3991	17.0	0.14%	35.7	0.10%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.140e+00	0.4025	233.0	1.86%	614.1	1.71%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-2.133e+00	0.4039	1079.0	8.59%	2973.5	8.30%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-2.132e+00	0.4039	1074.0	8.55%	2959.4	8.26%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.127e+00	0.4039	141.0	1.12%	363.9	1.02%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-2.114e+00	0.4077	550.0	4.38%	1493.9	4.17%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-2.096e+00	0.4135	3563.0	28.37%	9999.4	27.90%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.081e+00	0.4186	55.0	0.44%	133.8	0.37%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-2.073e+00	0.4204	991.0	7.89%	2729.7	7.62%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-2.068e+00	0.4211	2366.0	18.84%	6608.8	18.44%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-2.056e+00	0.4247	73.0	0.58%	181.7	0.51%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-2.055e+00	0.4247	2022.0	16.10%	5636.2	15.73%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-2.053e+00	0.4247	1794.0	14.29%	4992.1	13.93%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.033e+00	0.4304	319.0	2.54%	854.2	2.38%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-2.017e+00	0.4362	287.0	2.29%	766.3	2.14%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-2.013e+00	0.4364	811.0	6.46%	2227.3	6.22%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.007e+00	0.4374	72.0	0.57%	179.7	0.50%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-2.000e+00	0.4393	804.0	6.40%	2208.3	6.16%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.968e+00	0.4520	1020.0	8.12%	2816.2	7.86%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.955e+00	0.4567	759.0	6.04%	2084.8	5.82%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.951e+00	0.4570	2107.0	16.78%	5884.1	16.42%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.911e+00	0.4738	878.0	6.99%	2420.5	6.75%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.910e+00	0.4738	70.0	0.56%	175.1	0.49%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.910e+00	0.4738	2433.0	19.37%	6810.1	19.00%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.898e+00	0.4756	242.0	1.93%	646.0	1.80%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.898e+00	0.4756	47.0	0.37%	114.3	0.32%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.896e+00	0.4756	39.0	0.31%	93.7	0.26%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.878e+00	0.4805	446.0	3.55%	1212.6	3.38%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.874e+00	0.4813	748.0	5.96%	2057.2	5.74%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.873e+00	0.4813	687.0	5.47%	1886.3	5.26%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.866e+00	0.4818	48.0	0.38%	117.6	0.33%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.863e+00	0.4818	797.0	6.35%	2195.7	6.13%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.857e+00	0.4832	2.0	0.02%	2.6	0.01%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.849e+00	0.4855	30.0	0.24%	70.1	0.20%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.839e+00	0.4891	540.0	4.30%	1477.0	4.12%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.836e+00	0.4891	1674.0	13.33%	4668.1	13.03%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.836e+00	0.4891	1016.0	8.09%	2812.5	7.85%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.835e+00	0.4891	768.0	6.12%	2115.2	5.90%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.835e+00	0.4891	449.0	3.58%	1222.8	3.41%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.832e+00	0.4891	61.0	0.49%	152.4	0.43%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.829e+00	0.4891	28.0	0.22%	65.6	0.18%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.829e+00	0.4891	431.0	3.43%	1172.2	3.27%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.820e+00	0.4891	409.0	3.26%	1111.8	3.10%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.819e+00	0.4891	273.0	2.17%	733.3	2.05%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.806e+00	0.4904	765.0	6.09%	2108.3	5.88%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-1.805e+00	0.4904	807.0	6.43%	2226.0	6.21%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.770e+00	0.5053	253.0	2.01%	679.7	1.90%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.754e+00	0.5120	187.0	1.49%	497.9	1.39%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-1.753e+00	0.5120	644.0	5.13%	1771.9	4.94%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.753e+00	0.5120	2324.0	18.51%	6514.6	18.18%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.746e+00	0.5120	12.0	0.10%	25.8	0.07%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.740e+00	0.5133	329.0	2.62%	892.0	2.49%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.727e+00	0.5186	1523.0	12.13%	4249.3	11.86%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.724e+00	0.5186	350.0	2.79%	950.0	2.65%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.723e+00	0.5186	2430.0	19.35%	6817.7	19.03%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-1.711e+00	0.5222	5883.0	46.85%	16640.4	46.44%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.696e+00	0.5287	684.0	5.45%	1886.5	5.26%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-1.695e+00	0.5287	1421.0	11.32%	3963.5	11.06%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.688e+00	0.5301	110.0	0.88%	287.8	0.80%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e0	-1.674e+00	0.5356	1230.0	9.79%	3425.0	9.56%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.672e+00	0.5356	607.0	4.83%	1671.2	4.66%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.653e+00	0.5441	181.0	1.44%	483.5	1.35%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.647e+00	0.5458	6.0	0.05%	11.7	0.03%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-1.646e+00	0.5458	368.0	2.93%	1003.0	2.80%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.628e+00	0.5535	702.0	5.59%	1940.4	5.41%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-1.606e+00	0.5637	2628.0	20.93%	7389.1	20.62%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.601e+00	0.5653	213.0	1.70%	573.7	1.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.596e+00	0.5665	133.0	1.06%	352.0	0.98%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-1.594e+00	0.5665	487.0	3.88%	1338.1	3.73%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.586e+00	0.5687	676.0	5.38%	1869.8	5.22%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.581e+00	0.5700	1123.0	8.94%	3129.3	8.73%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.571e+00	0.5746	482.0	3.84%	1325.8	3.70%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.557e+00	0.5807	2177.0	17.34%	6114.7	17.06%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.545e+00	0.5860	367.0	2.92%	1004.2	2.80%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.540e+00	0.5874	448.0	3.57%	1231.4	3.44%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.540e+00	0.5874	3550.0	28.27%	10015.8	27.95%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-1.539e+00	0.5874	418.0	3.33%	1147.0	3.20%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.528e+00	0.5898	283.0	2.25%	770.1	2.15%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.523e+00	0.5915	59.0	0.47%	151.1	0.42%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.522e+00	0.5915	619.0	4.93%	1712.6	4.78%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-1.511e+00	0.5951	1259.0	10.03%	3518.9	9.82%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-1.505e+00	0.5971	466.0	3.71%	1283.6	3.58%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.503e+00	0.5971	226.0	1.80%	612.6	1.71%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.470e+00	0.6151	537.0	4.28%	1484.8	4.14%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.467e+00	0.6155	104.0	0.83%	275.0	0.77%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.461e+00	0.6176	66.0	0.53%	171.2	0.48%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.450e+00	0.6227	183.0	1.46%	494.9	1.38%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.435e+00	0.6304	115.0	0.92%	306.8	0.86%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.432e+00	0.6305	1304.0	10.38%	3651.2	10.19%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.421e+00	0.6360	243.0	1.94%	662.9	1.85%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.409e+00	0.6422	784.0	6.24%	2183.9	6.09%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.402e+00	0.6448	290.0	2.31%	794.5	2.22%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.360e+00	0.6706	3.0	0.02%	5.4	0.01%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.352e+00	0.6744	912.0	7.26%	2548.6	7.11%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.343e+00	0.6789	3451.0	27.48%	9755.5	27.22%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.333e+00	0.6839	536.0	4.27%	1488.4	4.15%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.330e+00	0.6840	397.0	3.16%	1097.6	3.06%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.326e+00	0.6847	435.0	3.46%	1204.5	3.36%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.316e+00	0.6900	25.0	0.20%	62.3	0.17%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.290e+00	0.7061	930.0	7.41%	2603.3	7.26%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.286e+00	0.7072	1420.0	11.31%	3991.4	11.14%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.285e+00	0.7072	1252.0	9.97%	3515.0	9.81%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.279e+00	0.7089	283.0	2.25%	779.3	2.17%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-1.273e+00	0.7113	3335.0	26.56%	9433.8	26.33%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-1.260e+00	0.7191	1970.0	15.69%	5554.5	15.50%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.243e+00	0.7290	31.0	0.25%	79.8	0.22%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.237e+00	0.7317	355.0	2.83%	983.0	2.74%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.231e+00	0.7341	277.0	2.21%	764.3	2.13%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.229e+00	0.7341	119.0	0.95%	322.1	0.90%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.226e+00	0.7345	1317.0	10.49%	3704.5	10.34%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.211e+00	0.7440	584.0	4.65%	1630.3	4.55%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.209e+00	0.7440	378.0	3.01%	1049.9	2.93%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.198e+00	0.7495	26.0	0.21%	66.8	0.19%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.194e+00	0.7508	1910.0	15.21%	5390.6	15.04%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.192e+00	0.7508	65.0	0.52%	173.8	0.49%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-1.191e+00	0.7508	2069.0	16.48%	5842.4	16.30%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.172e+00	0.7618	1357.0	10.81%	3822.1	10.67%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.168e+00	0.7628	862.0	6.86%	2419.7	6.75%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.167e+00	0.7628	181.0	1.44%	497.7	1.39%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.158e+00	0.7672	1144.0	9.11%	3219.3	8.98%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-1.157e+00	0.7672	39.0	0.31%	102.1	0.28%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.155e+00	0.7672	1391.0	11.08%	3920.7	10.94%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.145e+00	0.7715	87.0	0.69%	235.9	0.66%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.124e+00	0.7858	1247.0	9.93%	3514.4	9.81%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.123e+00	0.7858	521.0	4.15%	1457.8	4.07%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.118e+00	0.7868	67.0	0.53%	180.0	0.50%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.117e+00	0.7868	1300.0	10.35%	3665.7	10.23%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.114e+00	0.7868	95.0	0.76%	258.4	0.72%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.114e+00	0.7868	95.0	0.76%	258.4	0.72%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.110e+00	0.7868	803.0	6.39%	2256.1	6.30%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.109e+00	0.7868	462.0	3.68%	1291.6	3.60%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.108e+00	0.7868	91.0	0.72%	247.1	0.69%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.107e+00	0.7868	434.0	3.46%	1212.7	3.38%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.097e+00	0.7884	460.0	3.66%	1286.6	3.59%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.093e+00	0.7894	27.0	0.22%	70.4	0.20%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.088e+00	0.7922	143.0	1.14%	393.6	1.10%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-1.076e+00	0.7994	235.0	1.87%	652.5	1.82%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.074e+00	0.7994	62.0	0.49%	167.6	0.47%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.067e+00	0.8028	534.0	4.25%	1497.4	4.18%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-1.065e+00	0.8028	157.0	1.25%	434.0	1.21%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.059e+00	0.8056	14.0	0.11%	35.4	0.10%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.058e+00	0.8056	374.0	2.98%	1045.4	2.92%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.054e+00	0.8061	670.0	5.34%	1883.6	5.26%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.043e+00	0.8134	38.0	0.30%	101.0	0.28%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-1.042e+00	0.8134	567.0	4.52%	1592.1	4.44%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.035e+00	0.8162	690.0	5.49%	1941.0	5.42%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-1.034e+00	0.8162	184.0	1.47%	510.0	1.42%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-1.029e+00	0.8169	506.0	4.03%	1420.4	3.96%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.023e+00	0.8198	622.0	4.95%	1749.7	4.88%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.022e+00	0.8198	910.0	7.25%	2566.1	7.16%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.022e+00	0.8198	2996.0	23.86%	8499.6	23.72%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.013e+00	0.8230	1794.0	14.29%	5079.2	14.17%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.008e+00	0.8251	683.0	5.44%	1923.6	5.37%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-9.992e-01	0.8305	1084.0	8.63%	3062.7	8.55%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.945e-01	0.8325	1276.0	10.16%	3608.1	10.07%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-9.888e-01	0.8354	33.0	0.26%	88.6	0.25%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-9.853e-01	0.8364	1035.0	8.24%	2924.4	8.16%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-9.836e-01	0.8364	297.0	2.37%	831.5	2.32%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-9.765e-01	0.8401	17.0	0.14%	44.2	0.12%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-9.678e-01	0.8456	30.0	0.24%	80.4	0.22%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-9.677e-01	0.8456	432.0	3.44%	1214.1	3.39%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-9.673e-01	0.8456	769.0	6.12%	2170.8	6.06%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-9.618e-01	0.8456	49.0	0.39%	133.6	0.37%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-9.513e-01	0.8521	50.0	0.40%	136.1	0.38%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-9.478e-01	0.8532	319.0	2.54%	895.6	2.50%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-9.427e-01	0.8557	1116.0	8.89%	3158.6	8.81%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-9.407e-01	0.8557	1009.0	8.03%	2854.4	7.97%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.348e-01	0.8587	137.0	1.09%	381.3	1.06%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-9.331e-01	0.8587	1026.0	8.17%	2903.0	8.10%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.232e-01	0.8650	208.0	1.66%	582.5	1.63%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-9.165e-01	0.8689	118.0	0.94%	328.7	0.92%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-9.163e-01	0.8689	2146.0	17.09%	6092.2	17.00%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-9.150e-01	0.8689	947.0	7.54%	2680.4	7.48%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.067e-01	0.8718	25.0	0.20%	67.3	0.19%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-9.050e-01	0.8718	461.0	3.67%	1300.3	3.63%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-8.873e-01	0.8851	259.0	2.06%	728.2	2.03%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-8.782e-01	0.8913	610.0	4.86%	1725.2	4.81%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-8.772e-01	0.8913	32.0	0.25%	87.9	0.25%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-8.655e-01	0.8989	241.0	1.92%	678.6	1.89%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-8.640e-01	0.8989	1067.0	8.50%	3026.3	8.45%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-8.600e-01	0.9000	2147.0	17.10%	6102.0	17.03%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-8.563e-01	0.9014	106.0	0.84%	296.6	0.83%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-8.561e-01	0.9014	183.0	1.46%	514.1	1.43%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-8.469e-01	0.9061	580.0	4.62%	1642.4	4.58%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.326e-01	0.9172	332.0	2.64%	938.1	2.62%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-8.326e-01	0.9172	878.0	6.99%	2491.9	6.95%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-8.324e-01	0.9172	427.0	3.40%	1208.7	3.37%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-8.267e-01	0.9172	265.0	2.11%	748.1	2.09%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-8.232e-01	0.9182	16.0	0.13%	43.3	0.12%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-8.137e-01	0.9250	863.0	6.87%	2450.0	6.84%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-8.117e-01	0.9250	1650.0	13.14%	4692.7	13.10%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.074e-01	0.9270	17.0	0.14%	46.7	0.13%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-8.021e-01	0.9300	45.0	0.36%	125.4	0.35%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.004e-01	0.9300	51.0	0.41%	142.3	0.40%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-7.807e-01	0.9463	1215.0	9.68%	3456.8	9.65%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-7.801e-01	0.9463	1322.0	10.53%	3761.3	10.50%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-7.682e-01	0.9542	1024.0	8.15%	2913.7	8.13%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.665e-01	0.9542	9.0	0.07%	24.5	0.07%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-7.628e-01	0.9555	352.0	2.80%	999.3	2.79%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-7.604e-01	0.9558	1733.0	13.80%	4935.2	13.77%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-7.594e-01	0.9558	301.0	2.40%	854.5	2.38%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-7.556e-01	0.9566	819.0	6.52%	2331.0	6.50%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-7.548e-01	0.9566	653.0	5.20%	1857.5	5.18%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-7.455e-01	0.9624	1989.0	15.84%	5667.7	15.82%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-7.439e-01	0.9624	446.0	3.55%	1268.5	3.54%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-7.420e-01	0.9624	1493.0	11.89%	4253.0	11.87%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-7.373e-01	0.9644	2132.0	16.98%	6076.8	16.96%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.360e-01	0.9644	145.0	1.15%	411.1	1.15%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-7.305e-01	0.9672	882.0	7.02%	2512.5	7.01%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.269e-01	0.9687	347.0	2.76%	987.3	2.75%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-7.173e-01	0.9762	3423.0	27.26%	9762.2	27.24%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-7.133e-01	0.9781	2897.0	23.07%	8262.8	23.06%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-7.119e-01	0.9781	6394.0	50.92%	18240.4	50.90%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-6.991e-01	0.9881	1741.0	13.86%	4966.3	13.86%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.990e-01	0.9881	108.0	0.86%	307.7	0.86%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.939e-01	0.9894	532.0	4.24%	1518.0	4.24%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-6.901e-01	0.9912	165.0	1.31%	470.8	1.31%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-6.878e-01	0.9916	1458.0	11.61%	4160.8	11.61%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-6.856e-01	0.9918	12539.0	99.85%	35778.3	99.84%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-6.827e-01	0.9927	29.0	0.23%	82.7	0.23%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.786e-01	0.9949	2725.0	21.70%	7777.8	21.70%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-6.753e-01	0.9962	1092.0	8.70%	3117.9	8.70%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.636e-01	1.0000	39.0	0.31%	111.5	0.31%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-6.596e-01	1.0000	1621.0	12.91%	4629.1	12.92%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-6.541e-01	1.0000	1523.0	12.13%	4350.5	12.14%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-6.515e-01	1.0000	862.0	6.86%	2463.4	6.87%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-6.512e-01	1.0000	417.0	3.32%	1192.4	3.33%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-6.501e-01	1.0000	78.0	0.62%	223.3	0.62%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-6.492e-01	1.0000	376.0	2.99%	1075.7	3.00%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.470e-01	1.0000	158.0	1.26%	452.8	1.26%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.469e-01	1.0000	19.0	0.15%	54.2	0.15%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-6.437e-01	1.0000	965.0	7.68%	2758.4	7.70%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.416e-01	1.0000	131.0	1.04%	375.1	1.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.374e-01	1.0000	36.0	0.29%	103.9	0.29%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.373e-01	1.0000	12.0	0.10%	34.2	0.10%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.337e-01	1.0000	213.0	1.70%	610.4	1.70%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.275e-01	1.0000	61.0	0.49%	175.2	0.49%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.235e-01	1.0000	246.0	1.96%	706.0	1.97%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-6.128e-01	1.0000	1060.0	8.44%	3033.5	8.47%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-6.115e-01	1.0000	49.0	0.39%	141.5	0.39%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-6.107e-01	1.0000	5.0	0.04%	14.7	0.04%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-6.012e-01	1.0000	1442.0	11.48%	4126.5	11.52%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-5.980e-01	1.0000	338.0	2.69%	970.3	2.71%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-5.962e-01	1.0000	169.0	1.35%	487.0	1.36%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-5.929e-01	1.0000	644.0	5.13%	1846.5	5.15%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.905e-01	1.0000	28.0	0.22%	81.9	0.23%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.844e-01	1.0000	143.0	1.14%	412.7	1.15%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.791e-01	1.0000	274.0	2.18%	788.4	2.20%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-5.716e-01	1.0000	202.0	1.61%	582.9	1.63%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-5.672e-01	1.0000	429.0	3.42%	1233.4	3.44%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-5.668e-01	1.0000	181.0	1.44%	523.0	1.46%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.648e-01	1.0000	12.0	0.10%	35.4	0.10%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-5.647e-01	1.0000	570.0	4.54%	1637.8	4.57%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.586e-01	1.0000	161.0	1.28%	465.2	1.30%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.577e-01	1.0000	105.0	0.84%	304.4	0.85%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-5.533e-01	1.0000	123.0	0.98%	356.8	1.00%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-5.508e-01	1.0000	484.0	3.85%	1392.6	3.89%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-5.465e-01	1.0000	142.0	1.13%	411.2	1.15%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-5.456e-01	1.0000	101.0	0.80%	293.4	0.82%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-5.406e-01	1.0000	1377.0	10.97%	3949.8	11.02%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e0	-5.336e-01	1.0000	114.0	0.91%	331.1	0.92%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-5.334e-01	1.0000	496.0	3.95%	1428.8	3.99%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-5.201e-01	1.0000	145.0	1.15%	421.9	1.18%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-5.189e-01	1.0000	23.0	0.18%	68.8	0.19%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-5.098e-01	1.0000	894.0	7.12%	2571.6	7.18%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-5.096e-01	1.0000	813.0	6.47%	2339.2	6.53%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-5.041e-01	1.0000	929.0	7.40%	2672.7	7.46%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.916e-01	1.0000	76.0	0.61%	223.7	0.62%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-4.859e-01	1.0000	1417.0	11.28%	4072.1	11.36%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.739e-01	1.0000	295.0	2.35%	857.0	2.39%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-4.661e-01	1.0000	107.0	0.85%	314.1	0.88%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.622e-01	1.0000	760.0	6.05%	2193.5	6.12%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-4.580e-01	1.0000	508.0	4.05%	1470.8	4.10%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-4.550e-01	1.0000	550.0	4.38%	1591.3	4.44%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.549e-01	1.0000	214.0	1.70%	624.4	1.74%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.548e-01	1.0000	1900.0	15.13%	5460.2	15.24%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-4.547e-01	1.0000	3804.0	30.29%	10904.1	30.43%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.531e-01	1.0000	408.0	3.25%	1183.8	3.30%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-4.522e-01	1.0000	114.0	0.91%	335.4	0.94%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-4.431e-01	1.0000	1008.0	8.03%	2907.8	8.11%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.408e-01	1.0000	159.0	1.27%	466.3	1.30%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.404e-01	1.0000	178.0	1.42%	521.5	1.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.334e-01	1.0000	114.0	0.91%	336.6	0.94%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.327e-01	1.0000	290.0	2.31%	846.0	2.36%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-4.309e-01	1.0000	2109.0	16.79%	6063.6	16.92%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-4.293e-01	1.0000	185.0	1.47%	542.1	1.51%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-4.285e-01	1.0000	26.0	0.21%	79.0	0.22%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-4.282e-01	1.0000	2229.0	17.75%	6407.1	17.88%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.219e-01	1.0000	110.0	0.88%	325.5	0.91%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.206e-01	1.0000	142.0	1.13%	418.5	1.17%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-4.203e-01	1.0000	100.0	0.80%	296.2	0.83%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-4.135e-01	1.0000	629.0	5.01%	1823.5	5.09%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-4.079e-01	1.0000	12546.0	99.90%	35803.0	99.91%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.034e-01	1.0000	484.0	3.85%	1407.6	3.93%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.021e-01	1.0000	44.0	0.35%	133.7	0.37%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-3.983e-01	1.0000	63.0	0.50%	189.6	0.53%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-3.938e-01	1.0000	1554.0	12.37%	4482.0	12.51%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.924e-01	1.0000	26.0	0.21%	80.2	0.22%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.876e-01	1.0000	32.0	0.25%	98.9	0.28%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-3.835e-01	1.0000	554.0	4.41%	1611.9	4.50%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-3.755e-01	1.0000	495.0	3.94%	1442.9	4.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.752e-01	1.0000	44.0	0.35%	134.3	0.37%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-3.713e-01	1.0000	332.0	2.64%	972.0	2.71%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.693e-01	1.0000	864.0	6.88%	2505.8	6.99%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.675e-01	1.0000	51.0	0.41%	155.9	0.43%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-3.661e-01	1.0000	573.0	4.56%	1668.2	4.66%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-3.596e-01	1.0000	238.0	1.90%	701.1	1.96%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.579e-01	1.0000	298.0	2.37%	875.6	2.44%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-3.524e-01	1.0000	2.0	0.02%	7.8	0.02%
 Ik-1	NHTTGGGAATRCC	1e0	-3.505e-01	1.0000	12558.0	100.00%	35835.0	100.00%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.384e-01	1.0000	623.0	4.96%	1816.8	5.07%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-3.352e-01	1.0000	81.0	0.65%	245.7	0.69%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-3.327e-01	1.0000	128.0	1.02%	383.7	1.07%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.320e-01	1.0000	115.0	0.92%	345.2	0.96%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-3.311e-01	1.0000	401.0	3.19%	1176.3	3.28%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.282e-01	1.0000	38.0	0.30%	118.5	0.33%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-3.268e-01	1.0000	612.0	4.87%	1786.6	4.99%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.233e-01	1.0000	21.0	0.17%	67.3	0.19%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-3.230e-01	1.0000	484.0	3.85%	1417.3	3.95%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-3.184e-01	1.0000	1170.0	9.32%	3394.2	9.47%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.182e-01	1.0000	701.0	5.58%	2044.0	5.70%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.159e-01	1.0000	312.0	2.48%	920.7	2.57%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.107e-01	1.0000	1670.0	13.30%	4832.0	13.48%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.092e-01	1.0000	177.0	1.41%	528.3	1.47%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.058e-01	1.0000	250.0	1.99%	741.3	2.07%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.964e-01	1.0000	453.0	3.61%	1331.7	3.72%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.893e-01	1.0000	1516.0	12.07%	4395.3	12.27%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.791e-01	1.0000	16.0	0.13%	53.8	0.15%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.755e-01	1.0000	29.0	0.23%	93.7	0.26%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-2.749e-01	1.0000	205.0	1.63%	613.1	1.71%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-2.707e-01	1.0000	676.0	5.38%	1980.5	5.53%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-2.636e-01	1.0000	326.0	2.60%	967.0	2.70%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-2.623e-01	1.0000	48.0	0.38%	151.8	0.42%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.617e-01	1.0000	59.0	0.47%	184.8	0.52%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-2.613e-01	1.0000	728.0	5.80%	2132.7	5.95%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.607e-01	1.0000	64.0	0.51%	199.8	0.56%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-2.604e-01	1.0000	1309.0	10.42%	3807.8	10.63%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-2.583e-01	1.0000	72.0	0.57%	223.8	0.62%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.569e-01	1.0000	1852.0	14.75%	5369.6	14.98%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.490e-01	1.0000	813.0	6.47%	2380.7	6.64%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.428e-01	1.0000	369.0	2.94%	1095.3	3.06%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.370e-01	1.0000	298.0	2.37%	889.8	2.48%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-2.338e-01	1.0000	20.0	0.16%	67.5	0.19%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.325e-01	1.0000	2416.0	19.24%	6996.6	19.52%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.325e-01	1.0000	1534.0	12.22%	4462.4	12.45%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.227e-01	1.0000	404.0	3.22%	1200.6	3.35%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.224e-01	1.0000	202.0	1.61%	610.6	1.70%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-2.155e-01	1.0000	67.0	0.53%	211.8	0.59%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.146e-01	1.0000	122.0	0.97%	375.4	1.05%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-2.132e-01	1.0000	2547.0	20.28%	7379.6	20.59%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-2.108e-01	1.0000	636.0	5.06%	1876.7	5.24%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-2.105e-01	1.0000	193.0	1.54%	585.1	1.63%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.075e-01	1.0000	43.0	0.34%	139.4	0.39%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.028e-01	1.0000	349.0	2.78%	1043.6	2.91%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-2.007e-01	1.0000	3951.0	31.46%	11408.2	31.84%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-2.004e-01	1.0000	2400.0	19.11%	6962.9	19.43%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.996e-01	1.0000	427.0	3.40%	1271.8	3.55%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.995e-01	1.0000	56.0	0.45%	179.4	0.50%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.969e-01	1.0000	1185.0	9.44%	3467.5	9.68%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.961e-01	1.0000	49.0	0.39%	158.7	0.44%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-1.938e-01	1.0000	743.0	5.92%	2190.5	6.11%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.904e-01	1.0000	1.0	0.01%	5.8	0.02%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.863e-01	1.0000	2169.0	17.27%	6304.4	17.59%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.844e-01	1.0000	1085.0	8.64%	3182.1	8.88%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.787e-01	1.0000	266.0	2.12%	804.5	2.24%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.748e-01	1.0000	3602.0	28.68%	10421.8	29.08%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-1.735e-01	1.0000	5228.0	41.63%	15074.2	42.07%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.722e-01	1.0000	1600.0	12.74%	4672.4	13.04%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.687e-01	1.0000	944.0	7.52%	2779.4	7.76%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.684e-01	1.0000	779.0	6.20%	2301.4	6.42%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.666e-01	1.0000	814.0	6.48%	2403.6	6.71%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.598e-01	1.0000	40.0	0.32%	133.5	0.37%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.595e-01	1.0000	1240.0	9.87%	3638.2	10.15%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.564e-01	1.0000	144.0	1.15%	447.4	1.25%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.559e-01	1.0000	744.0	5.92%	2203.3	6.15%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.532e-01	1.0000	6502.0	51.78%	18723.1	52.25%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.477e-01	1.0000	951.0	7.57%	2807.0	7.83%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.446e-01	1.0000	716.0	5.70%	2125.1	5.93%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-1.437e-01	1.0000	64.0	0.51%	208.6	0.58%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.427e-01	1.0000	1530.0	12.18%	4482.5	12.51%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.423e-01	1.0000	11.0	0.09%	42.7	0.12%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.399e-01	1.0000	918.0	7.31%	2713.5	7.57%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-1.384e-01	1.0000	1999.0	15.92%	5836.7	16.29%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.370e-01	1.0000	2301.0	18.32%	6706.4	18.71%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.322e-01	1.0000	946.0	7.53%	2797.5	7.81%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.294e-01	1.0000	388.0	3.09%	1172.6	3.27%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.291e-01	1.0000	141.0	1.12%	442.4	1.23%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.273e-01	1.0000	69.0	0.55%	225.6	0.63%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.270e-01	1.0000	863.0	6.87%	2558.4	7.14%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.253e-01	1.0000	373.0	2.97%	1129.7	3.15%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.251e-01	1.0000	615.0	4.90%	1837.3	5.13%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.249e-01	1.0000	5.0	0.04%	22.1	0.06%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.210e-01	1.0000	2175.0	17.32%	6353.0	17.73%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-1.205e-01	1.0000	584.0	4.65%	1748.4	4.88%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.205e-01	1.0000	408.0	3.25%	1233.2	3.44%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-1.180e-01	1.0000	30.0	0.24%	105.6	0.29%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.108e-01	1.0000	130.0	1.04%	412.5	1.15%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.087e-01	1.0000	971.0	7.73%	2879.8	8.04%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.081e-01	1.0000	196.0	1.56%	610.3	1.70%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.066e-01	1.0000	97.0	0.77%	313.2	0.87%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.063e-01	1.0000	51.0	0.41%	172.9	0.48%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.055e-01	1.0000	160.0	1.27%	503.5	1.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.054e-01	1.0000	768.0	6.12%	2290.1	6.39%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.000e-01	1.0000	312.0	2.48%	956.8	2.67%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.909e-02	1.0000	75.0	0.60%	247.0	0.69%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-9.509e-02	1.0000	363.0	2.89%	1108.3	3.09%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-9.463e-02	1.0000	6.0	0.05%	27.4	0.08%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-9.406e-02	1.0000	305.0	2.43%	937.3	2.62%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-9.399e-02	1.0000	2615.0	20.82%	7636.9	21.31%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-9.370e-02	1.0000	563.0	4.48%	1696.8	4.73%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-9.084e-02	1.0000	659.0	5.25%	1978.2	5.52%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-9.056e-02	1.0000	145.0	1.15%	461.2	1.29%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.889e-02	1.0000	126.0	1.00%	404.9	1.13%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.824e-02	1.0000	1733.0	13.80%	5097.5	14.22%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.730e-02	1.0000	13.0	0.10%	52.5	0.15%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-8.680e-02	1.0000	167.0	1.33%	528.3	1.47%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-8.640e-02	1.0000	153.0	1.22%	486.7	1.36%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-8.528e-02	1.0000	1904.0	15.16%	5593.1	15.61%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.504e-02	1.0000	1825.0	14.53%	5365.7	14.97%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-8.254e-02	1.0000	95.0	0.76%	311.2	0.87%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-8.248e-02	1.0000	24.0	0.19%	89.6	0.25%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.988e-02	1.0000	36.0	0.29%	128.4	0.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.988e-02	1.0000	36.0	0.29%	128.4	0.36%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-7.896e-02	1.0000	3471.0	27.64%	10109.6	28.21%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.817e-02	1.0000	157.0	1.25%	500.4	1.40%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-7.306e-02	1.0000	1117.0	8.89%	3322.2	9.27%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-7.229e-02	1.0000	136.0	1.08%	438.9	1.22%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-7.085e-02	1.0000	90.0	0.72%	298.9	0.83%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-7.036e-02	1.0000	1980.0	15.77%	5824.9	16.25%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.968e-02	1.0000	521.0	4.15%	1583.9	4.42%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.789e-02	1.0000	238.0	1.90%	746.2	2.08%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-6.704e-02	1.0000	127.0	1.01%	412.8	1.15%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-6.420e-02	1.0000	770.0	6.13%	2316.0	6.46%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.386e-02	1.0000	948.0	7.55%	2836.8	7.92%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-6.350e-02	1.0000	2973.0	23.67%	8693.2	24.26%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-6.237e-02	1.0000	203.0	1.62%	643.9	1.80%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.149e-02	1.0000	89.0	0.71%	297.9	0.83%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.147e-02	1.0000	139.0	1.11%	450.9	1.26%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.078e-02	1.0000	280.0	2.23%	874.1	2.44%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.981e-02	1.0000	463.0	3.69%	1417.6	3.96%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-5.850e-02	1.0000	2344.0	18.67%	6886.6	19.22%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.741e-02	1.0000	508.0	4.05%	1551.5	4.33%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-5.692e-02	1.0000	1111.0	8.85%	3316.3	9.25%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-5.382e-02	1.0000	1472.0	11.72%	4368.3	12.19%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.274e-02	1.0000	410.0	3.26%	1264.6	3.53%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-5.198e-02	1.0000	1500.0	11.94%	4452.0	12.42%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-5.191e-02	1.0000	568.0	4.52%	1731.2	4.83%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-5.131e-02	1.0000	538.0	4.28%	1643.3	4.59%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-5.043e-02	1.0000	1495.0	11.90%	4438.6	12.39%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-5.023e-02	1.0000	3133.0	24.95%	9169.3	25.59%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.960e-02	1.0000	111.0	0.88%	368.3	1.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.899e-02	1.0000	51.0	0.41%	182.0	0.51%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-4.825e-02	1.0000	318.0	2.53%	993.2	2.77%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.485e-02	1.0000	2820.0	22.46%	8275.8	23.09%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.416e-02	1.0000	9.0	0.07%	42.3	0.12%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.411e-02	1.0000	802.0	6.39%	2425.0	6.77%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.272e-02	1.0000	97.0	0.77%	327.3	0.91%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-4.252e-02	1.0000	997.0	7.94%	2996.9	8.36%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-4.210e-02	1.0000	1265.0	10.07%	3778.2	10.54%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-4.173e-02	1.0000	165.0	1.31%	536.3	1.50%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-4.010e-02	1.0000	1090.0	8.68%	3270.1	9.13%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-3.927e-02	1.0000	232.0	1.85%	740.2	2.07%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-3.898e-02	1.0000	3.0	0.02%	19.4	0.05%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.858e-02	1.0000	212.0	1.69%	680.6	1.90%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-3.713e-02	1.0000	3844.0	30.61%	11233.8	31.35%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-3.702e-02	1.0000	778.0	6.20%	2360.2	6.59%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-3.694e-02	1.0000	520.0	4.14%	1600.4	4.47%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-3.676e-02	1.0000	3216.0	25.61%	9428.9	26.31%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-3.636e-02	1.0000	301.0	2.40%	949.6	2.65%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.313e-02	1.0000	264.0	2.10%	840.7	2.35%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.251e-02	1.0000	176.0	1.40%	574.3	1.60%
SeqBias: TA-repeat	TATATATATA	1e0	-3.029e-02	1.0000	3414.0	27.19%	10011.0	27.94%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-2.994e-02	1.0000	598.0	4.76%	1837.6	5.13%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-2.864e-02	1.0000	935.0	7.45%	2830.4	7.90%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-2.860e-02	1.0000	385.0	3.07%	1207.0	3.37%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-2.734e-02	1.0000	258.0	2.05%	826.6	2.31%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-2.708e-02	1.0000	2978.0	23.71%	8761.1	24.45%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.599e-02	1.0000	914.0	7.28%	2772.1	7.74%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-2.513e-02	1.0000	673.0	5.36%	2064.9	5.76%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-2.434e-02	1.0000	694.0	5.53%	2127.8	5.94%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-2.379e-02	1.0000	1274.0	10.14%	3829.2	10.69%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-2.377e-02	1.0000	729.0	5.81%	2231.1	6.23%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-2.296e-02	1.0000	2835.0	22.58%	8358.2	23.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.287e-02	1.0000	955.0	7.60%	2897.8	8.09%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-2.275e-02	1.0000	3005.0	23.93%	8849.9	24.70%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-2.271e-02	1.0000	2980.0	23.73%	8777.1	24.49%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.264e-02	1.0000	99.0	0.79%	342.2	0.95%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-2.199e-02	1.0000	2996.0	23.86%	8825.1	24.63%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.170e-02	1.0000	999.0	7.96%	3029.0	8.45%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-2.161e-02	1.0000	455.0	3.62%	1422.7	3.97%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.158e-02	1.0000	377.0	3.00%	1189.7	3.32%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.090e-02	1.0000	69.0	0.55%	248.1	0.69%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.075e-02	1.0000	883.0	7.03%	2689.7	7.51%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-2.047e-02	1.0000	2883.0	22.96%	8503.4	23.73%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.002e-02	1.0000	1197.0	9.53%	3611.4	10.08%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.946e-02	1.0000	1474.0	11.74%	4421.9	12.34%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.945e-02	1.0000	303.0	2.41%	969.3	2.70%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.845e-02	1.0000	511.0	4.07%	1594.0	4.45%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.784e-02	1.0000	75.0	0.60%	269.3	0.75%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-1.742e-02	1.0000	4858.0	38.68%	14191.6	39.60%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-1.741e-02	1.0000	1373.0	10.93%	4131.8	11.53%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-1.645e-02	1.0000	556.0	4.43%	1730.6	4.83%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.598e-02	1.0000	238.0	1.90%	776.6	2.17%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.514e-02	1.0000	202.0	1.61%	667.1	1.86%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.458e-02	1.0000	865.0	6.89%	2648.7	7.39%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-1.414e-02	1.0000	562.0	4.48%	1752.7	4.89%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-1.412e-02	1.0000	740.0	5.89%	2280.9	6.36%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.398e-02	1.0000	1061.0	8.45%	3226.8	9.00%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.331e-02	1.0000	50.0	0.40%	192.0	0.54%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.289e-02	1.0000	682.0	5.43%	2111.4	5.89%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.280e-02	1.0000	485.0	3.86%	1525.3	4.26%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.276e-02	1.0000	811.0	6.46%	2493.5	6.96%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-1.189e-02	1.0000	630.0	5.02%	1959.0	5.47%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.169e-02	1.0000	102.0	0.81%	361.0	1.01%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.130e-02	1.0000	1391.0	11.08%	4201.4	11.72%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.125e-02	1.0000	10.0	0.08%	53.4	0.15%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.090e-02	1.0000	1977.0	15.74%	5912.0	16.50%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.090e-02	1.0000	237.0	1.89%	780.0	2.18%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.078e-02	1.0000	328.0	2.61%	1057.5	2.95%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-1.075e-02	1.0000	3356.0	26.72%	9903.7	27.64%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.055e-02	1.0000	1.0	0.01%	13.1	0.04%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.019e-02	1.0000	270.0	2.15%	882.4	2.46%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-9.720e-03	1.0000	718.0	5.72%	2226.1	6.21%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-9.578e-03	1.0000	809.0	6.44%	2496.3	6.97%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-9.383e-03	1.0000	2692.0	21.44%	7992.7	22.30%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-8.553e-03	1.0000	1132.0	9.01%	3452.7	9.64%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.445e-03	1.0000	78.0	0.62%	287.9	0.80%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.758e-03	1.0000	934.0	7.44%	2872.6	8.02%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.397e-03	1.0000	121.0	0.96%	426.2	1.19%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-6.500e-03	1.0000	3074.0	24.48%	9115.3	25.44%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-5.993e-03	1.0000	3846.0	30.63%	11346.3	31.66%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-5.968e-03	1.0000	1704.0	13.57%	5141.5	14.35%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.918e-03	1.0000	945.0	7.53%	2913.5	8.13%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-5.896e-03	1.0000	1052.0	8.38%	3230.0	9.01%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-5.469e-03	1.0000	622.0	4.95%	1956.5	5.46%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.100e-03	1.0000	185.0	1.47%	632.8	1.77%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-5.001e-03	1.0000	1354.0	10.78%	4123.4	11.51%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-4.969e-03	1.0000	396.0	3.15%	1279.2	3.57%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.929e-03	1.0000	253.0	2.01%	843.7	2.35%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.817e-03	1.0000	746.0	5.94%	2329.0	6.50%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.565e-03	1.0000	348.0	2.77%	1135.3	3.17%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.542e-03	1.0000	524.0	4.17%	1667.3	4.65%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-4.377e-03	1.0000	998.0	7.95%	3079.5	8.59%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-4.016e-03	1.0000	1119.0	8.91%	3439.2	9.60%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.980e-03	1.0000	117.0	0.93%	421.6	1.18%
Tal1	CATCTG	1e0	-3.665e-03	1.0000	984.0	7.84%	3043.9	8.49%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-3.346e-03	1.0000	2208.0	17.58%	6634.4	18.51%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-3.331e-03	1.0000	3121.0	24.85%	9283.3	25.91%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.264e-03	1.0000	322.0	2.56%	1062.9	2.97%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-3.195e-03	1.0000	2665.0	21.22%	7964.6	22.23%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.194e-03	1.0000	129.0	1.03%	462.9	1.29%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-3.182e-03	1.0000	875.0	6.97%	2724.8	7.60%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.177e-03	1.0000	803.0	6.39%	2510.7	7.01%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.130e-03	1.0000	363.0	2.89%	1188.7	3.32%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-2.753e-03	1.0000	644.0	5.13%	2039.8	5.69%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.614e-03	1.0000	219.0	1.74%	748.8	2.09%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.375e-03	1.0000	207.0	1.65%	712.8	1.99%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-2.132e-03	1.0000	4616.0	36.76%	13613.6	37.99%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.820e-03	1.0000	1.0	0.01%	18.9	0.05%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.783e-03	1.0000	238.0	1.90%	813.5	2.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.772e-03	1.0000	1150.0	9.16%	3556.9	9.93%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.762e-03	1.0000	165.0	1.31%	584.4	1.63%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.732e-03	1.0000	623.0	4.96%	1987.7	5.55%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.709e-03	1.0000	291.0	2.32%	978.5	2.73%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.613e-03	1.0000	1236.0	9.84%	3813.6	10.64%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.557e-03	1.0000	2297.0	18.29%	6924.3	19.32%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.550e-03	1.0000	1262.0	10.05%	3891.4	10.86%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.515e-03	1.0000	614.0	4.89%	1963.3	5.48%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.481e-03	1.0000	335.0	2.67%	1116.9	3.12%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.466e-03	1.0000	1764.0	14.05%	5369.1	14.98%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.410e-03	1.0000	43.0	0.34%	186.9	0.52%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.275e-03	1.0000	194.0	1.54%	680.6	1.90%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.143e-03	1.0000	108.0	0.86%	406.5	1.13%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.117e-03	1.0000	363.0	2.89%	1207.9	3.37%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.077e-03	1.0000	43.0	0.34%	188.7	0.53%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.026e-03	1.0000	1982.0	15.78%	6020.7	16.80%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-9.460e-04	1.0000	2586.0	20.59%	7785.2	21.73%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.000e-04	1.0000	1296.0	10.32%	4008.0	11.18%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-8.340e-04	1.0000	1303.0	10.38%	4031.6	11.25%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-8.080e-04	1.0000	686.0	5.46%	2194.8	6.12%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.050e-04	1.0000	280.0	2.23%	958.3	2.67%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-6.890e-04	1.0000	597.0	4.75%	1930.0	5.39%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.840e-04	1.0000	426.0	3.39%	1409.8	3.93%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-6.670e-04	1.0000	1294.0	10.30%	4011.0	11.19%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.630e-04	1.0000	375.0	2.99%	1253.7	3.50%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-6.430e-04	1.0000	381.0	3.03%	1272.2	3.55%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-6.290e-04	1.0000	1778.0	14.16%	5439.9	15.18%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-6.260e-04	1.0000	1930.0	15.37%	5885.7	16.42%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-5.050e-04	1.0000	722.0	5.75%	2313.9	6.46%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-4.820e-04	1.0000	718.0	5.72%	2302.3	6.42%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.710e-04	1.0000	3006.0	23.94%	9034.0	25.21%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-4.580e-04	1.0000	553.0	4.40%	1804.6	5.04%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-4.250e-04	1.0000	7.0	0.06%	55.5	0.15%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-3.630e-04	1.0000	465.0	3.70%	1540.5	4.30%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.600e-04	1.0000	45.0	0.36%	203.0	0.57%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-3.500e-04	1.0000	317.0	2.52%	1085.0	3.03%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-2.980e-04	1.0000	109.0	0.87%	423.5	1.18%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-2.360e-04	1.0000	1618.0	12.88%	4999.6	13.95%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-2.310e-04	1.0000	772.0	6.15%	2481.8	6.93%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-2.030e-04	1.0000	538.0	4.28%	1774.9	4.95%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.660e-04	1.0000	441.0	3.51%	1480.2	4.13%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.630e-04	1.0000	298.0	2.37%	1036.5	2.89%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.450e-04	1.0000	1873.0	14.91%	5765.3	16.09%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.380e-04	1.0000	490.0	3.90%	1634.8	4.56%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.380e-04	1.0000	256.0	2.04%	906.9	2.53%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.340e-04	1.0000	210.0	1.67%	760.3	2.12%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.050e-04	1.0000	112.0	0.89%	443.1	1.24%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.040e-04	1.0000	316.0	2.52%	1099.9	3.07%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.300e-05	1.0000	208.0	1.66%	758.5	2.12%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.900e-05	1.0000	455.0	3.62%	1538.8	4.29%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-5.900e-05	1.0000	774.0	6.16%	2516.5	7.02%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-4.900e-05	1.0000	2523.0	20.09%	7706.9	21.51%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-3.900e-05	1.0000	2278.0	18.14%	6995.7	19.52%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-3.500e-05	1.0000	1569.0	12.49%	4908.5	13.70%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.400e-05	1.0000	246.0	1.96%	892.1	2.49%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.400e-05	1.0000	1523.0	12.13%	4773.0	13.32%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.300e-05	1.0000	270.0	2.15%	969.2	2.70%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-3.300e-05	1.0000	418.0	3.33%	1435.4	4.01%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-3.200e-05	1.0000	1347.0	10.73%	4250.4	11.86%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.900e-05	1.0000	1617.0	12.88%	5055.6	14.11%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-2.300e-05	1.0000	1809.0	14.41%	5630.5	15.71%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.000e-05	1.0000	2050.0	16.32%	6345.8	17.71%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.900e-05	1.0000	1486.0	11.83%	4677.5	13.05%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-1.800e-05	1.0000	738.0	5.88%	2430.2	6.78%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.600e-05	1.0000	751.0	5.98%	2472.7	6.90%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.400e-05	1.0000	306.0	2.44%	1095.9	3.06%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.200e-05	1.0000	226.0	1.80%	840.3	2.34%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.100e-05	1.0000	319.0	2.54%	1140.0	3.18%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-9.000e-06	1.0000	312.0	2.48%	1120.0	3.13%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-9.000e-06	1.0000	1397.0	11.12%	4430.1	12.36%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-9.000e-06	1.0000	757.0	6.03%	2501.9	6.98%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-8.000e-06	1.0000	3440.0	27.39%	10439.8	29.13%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.000e-06	1.0000	528.0	4.20%	1800.9	5.03%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-6.000e-06	1.0000	227.0	1.81%	851.3	2.38%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.000e-06	1.0000	875.0	6.97%	2870.6	8.01%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.000e-06	1.0000	1234.0	9.83%	3955.4	11.04%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.000e-06	1.0000	419.0	3.34%	1466.5	4.09%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-4.000e-06	1.0000	3096.0	24.65%	9455.1	26.39%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.000e-06	1.0000	1714.0	13.65%	5394.5	15.05%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-3.000e-06	1.0000	546.0	4.35%	1868.9	5.22%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-3.000e-06	1.0000	914.0	7.28%	3003.2	8.38%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-2.000e-06	1.0000	2495.0	19.87%	7717.5	21.54%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-2.000e-06	1.0000	484.0	3.85%	1682.9	4.70%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-2.000e-06	1.0000	774.0	6.16%	2581.2	7.20%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.000e-06	1.0000	703.0	5.60%	2363.9	6.60%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.000e-06	1.0000	523.0	4.16%	1808.9	5.05%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.000e-06	1.0000	1331.0	10.60%	4275.4	11.93%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-1.000e-06	1.0000	597.0	4.75%	2041.5	5.70%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.000e-06	1.0000	1323.0	10.54%	4253.2	11.87%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-1.000e-06	1.0000	2443.0	19.45%	7585.7	21.17%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.000e-06	1.0000	1549.0	12.33%	4938.2	13.78%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.000e-06	1.0000	595.0	4.74%	2043.6	5.70%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.000e-06	1.0000	329.0	2.62%	1205.8	3.36%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.000e-06	1.0000	1304.0	10.38%	4209.2	11.75%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.000e-06	1.0000	1131.0	9.01%	3687.6	10.29%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.000e-06	1.0000	536.0	4.27%	1864.5	5.20%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-0.000e+00	1.0000	471.0	3.75%	1668.9	4.66%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-0.000e+00	1.0000	471.0	3.75%	1668.9	4.66%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-0.000e+00	1.0000	999.0	7.96%	3302.5	9.22%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-0.000e+00	1.0000	492.0	3.92%	1738.9	4.85%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-0.000e+00	1.0000	504.0	4.01%	1778.3	4.96%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-0.000e+00	1.0000	391.0	3.11%	1420.8	3.96%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-0.000e+00	1.0000	1044.0	8.31%	3447.2	9.62%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-0.000e+00	1.0000	460.0	3.66%	1640.3	4.58%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	446.0	3.55%	1596.0	4.45%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-0.000e+00	1.0000	2009.0	16.00%	6347.2	17.71%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-0.000e+00	1.0000	1128.0	8.98%	3709.6	10.35%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-0.000e+00	1.0000	1222.0	9.73%	3997.1	11.15%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-0.000e+00	1.0000	696.0	5.54%	2388.5	6.67%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-0.000e+00	1.0000	4166.0	33.17%	12679.9	35.38%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-0.000e+00	1.0000	407.0	3.24%	1481.7	4.13%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	1177.0	9.37%	3869.5	10.80%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-0.000e+00	1.0000	432.0	3.44%	1563.7	4.36%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	116.0	0.92%	522.7	1.46%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-0.000e+00	1.0000	926.0	7.37%	3121.6	8.71%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-0.000e+00	1.0000	106.0	0.84%	491.8	1.37%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-0.000e+00	1.0000	1267.0	10.09%	4166.9	11.63%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-0.000e+00	1.0000	409.0	3.26%	1506.9	4.21%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	1828.0	14.56%	5864.5	16.37%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-0.000e+00	1.0000	1048.0	8.35%	3511.7	9.80%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-0.000e+00	1.0000	882.0	7.02%	3001.2	8.38%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-0.000e+00	1.0000	456.0	3.63%	1670.2	4.66%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-0.000e+00	1.0000	591.0	4.71%	2101.6	5.86%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-0.000e+00	1.0000	543.0	4.32%	1951.7	5.45%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-0.000e+00	1.0000	1066.0	8.49%	3582.4	10.00%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-0.000e+00	1.0000	847.0	6.74%	2907.8	8.11%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	2697.0	21.48%	8487.4	23.68%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-0.000e+00	1.0000	579.0	4.61%	2079.2	5.80%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-0.000e+00	1.0000	590.0	4.70%	2117.5	5.91%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	931.0	7.41%	3192.6	8.91%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-0.000e+00	1.0000	812.0	6.47%	2826.5	7.89%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-0.000e+00	1.0000	893.0	7.11%	3084.9	8.61%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-0.000e+00	1.0000	798.0	6.35%	2791.6	7.79%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	884.0	7.04%	3060.2	8.54%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-0.000e+00	1.0000	587.0	4.67%	2129.9	5.94%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-0.000e+00	1.0000	1714.0	13.65%	5626.6	15.70%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-0.000e+00	1.0000	743.0	5.92%	2646.6	7.39%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	717.0	5.71%	2570.2	7.17%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-0.000e+00	1.0000	389.0	3.10%	1516.3	4.23%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-0.000e+00	1.0000	2121.0	16.89%	6897.2	19.25%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-0.000e+00	1.0000	570.0	4.54%	2120.0	5.92%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-0.000e+00	1.0000	1594.0	12.69%	5330.2	14.87%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-0.000e+00	1.0000	502.0	4.00%	1929.9	5.39%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	676.0	5.38%	2499.6	6.98%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-0.000e+00	1.0000	1067.0	8.50%	3810.7	10.63%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	6.6	0.02%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	0.000e+00	1.0000	505.0	4.02%	2110.1	5.89%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	0.000e+00	1.0000	2245.0	17.88%	7648.8	21.34%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	0.000e+00	1.0000	2290.0	18.24%	7916.3	22.09%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.00%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	0.000e+00	1.0000	2965.0	23.61%	9760.5	27.24%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%